BAC Information

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BAC

Clone NameB6Ng01-090K10
Chromosome16 (Build37)2 (Build37)
Map Location 83,119,011 - 83,120,22096,824,290 - 96,824,806
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090K10.bB6Ng01-090K10.g
ACCDH902893DH902894
length1,198690
definitionDH902893|Mus musculus domesticus DNA, BAC clone: B6Ng01-090K10, 5' end.DH902894|Mus musculus domesticus DNA, BAC clone: B6Ng01-090K10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,119,011 - 83,120,220)(96,824,290 - 96,824,806)
sequence
gaattcttatgataactacatggaagaaatctcctttactattattgaca
gctcttagcatgaaagtttggtagttttcataacttgttttgagaaagct
tttactccgtggccttggctggcatggaacttgctggctaggtatatatt
actgccctaaatctcacagaaatcacctgcctctgctttctgtgtactga
cattaaaagtgtgaacccacataccttgatttataattttgttatctgtc
cttgttttcccatatttttttaaatttgtgattcctcatgatacatgatt
atttcgcttattagtcattattcttttttattatttgtatacatttgtaa
tttggttgctcatattttttacctgtttttaattaacttatactcctgtc
attacattaaaagatgtttgcacatttttttttttgtatgcaagacgtgt
atcaaataagtgttttgcaaatactttcctaagtttgtaacatcctgttt
gattattttaataatgtttgaggcagaacagaaccttcattttattgtca
tatgctgcactgagaaatttctaccagcgtgagatttcatgtcctcccat
attgcctgacagcacttcatacagctgggtctccttacaccaaagcattg
caaagtatcctcctgctgctccgtttaatttcttgttttgattatcatgg
cccattgctaattttcacagttggaggtcacagaaaacaactgacctgga
attgatattaaaagtgattaaggactatgaaggctgaaattcaatagtgg
ataatgcacaccagaaaaaaacaagtctattgtagagcagtgcaataatg
aagcataagaacaaagaattaaaagattttcaatgtacctcattgaagtc
aatgagaaatgaaaatcttgtaaaagccttaactgatataaaggctaagt
attccatgtcatggtgaccacaactggcatctctgggtgaaagtacacta
gacctgaccaaatattaaagtaatgctagtgtcttaatgaaaccgaatca
taatttactattaaggataactcctattgaaaatgctaacaagttaagct
agctgataacctttggaacctgtaagcctagtccaaacacaggaatacca
tcccgcggtgcaatgtgggtgcacgcctttatccagacatttggaggc
gaattcttttgttgcagcattgatccacttcttatagaaccccgtacatg
gtaagtggtgtgctgtaacttcttctaaagtggttcttacactcagctgg
ctgtgttttacttactatctattatctattgttgctgttatttgatacct
cttcccattgcaactgcatattcctatcctaaagaaagatagggttgaga
aatgcaacggagcctgagggaaaggtcatccagagaccagagatccacct
agggacccatcccatctgcatataccaaacccattactgttgagcttgct
gacaggagcatggtatagctgtcccctgagaggctctgccagaacctgac
taatacagattggacacaagcaaccaaccataggattgaaacaagggacc
ccaatgaaggagtcgggggaaggactgaaggcgcataagaggattgcaac
cccctaggaagaacaacaatatcaagtaactggacaccccactcccagga
ctcccagagactaaaccgccaaacgaagtacacatggcaggacccatggc
tctagctgcatatgtagcagagaatcgcctttatgggcattggtgggaag
agagggtctgggtcctctggagacttgatgacccagcataggtggatgct
aggactaggtgaggcagggagtaggtgggtgggttgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_83119011_83120220
seq2: B6Ng01-090K10.b_46_1243

seq1  GAATTCTTATGATAACTACATGGAAGAAATCTCCTTTACTATTATTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGATAACTACATGGAAGAAATCTCCTTTACTATTATTGACA  50

seq1  GCTCTTAGCATGAAAGTTTGGTAGTTTTCATAACTTGTTTTGAGAAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAGCATGAAAGTTTGGTAGTTTTCATAACTTGTTTTGAGAAAGCT  100

