BAC Information

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BAC

Clone NameB6Ng01-090B20
Chromosome2 (Build37)Y (Build37)
Map Location 113,165,578 - 113,166,7101,120,653 - 1,120,703
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3, 4930563P21Rik
Downstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090B20.bB6Ng01-090B20.g
ACCDH902502DH902503
length1,10353
definitionDH902502|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B20, 5' end.DH902503|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,165,578 - 113,166,710)(1,120,653 - 1,120,703)
sequence
gaattccacaaactgatatggaaatttagtctttgagaagtaaagtaatt
gtgtaaccagagttcacactaaatcagttcctcttagtaattatcacagt
agaagaataaaatgcattaacaccattttcccccttggagataaacacac
acacacacacacacacacacacacaatttttttttataaagtatcctagc
gggacctagttcctctatgcccaactccttcaaattgcaatcttcaaagc
acttctaatataccaggatccctcctaaaatatgttaggagcatttgcaa
gccagctttgctcataagaggggctattatttgatattaatgggaaggaa
gcacattcttccagggcttgaccacagctagttgctaattgatgttggaa
ttctttaaagcactctgtcaaaataatgtcttggctctgagaactgagtc
ctatgaagaatttttttttaataagagagctttaataatccaaagtcttc
aaacagtattgttttaacaaagttctaaagagatttctaaattctgttct
gacctttcttcaactccacaaaagctgttcttgcctaaggaaggcaggaa
gagggagaagggagaaggtggtttctcagttgtctgttactatgacaaaa
tatcagagagaaaaatctcagtggtgacagggctagagagattactcaac
agttaagagcactctgtgctcttcttgcagaggaccagggctcagttcct
agtgcaacccccacacaactccagttcttagctttctaccaccctcttct
gtcctctaccggtactgcatacacatggtgtgcataacatacatgcaggt
aaagcactcttacacggaaaggaatacatttaaaaatattaagagtaaag
gagaggaaagcacacagtgtgctctcatgatcctatattaccaccaactg
cagcaaactgcccacaggtcacaatgggttattcacttgggaaaatatca
catctttctacaagacataggaaaaactagcagctttatcaagtttctct
gctactactctttttcaatgtggtattagaatttaccacataccaccaca
tac
ccgggccaaaaagggggagtgggtgggcaggggagtgggggtgggtggat
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_113165578_113166710
seq2: B6Ng01-090B20.b_43_1145 (reverse)

seq1  GTATGTGTGGGTGGGTATGTGTGTAAAATTTCTAAATTACCACATTTTAA  50
      ||||||   ||| |||||||| |||||  ||||||  |||||||  || |
seq2  GTATGT---GGT-GGTATGTG-GTAAA--TTCTAA--TACCACA--TTGA  39

seq1  AAAAGAGTAGTAAGGCAGAGAAACTTTGATAAAACCTGGCTTAAGTTTTT  100
      ||||||||||||  |||||||||| |||||||| |   |||  |||||||
seq2  AAAAGAGTAGTA--GCAGAGAAAC-TTGATAAAGC--TGCT--AGTTTTT  82

seq1  CCTTATGTCTTTGTAGAAAGATGGTGGATATTTTTCCCAAGTGGAATTAA  150
      || |||||| |||||||||||||   |||| ||||||||||||  | |||
seq2  CC-TATGTC-TTGTAGAAAGATG--TGATA-TTTTCCCAAGTG--AATAA  125

seq1  CCCATTGTGACCTGTGGGCAGTTTTGCCTGCAGTTGGTGGTAATATAAGG  200
      ||||||||||||||||||||||||   ||||||||||||||||||| |||
seq2  CCCATTGTGACCTGTGGGCAGTTT--GCTGCAGTTGGTGGTAATAT-AGG  172

seq1  ATCATGAGGGCACACTGTGTGCTTTCCTCTTCCTTTACTCTTAATATTTT  250
      |||||||| |||||||||||||||||||| |||||||||||||||| |||
seq2  ATCATGAGAGCACACTGTGTGCTTTCCTC-TCCTTTACTCTTAATA-TTT  220

