BAC Information

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BAC

Clone NameB6Ng01-089F19
Chromosome2 (Build37)
Map Location 106,323,956 - 106,461,496
singlet/doubletdoublet
Overlap gene9330126M15
Upstream genePax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
Downstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089F19.bB6Ng01-089F19.g
ACCDH901960DH901961
length570767
definitionDH901960|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F19, 5' end.DH901961|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,460,921 - 106,461,496)(106,323,956 - 106,324,724)
sequence
tgcctgagcacttgtcagccaaggaggctatgaggctgcgtttggtttca
cccagcagactcacctgagatggtttacgtgccttcatatatttcatttc
atccatacagtaacaccaacactaatacttgttcattttttcagatatta
aatttgattgatctcttgtgaatggaaagataaaaacaaattctgtgtta
tctcaacctgtcttctcaagacagtaaggggactgggaggagagaaacgc
ctctgggagagatacttgggaatgagtgtggacattgagcagctgatttt
taaaaatgggtggggaatgctatcggtgacagagaacaccaggtgtctaa
ggaggtcctggcagaatgagtgactcatcgacatagcagtgacaagttaa
gaaagactaacccaaatttcctttaagggtatggcctctgctaggttgac
tctgatggatagcctcatactcatgaatatatgggtgtattggactctaa
actattgaaagaaggaaaaaatgaggaggaagagaaggaggaggaagaag
aggaaagggattggtagtag
gaattctgtgccatcaactaagatggcacacacacgcacacacaccactg
tatatcataatgttccaatatggtggcttgaatgaaaatagtccccatag
gctcatatacttgaatgattggttcctagttagtacaactgtttggaaag
gattaggaggtgtggccttggagaagatgtggccttgttggaggaggtat
atctctggggttatctttgagatttcaaaggcccatgccaggcttgtgtg
ctctctctctctctctctctctctctctctctctctctctctctctcttt
ctctctctgcttcccacttgtagatgagatgtgagctctcagctacagcc
tcagcaccatgccagtctgctcaatacttggcttcccaacacaatgatca
tggactcaccatctaaaactgttaagcaagggtggtgatggtgcacacct
ttaatcccagcacttgggaggcataggcaggtgggtttctgagtttgagg
ccagccaggtctacagagtgagtcccatgacagccagggctacacagaga
aacctctgtctcgaaaaaaaaaaaaaaagtacttttaaaagttgccttgg
tctggtgtctcttcacagtggatagaaaattaactaagacatccagtttc
tatataagattttggaatttctcaattcttttagtttttgttgacaaggt
gggtaagtaatcatctccttctgtcttagtggccaatcatgaatgatagg
aaaaaattcagggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_106460921_106461496
seq2: B6Ng01-089F19.b_46_621 (reverse)

seq1  CTACTACCAATCCCTTTCCTCTTCTTCCTCCTCCTTCTCTTCCTCCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACCAATCCCTTTCCTCTTCTTCCTCCTCCTTCTCTTCCTCCTCAT  50

seq1  TTTTTCCTTCTTTCAATAGTTTAGAGTCCAATACACCCATATATTCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTCTTTCAATAGTTTAGAGTCCAATACACCCATATATTCATGA  100

seq1  GTATGAGGCTATCCATCAGAGTCAACCTAGCAGAGGCCATACCCTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGGCTATCCATCAGAGTCAACCTAGCAGAGGCCATACCCTTAAAG  150

seq1  GAAATTTGGGTTAGTCTTTCTTAACTTGTCACTGCTATGTCGATGAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGGGTTAGTCTTTCTTAACTTGTCACTGCTATGTCGATGAGTCA  200

seq1  CTCATTCTGCCAGGACCTCCTTAGACACCTGGTGTTCTCTGTCACCGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTGCCAGGACCTCCTTAGACACCTGGTGTTCTCTGTCACCGATA  250

seq1  GCATTCCCCACCCATTTTTAAAAATCAGCTGCTCAATGTCCACACTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCCACCCATTTTTAAAAATCAGCTGCTCAATGTCCACACTCATT  300

seq1  CCCAAGTATCTCTCCCAGAGGCGTTTCTCTCCTCCCAGTCCCCTTACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTATCTCTCCCAGAGGCGTTTCTCTCCTCCCAGTCCCCTTACTGT  350

seq1  CTTGAGAAGACAGGTTGAGATAACACAGAATTTGTTTTTATCTTTCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAGACAGGTTGAGATAACACAGAATTTGTTTTTATCTTTCCATT  400

