BAC Information

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BAC

Clone NameB6Ng01-090A10
Chromosome2 (Build37)
Map Location 12,226,318 - 12,321,197
singlet/doubletdoublet
Overlap gene2310047O13Rik
Upstream geneLOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8
Downstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090A10.bB6Ng01-090A10.g
ACCDH902440DH902441
length1,1131,012
definitionDH902440|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A10, 5' end.DH902441|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,320,050 - 12,321,197)(12,226,318 - 12,226,846)
sequence
gaattccagaagagtcttttcctgggtcctgtgtaattgttcgtattttt
cttctatggatagctatttctttcggctcacctctctgcacctaactcca
catgcacacctctggtcctgtcttctttgcaaatgtaaatttcaattgct
tgtggccttgcactcacacttggaatgtctcctgattataccttgtctga
aatcagcatttttttttttcttatgctttttgagcattgactctgtatga
taggtctgtgacatccgttttttaaataaaggttttctatttttcattat
aaaaatagcatattaataattctattatggtcatgatttggggtgttagt
ttttagatttattttatttattacatgcaaaagagtttttgaaaaaatag
aagctatgactcaagtttgttgacaggactcaagagcaaattctgcgtag
taaggaccatttggtgcatgtagagcctttatagatgagaagagttttac
aagcagtaggagaagcaagtctaaaggagaaagggattggggtataacac
aggtttggggctcataaatacttcaagcctacggcagtgggtatacctag
ggacaaccgtgaaaggtgacattcacaccttttatataagaggtctcttg
tgaattgtgcaaaaaatacttaaggtttcatatcatcagaattggaacac
aatacaatgtttaatatggaaatgacaagatcttattgtgtggttagaag
atgcctgaattggaatgagagtttgtgatgaagagatttggtaagtggaa
acctagagacaaggatactgaagtagtattgtagtagaagctgaaataaa
acaggatggtgaccatagaatggaagagaaagggaaggtatttagtatca
ataccttaataatattatatatatactatatatatatatatatatatata
gaaaatcagccaatacttgatgagtcagtgtagggtagcgtagtgtaggg
ctagtatttaacctcatgactactgtcatctcgaccatgtttatgctccc
tactctgaactttgacctggactgaatccagcatgtgtcgaagttcctgg
gatttctttgacc
gaattccttaccctacgtagtttctaaggaatactttttaaaaaaaatct
tatcttaactgacaatgttccattcaagagccaaagaccacctgataaaa
accccaagaccaggtatgaaagaaattgttggtcagggttgtctaagagc
cctcctgattacagactgttgctactgcccttggttgacttttagaggtt
gaaggtgagcttctattgctgaagacactgtgtccttcagacacaggccc
acaggaccctgagctgaaactgatctgaaagccccctccctgagaagcag
ccttcatggaccagaagacaccatgcatgcttccaaaggagcactgccca
gctatcatgcctttgagccacgacgactaacatggcctcacagtggtagc
tcacagagtttggcagaaaccaacagctctctaagcagacttgagaccaa
ctcagtaagaggggactcattcctggaactgggaactgagccaatcacgc
agggctaagaacgtcacagatcttagaggaaaaacacctctttactaaac
cagcataatccataactacactctataaatttgtgcttatatccacagat
aaatgtagtcctcaccccttatgaaggaaacttctctctgcaacagatgg
agaccatcacagaaaaccacaaccaatcaaaattcagagtcgtaaaagcc
cagtcctgatggatacatctacaaaacaacttttacacctaaagttcaag
ggtcatttcagaagaggagactgaaagattgtaaaagccagaggctctag
ctaagagactgtgtgagtaatggcagaagatacgcccttacagtctcacc
agcatgactgccttaacacgagctgaacaggacatcggcagacgctccga
agtggatgagagaggatcctgagcttcaccctacacagaaagctacaggc
agccaacagtgctgagagtggaagtatatctttcccaggaagagcacagc
atggttagctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_12320050_12321197
seq2: B6Ng01-090A10.b_47_1159 (reverse)

