BAC Information

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BAC

Clone NameB6Ng01-089K04
Chromosome9 (Build37)2 (Build37)
Map Location 39,578,816 - 39,579,973100,609,936 - 100,610,459
singlet/doubletsingletsinglet
Overlap geneOlfr968
Upstream geneOlfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967
Downstream geneOlfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089K04.bB6Ng01-089K04.g
ACCDH902164DH902165
length1,1451,018
definitionDH902164|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K04, 5' end.DH902165|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,578,816 - 39,579,973)(100,609,936 - 100,610,459)
sequence
gaattctttttcttactttgtttgctttagaggcttgtgtacactgaatt
cattcctgttgaacagagtgtttctcatcctctctagttctttttagaag
taggatctgtgttaacaaacaagatataactctatgtcctttaatatact
tctagagatttagaaaaaaatcgtagtaatattttgcatagtttatttct
taataaaattattcttttggatatcacaatgtctgaaatccttagaaata
tatttcattaaataggctaattaaatagaatattgagataatcaaaaatg
ctggccaaatgtatttattttcttccataagataacatataagtgaaatt
gttctatatacatagaacagacacacttatgagaaggctttgatgtttca
acaaactgattagtgggttgcatgctatgataagcagatggttctctata
tcccatatagatgttgtccttcatatgttccattgtctaaaacttgtcct
gctcttggagactttaaatataaacagcaatagatagtagttatctcaaa
acttgtggtggccatacttagcaagctgaactatttgtcagccctctaac
aagaattttagtaaagaaaaaaatcagttttgttcacaagaaaaaattct
ttcaaggaacttatttagagcaactttgacatccttattcctcaggctgt
agatcaaaggattcagcatgggcacgacaatggtataaaatacagaggac
actttcctttggtccatggagttgattgatgatggctgcagtacatgaat
gcaagggatctcaaagatatagcaactgctgatatgtgtgagctgcaagt
gctgaaggcttttggacctgccttcagtggatttaatccggaggatgctg
gctatgatgagatgtaagagcttagaatgtcagagttggaataaagatat
tggaaaacactgaagcacaagctaatacttcattaataaaagtatcagaa
caagaaagttccagagtggggaaagaatcacgaagttatgattattacat
tgtctttcaaaatgcatttaccgtgaagactgtttgaatgtggcaccacc
aaagcctaaataatactccaatttcctccgggaacaaactgatag
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgaaaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattgataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagatatttgtccatttcgtccaggttttccg
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttgat
taggattttgtccctttgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccgactcctcgttttgttaattctttga
atagttcttcttttttccacttggttaatttcacccctgagtttgattat
ttcctgccgtttactcctcttgtgtgaatttgcttcctttttttctagag
ctttagatgtgttgtcaagctgctactgtgtgctctctcccgtttctttt
tggaggtactcagagcttatgagtttcctccttagaaatgcttcatggtg
tcccaaaggtttgggtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_39578816_39579973
seq2: B6Ng01-089K04.b_45_1189

seq1  GAATTCTTTTTCTTACTTTGTTTGCTTTAGAGGCTTGTGTACACTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTTACTTTGTTTGCTTTAGAGGCTTGTGTACACTGAATT  50

seq1  CATTCCTGTTGAACAGAGTGTTTCTCATCCTCTCTAGTTCTTTTTAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGTTGAACAGAGTGTTTCTCATCCTCTCTAGTTCTTTTTAGAAG  100

seq1  TAGGATCTGTGTTAACAAACAAGATATAACTCTATGTCCTTTAATATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTGTGTTAACAAACAAGATATAACTCTATGTCCTTTAATATACT  150

seq1  TCTAGAGATTTAGAAAAAAATCGTAGTAATATTTTGCATAGTTTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGATTTAGAAAAAAATCGTAGTAATATTTTGCATAGTTTATTTCT  200

seq1  TAATAAAATTATTCTTTTGGATATCACAATGTCTGAAATCCTTAGAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATTATTCTTTTGGATATCACAATGTCTGAAATCCTTAGAAATA  250

seq1  TATTTCATTAAATAGGCTAATTAAATAGAATATTGAGATAATCAAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTAAATAGGCTAATTAAATAGAATATTGAGATAATCAAAAATG  300

seq1  CTGGCCAAATGTATTTATTTTCTTCCATAAGATAACATATAAGTGAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAAATGTATTTATTTTCTTCCATAAGATAACATATAAGTGAAATT  350

seq1  GTTCTATATACATAGAACAGACACACTTATGAGAAGGCTTTGATGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATACATAGAACAGACACACTTATGAGAAGGCTTTGATGTTTCA  400