seq1  CACAAGAGATCAATCAAATTTAATATCTGAAAAAATGAACAAGTATTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGATCAATCAAATTTAATATCTGAAAAAATGAACAAGTATTAGT  450

seq1  GTTGGTGTTACTGTATGGATGAAATGAAATATATGAAGGCACGTAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGTTACTGTATGGATGAAATGAAATATATGAAGGCACGTAAACCA  500

seq1  TCTCAGGTGAGTCTGCTGGGTGAAACCAAACGCAGCCTCATAGCCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGTGAGTCTGCTGGGTGAAACCAAACGCAGCCTCATAGCCTCCTT  550

seq1  GGCTGACAAGTGCTCAGGCAGAATTC  576
      ||||||||||||||||||||||||||
seq2  GGCTGACAAGTGCTCAGGCAGAATTC  576

seq1: chr2_106323956_106324724
seq2: B6Ng01-089F19.g_69_835

seq1  GAATTCTGTGCCATCAACTAAGATGGCACACACACGCACACACACCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCCATCAACTAAGATGGCACACACACGCACACACACCACTG  50

seq1  TATATCATAATGTTCCAATATGGTGGCTTGAATGAAAATAGTCCCCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATAATGTTCCAATATGGTGGCTTGAATGAAAATAGTCCCCATAG  100

seq1  GCTCATATACTTGAATGATTGGTTCCTAGTTAGTACAACTGTTTGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATATACTTGAATGATTGGTTCCTAGTTAGTACAACTGTTTGGAAAG  150

seq1  GATTAGGAGGTGTGGCCTTGGAGAAGATGTGGCCTTGTTGGAGGAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGAGGTGTGGCCTTGGAGAAGATGTGGCCTTGTTGGAGGAGGTAT  200

seq1  ATCTCTGGGGTTATCTTTGAGATTTCAAAGGCCCATGCCAGGCTTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGGGTTATCTTTGAGATTTCAAAGGCCCATGCCAGGCTTGTGTG  250

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  300

seq1  CTCTCTCTGCTTCCAACTTGTAGATGAGATGTGAGCTCTCAGCTACAGCC  350
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGCTTCCCACTTGTAGATGAGATGTGAGCTCTCAGCTACAGCC  350

seq1  TCAGCACCATGCCAGTCTGCTCAATACTTGGCTTCCCAACACAATGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCATGCCAGTCTGCTCAATACTTGGCTTCCCAACACAATGATCA  400

seq1  TGGACTCACCATCTAAAACTGTTAAGCAAGGGTGGTGATGGTGCACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCACCATCTAAAACTGTTAAGCAAGGGTGGTGATGGTGCACACCT  450

seq1  TTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTTTGAGG  500
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTTGGGAGGCATAGGCAGGTGGGTTTCTGAGTTTGAGG  500

seq1  CCAGCCTGGTCTACAGAGTGAGTCCCAGGACAGCCAGGGCTACACAGAGA  550
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAGCCAGGTCTACAGAGTGAGTCCCATGACAGCCAGGGCTACACAGAGA  550

seq1  AACC-CTGTCTCG-AAGAAAAAAAAAAAGTACTTTCAAAAGTTGCCTTGG  598
      |||| |||||||| || |||||||||||||||||| ||||||||||||||
seq2  AACCTCTGTCTCGAAAAAAAAAAAAAAAGTACTTTTAAAAGTTGCCTTGG  600

seq1  TCATGGTGTCTCTTCACAGT-GATAGAAAATTAACTAAGACATCCAGGTT  647
      || ||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  TC-TGGTGTCTCTTCACAGTGGATAGAAAATTAACTAAGACATCCAGTTT  649

seq1  CATATATAAAGATTTATGAAGTTTCTTCAATCTTCTAGTTTTTTATTGAC  697
      | ||||| ||||||| || | |||||  | |||| ||| ||||| |||||
seq2  C-TATAT-AAGATTT-TGGAATTTCTCAATTCTTTTAG-TTTTTGTTGAC  695

seq1  AAGGTAGGTAAGTTATCATCACC-TCTGTCTTAGTGGCCAATATAGGAAT  746
      ||||| ||||||| |||||| || ||||||||||||||||||  | ||||
seq2  AAGGTGGGTAAGTAATCATCTCCTTCTGTCTTAGTGGCCAAT-CATGAAT  744

seq1  TAGATGAGAAAATTCAGGTAAAA  769
       | | || |||||||||| ||||
seq2  GATAGGAAAAAATTCAGGGAAAA  767