seq1  GGTCAAAGGAATCCCAGGGAACATCTGACACATGGCTGGGATACAGGTCA  50
      |||||||| ||||||| ||||| || ||||||| ||| |||| |||  | 
seq2  GGTCAAAGAAATCCCA-GGAACTTC-GACACAT-GCT-GGATTCAGTCC-  45

seq1  AAGGTCAAAGGTCAGAGATAAGGGGAGCATAAACATTGGTCGAGAATGAA  100
       ||||||||| |||||| ||  ||||||||||||| |||||||| ||| |
seq2  -AGGTCAAAGTTCAGAG-TA--GGGAGCATAAACA-TGGTCGAG-ATG-A  88

seq1  CAGTTAGTTCATGAGGGTACAATACCTTAGCCCCTACCACTACCGCTACC  150
      ||| ||| |||||||| || |||||  ||| ||||| ||||| |||||||
seq2  CAG-TAG-TCATGAGGTTA-AATAC--TAG-CCCTA-CACTA-CGCTACC  130

seq1  CTAACCACCTGACCTCATTCAAGTATTTGGCTGATTTTTCTTATTATATA  200
      |||  || |||| |||| ||||||| ||||||||||||      ||||||
seq2  CTA--CA-CTGA-CTCA-TCAAGTA-TTGGCTGATTTT-----CTATATA  169

seq1  TTATTATATATTATATATTAGTATAATATATAATATTATTAAGGTATTGA  250
      |   |||||| |||||| |||||| |||||||||||||||||||||||||
seq2  TATATATATA-TATATA-TAGTAT-ATATATAATATTATTAAGGTATTGA  216

seq1  TACTAAATACCTTCCCTTTTCTCTTCCATTCTATGGTCACCATCCTGTTT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACTAAATACCTTCCC-TTTCTCTTCCATTCTATGGTCACCATCCTGTTT  265

seq1  TATTTCAGCTTCTACTACAATACTACTTCAGTATCCTTGTCTCTAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGCTTCTACTACAATACTACTTCAGTATCCTTGTCTCTAGGTTT  315

seq1  CCACTTACCAAATCTCTTCATCACAAACTCTCATTCCAATTCAGGCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTACCAAATCTCTTCATCACAAACTCTCATTCCAATTCAGGCATCT  365

seq1  TCTAACCACACAATAAGATCTTGTCATTTCCATATTAAACATTGTATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCACACAATAAGATCTTGTCATTTCCATATTAAACATTGTATTGT  415

seq1  GTTCCAATTCTGATGATATGAAACCTTAAGTATTTTTTGCACAATTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAATTCTGATGATATGAAACCTTAAGTATTTTTTGCACAATTCACA  465

seq1  AGAGACCTCTTATATAAAAGGTGTGAATGTCACCTTTCACGGTTGTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTCTTATATAAAAGGTGTGAATGTCACCTTTCACGGTTGTCCCT  515

seq1  AGGTATACCCACTGCCGTAGGCTTGAAGTATTTATGAGCCCCAAACCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATACCCACTGCCGTAGGCTTGAAGTATTTATGAGCCCCAAACCTGT  565

seq1  GTTATACCCCAATCCCTTTCTCCTTTAGACTTGCTTCTCCTACTGCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACCCCAATCCCTTTCTCCTTTAGACTTGCTTCTCCTACTGCTTGT  615

seq1  AAAACTCTTCTCATCTATAAAGGCTCTACATGCACCAAATGGTCCTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTCTCATCTATAAAGGCTCTACATGCACCAAATGGTCCTTACT  665

seq1  ACGCAGAATTTGCTCTTGAGTCCTGTCAACAAACTTGAGTCATAGCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGAATTTGCTCTTGAGTCCTGTCAACAAACTTGAGTCATAGCTTCT  715

seq1  ATTTTTTCAAAAACTCTTTTGCATGTAATAAATAAAATAAATCTAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAAAAACTCTTTTGCATGTAATAAATAAAATAAATCTAAAAAC  765