seq1  TTAAATGTATTCCTTTCCGTGTAAGAGTGCTTTACCTGCATGTATGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTATTCCTTTCCGTGTAAGAGTGCTTTACCTGCATGTATGTTAT  270

seq1  GCACACCATGTGTATGCAGTACCGGTAGAGGACAGAAGAGGGTGGTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCATGTGTATGCAGTACCGGTAGAGGACAGAAGAGGGTGGTAGAA  320

seq1  AGCTAAGAACTGGAGTTGTGTGGGGGTTGCACTAGGAACTGAGCCCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGAACTGGAGTTGTGTGGGGGTTGCACTAGGAACTGAGCCCTGGT  370

seq1  CCTCTGCAAGAAGAGCACAGAGTGCTCTTAACTGTTGAGTAATCTCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAAGAAGAGCACAGAGTGCTCTTAACTGTTGAGTAATCTCTCTA  420

seq1  GCCCTGTCACCACTGAGATTTTTCTCTCTGATATTTTGTCATAGTAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTCACCACTGAGATTTTTCTCTCTGATATTTTGTCATAGTAACAG  470

seq1  ACAACTGAGAAACCACCTTCTCCCTTCTCCCTCTTCCTGCCTTCCTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGAGAAACCACCTTCTCCCTTCTCCCTCTTCCTGCCTTCCTTAGG  520

seq1  CAAGAACAGCTTTTGTGGAGTTGAAGAAAGGTCAGAACAGAATTTAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACAGCTTTTGTGGAGTTGAAGAAAGGTCAGAACAGAATTTAGAAA  570

seq1  TCTCTTTAGAACTTTGTTAAAACAATACTGTTTGAAGACTTTGGATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAGAACTTTGTTAAAACAATACTGTTTGAAGACTTTGGATTATT  620

seq1  AAAGCTCTCTTATTAAAAAAAAATTCTTCATAGGACTCAGTTCTCAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTCTTATTAAAAAAAAATTCTTCATAGGACTCAGTTCTCAGAGC  670

seq1  CAAGACATTATTTTGACAGAGTGCTTTAAAGAATTCCAACATCAATTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATTATTTTGACAGAGTGCTTTAAAGAATTCCAACATCAATTAGC  720

seq1  AACTAGCTGTGGTCAAGCCCTGGAAGAATGTGCTTCCTTCCCATTAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCTGTGGTCAAGCCCTGGAAGAATGTGCTTCCTTCCCATTAATAT  770

seq1  CAAATAATAGCCCCTCTTATGAGCAAAGCTGGCTTGCAAATGCTCCTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATAGCCCCTCTTATGAGCAAAGCTGGCTTGCAAATGCTCCTAAC  820

seq1  ATATTTTAGGAGGGATCCTGGTATATTAGAAGTGCTTTGAAGATTGCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGGAGGGATCCTGGTATATTAGAAGTGCTTTGAAGATTGCAAT  870

seq1  TTGAAGGAGTTGGGCATAGAGGAACTAGGTCCCGCTAGGATACTTTATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAGTTGGGCATAGAGGAACTAGGTCCCGCTAGGATACTTTATAA  920

seq1  AAAAAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATCTCCAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATCTCCAAG  970

seq1  GGGGAAAATGGTGTTAATGCATTTTATTCTTCTACTGTGATAATTACTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAATGGTGTTAATGCATTTTATTCTTCTACTGTGATAATTACTAA  1020

seq1  GAGGAACTGATTTAGTGTGAACTCTGGTTACACAATTACTTTACTTCTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTGATTTAGTGTGAACTCTGGTTACACAATTACTTTACTTCTCA  1070

seq1  AAGACTAAATTTCCATATCAGTTTGTGGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  AAGACTAAATTTCCATATCAGTTTGTGGAATTC  1103

seq1: chrY_1120653_1120703
seq2: B6Ng01-090B20.g_74_124 (reverse)

seq1  CATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCC  50

seq1  C  51
      |
seq2  C  51