seq1  ACAAACTGATTAGTGGGTTGCATGCTATGATAAGCAGATGGTTCTCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGATTAGTGGGTTGCATGCTATGATAAGCAGATGGTTCTCTATA  450

seq1  TCCCATATAGATGTTGTCCTTCATATGTTCCATTGTCTAAAACTTGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATAGATGTTGTCCTTCATATGTTCCATTGTCTAAAACTTGTCCT  500

seq1  GCTCTTGGAGACTTTAAATATAAACAGCAATAGATAGTAGTTATCTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGAGACTTTAAATATAAACAGCAATAGATAGTAGTTATCTCAAA  550

seq1  ACTTGTGGTGGCCATACTTAGCAAGCTGAACTATTTGTCAGCCCTCTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGTGGCCATACTTAGCAAGCTGAACTATTTGTCAGCCCTCTAAC  600

seq1  AAGAATTTTAGTAAAGAAAAAAATCAGTTTTGTTCACAAGAAAAAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTAGTAAAGAAAAAAATCAGTTTTGTTCACAAGAAAAAATTCT  650

seq1  TTCAAGGAACTTATTTAGAGCAACTTTGACATCCTTATTCCTCAGGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAACTTATTTAGAGCAACTTTGACATCCTTATTCCTCAGGCTGT  700

seq1  AGATCAAAGGATTCAGCATGGGCACGACAATGGTATAAAATACAGAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAAGGATTCAGCATGGGCACGACAATGGTATAAAATACAGAGGAC  750

seq1  ACTTTCCTTTGGTCCATGGAGTTGATTGATGATGGCTGCAGGTACATGAA  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTTTCCTTTGGTCCATGGAGTTGATTGATGATGGCTGCA-GTACATGAA  799

seq1  TGCAAGGGATC-CAAAGAATATAGCAACTGCTGATATGTGTGAGCTGCAA  849
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  TGCAAGGGATCTCAAAG-ATATAGCAACTGCTGATATGTGTGAGCTGCAA  848

seq1  GTGCTGAAGGC-TTTGGACCTGCCTTCAGTGGATTTAATCCGGAGGATGC  898
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAAGGCTTTTGGACCTGCCTTCAGTGGATTTAATCCGGAGGATGC  898

seq1  TGGCTATGATGAAGATGTAAGAGCTTAGAATTGTCAGAGTTGGAATAAAG  948
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  TGGCTATGATG-AGATGTAAGAGCTTAGAA-TGTCAGAGTTGGAATAAAG  946

seq1  ATATT-GAAAACACTGAAGCACAAAGCTAATACTTCATTAATAAAAGTAT  997
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATTGGAAAACACTGAAGCAC-AAGCTAATACTTCATTAATAAAAGTAT  995

seq1  CAGAACAAGAGAGTTCCAGGAGTGGGGAAAG-ATCACAGAAGTAATGATT  1046
      |||||||||| ||||||| |||||||||||| ||||| ||||| |||| |
seq2  CAGAACAAGAAAGTTCCA-GAGTGGGGAAAGAATCAC-GAAGTTATGA-T  1042

seq1  TATTACATTGGCCTTACAAAAATGCACTTTTAACATGAAGACTGTTTGAG  1096
      |||||||||| | ||   ||||||||  |||| | |||||||||||||| 
seq2  TATTACATTGTCTTT--CAAAATGCA--TTTACCGTGAAGACTGTTTGA-  1087

seq1  TTGTGGCACCAACAAAAGCCATAATATATACTCCAAATATCATCCAGGAA  1146
       ||||||||| || ||||||  |||| ||||||| ||| || ||| ||||
seq2  ATGTGGCACC-ACCAAAGCCTAAATA-ATACTCC-AATTTCCTCCGGGAA  1134

seq1  CAAACTTGATAG  1158
      ||||| ||||||
seq2  CAAAC-TGATAG  1145

seq1: chr2_100609936_100610459
seq2: B6Ng01-089K04.g_69_592 (reverse)

seq1  TCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTC  50
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  TCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATCAATAGTC  50

seq1  TCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTAT  100
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTAT  100

seq1  CAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAA  150

seq1  GATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTA  200

seq1  CTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGA  250

seq1  CCAATTTCTCTTATGAATATCGATGCAAAAATCCTTAATAAAATTCTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCAATTTCTCTTATGAATATCGATGCAAAAATCCTTAATAAAATTTTCGC  300

seq1  TAACCGAATCCAAGAACACATTAAAGAAATCATCCATCCTGACCAAGTAG  350
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAG  350

seq1  GTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAAT  400

seq1  GTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTC  450

seq1  GTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAA  500

seq1  AAGTTTTGGAAAGATCAGGAATTC  524
      ||||||||||||||||||||||||
seq2  AAGTTTTGGAAAGATCAGGAATTC  524