seq1  TAACACCCCAAATCATGACCATAATAGAATTATTAATATGCTATTTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCCCAAATCATGACCATAATAGAATTATTAATATGCTATTTTTAT  815

seq1  AATGAAAAATAGAAAACCTTTATTTAAAAAACGGATGTCACAGACCTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAATAGAAAACCTTTATTTAAAAAACGGATGTCACAGACCTATC  865

seq1  ATACAGAGTCAATGCTCAAAAAGCATAAGAAAAAAAAAAATGCTGATTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGTCAATGCTCAAAAAGCATAAGAAAAAAAAAAATGCTGATTTC  915

seq1  AGACAAGGTATAATCAGGAGACATTCCAAGTGTGAGTGCAAGGCCACAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGTATAATCAGGAGACATTCCAAGTGTGAGTGCAAGGCCACAAG  965

seq1  CAATTGAAATTTACATTTGCAAAGAAGACAGGACCAGAGGTGTGCATGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAAATTTACATTTGCAAAGAAGACAGGACCAGAGGTGTGCATGTG  1015

seq1  GAGTTAGGTGCAGAGAGGTGAGCCGAAAGAAATAGCTATCCATAGAAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGGTGCAGAGAGGTGAGCCGAAAGAAATAGCTATCCATAGAAGAA  1065

seq1  AAATACGAACAATTACACAGGACCCAGGAAAAGACTCTTCTGGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACGAACAATTACACAGGACCCAGGAAAAGACTCTTCTGGAATTC  1113

seq1: chr2_12226318_12226846
seq2: B6Ng01-090A10.g_68_596

seq1  GAATTCCTTACCCTACGTAGTTTCTAAGGAATACTTTTTAAAAAAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACCCTACGTAGTTTCTAAGGAATACTTTTTAAAAAAAATCT  50

seq1  TATCTTAACTGACAATGTTCCATTCAAGAGCCAAAGACCACCTGATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAACTGACAATGTTCCATTCAAGAGCCAAAGACCACCTGATAAAA  100

seq1  ACCCCAAGACCAGGTATGAAAGAAATTGTTGGTCAGGGTTGTCTAAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGACCAGGTATGAAAGAAATTGTTGGTCAGGGTTGTCTAAGAGC  150

seq1  CCTCCTGATTACAGACTGTTGCTACTGCCCTTGGTTGACTTTTAGAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGATTACAGACTGTTGCTACTGCCCTTGGTTGACTTTTAGAGGTT  200

seq1  GAAGGTGAGCTTCTATTGCTGAAGACACTGTGTCCTTCAGACACAGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAGCTTCTATTGCTGAAGACACTGTGTCCTTCAGACACAGGCCC  250

seq1  ACAGGACCCTGAGCTGAAACTGATCTGAAAGCCCCCTCCCTGAGAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCCTGAGCTGAAACTGATCTGAAAGCCCCCTCCCTGAGAAGCAG  300

seq1  CCTTCATGGACCAGAAGACACCATGCATGCTTCCAAAGGAGCACTGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGGACCAGAAGACACCATGCATGCTTCCAAAGGAGCACTGCCCA  350

seq1  GCTATCATGCCTTTGAGCCACGACGACTAACATGGCCTCACAGTGGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCATGCCTTTGAGCCACGACGACTAACATGGCCTCACAGTGGTAGC  400

seq1  TCACAGAGTTTGGCAGAAACCAACAGCTCTCTAAGCAGACTTGAGACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGTTTGGCAGAAACCAACAGCTCTCTAAGCAGACTTGAGACCAA  450

seq1  CTCAGTAAGAGGGGACTCATTCCTGGAACTGGGAACTGAGCCAATCACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAGAGGGGACTCATTCCTGGAACTGGGAACTGAGCCAATCACGC  500

seq1  AGGGCTAAGAACGTCACAGATCTTAGAGG  529
      |||||||||||||||||||||||||||||
seq2  AGGGCTAAGAACGTCACAGATCTTAGAGG  529