seq1  TTTACTCCGTGGCCTTGGCTGGCATGGAACTTGCTGGCTAGGTATATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCGTGGCCTTGGCTGGCATGGAACTTGCTGGCTAGGTATATATT  150

seq1  ACTGCCCTAAATCTCACAGAAATCACCTGCCTCTGCTTTCTGTGTACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCTAAATCTCACAGAAATCACCTGCCTCTGCTTTCTGTGTACTGA  200

seq1  CATTAAAAGTGTGAACCCACATACCTTGATTTATAATTTTGTTATCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAGTGTGAACCCACATACCTTGATTTATAATTTTGTTATCTGTC  250

seq1  CTTGTTTTCCCATATTTTTTTAAATTTGTGATTCCTCATGATACATGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTCCCATATTTTTTTAAATTTGTGATTCCTCATGATACATGATT  300

seq1  ATTTCGCTTATTAGTCATTATTCTTTTTTATTATTTGTATACATTTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGCTTATTAGTCATTATTCTTTTTTATTATTTGTATACATTTGTAA  350

seq1  TTTGGTTGCTCATATTTTTTACCTGTTTTTAATTAACTTATACTCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGCTCATATTTTTTACCTGTTTTTAATTAACTTATACTCCTGTC  400

seq1  ATTACATTAAAAGATGTTTGCACATTTTTTTTTTTGTATGCAAGACGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTAAAAGATGTTTGCACATTTTTTTTTTTGTATGCAAGACGTGT  450

seq1  ATCAAATAAGTGTTTTGCAAATACTTTCCTAAGTTTGTAACATCCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAAGTGTTTTGCAAATACTTTCCTAAGTTTGTAACATCCTGTTT  500

seq1  GATTATTTTAATAATGTTTGAGGCAGAACAGAACCTTCATTTTATTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTAATAATGTTTGAGGCAGAACAGAACCTTCATTTTATTGTCA  550

seq1  TATGCTGCACTGAGAAATTTCTACCAGCGTGAGATTTCATGTCCTCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGCACTGAGAAATTTCTACCAGCGTGAGATTTCATGTCCTCCCAT  600

seq1  ATTGCCTGACAGCACTTCATACAGCTGGGTCTCCTTACACCAAAGCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGACAGCACTTCATACAGCTGGGTCTCCTTACACCAAAGCATTG  650

seq1  CAAAGTATCCTCCTGCTGCTCCGTTTAATTTCTTGTTTTGATTATCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATCCTCCTGCTGCTCCGTTTAATTTCTTGTTTTGATTATCATGG  700

seq1  CCCATTGCTAATTTTCACAGTTGGAGGTCACAGAAAACAACTGACCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGCTAATTTTCACAGTTGGAGGTCACAGAAAACAACTGACCTGGA  750

seq1  ATTGATATTAAAAGTGATTAAGGACTATGAAGGCTGAAATTCAATAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATTAAAAGTGATTAAGGACTATGAAGGCTGAAATTCAATAGTGG  800

seq1  ATAATGCACACCAGAAAAAAACAAGTCTATTGTAGAGCAGGTGCAATAAT  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAATGCACACCAGAAAAAAACAAGTCTATTGTAGAGCA-GTGCAATAAT  849

seq1  GAAGCATAAGAACAAAGAATTAAAAGATTTTCAATGTACCTCATTGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATAAGAACAAAGAATTAAAAGATTTTCAATGTACCTCATTGAAGT  899

seq1  CAATGAGAAATGAAAATCTTGTAAAAGCCTTAACTGATATAAAGGCTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGAAATGAAAATCTTGTAAAAGCCTTAACTGATATAAAGGCTAAG  949

seq1  TATTTCCATGTCATGGTGACCACAACTGGCATCTCTTGGGTTGAAAGGTA  1000
      || |||||||||||||||||||||||||||||||||  || ||||||   
seq2  TA-TTCCATGTCATGGTGACCACAACTGGCATCTCT--GGGTGAAAG--T  994

seq1  ACACTAGACCTGACCAAAATATTAAAGTAATGCTAGTTGTCTTTAATGAT  1050
      ||||||||||||||| |||||||||||||||||||| |||| ||||||| 
seq2  ACACTAGACCTGACC-AAATATTAAAGTAATGCTAG-TGTC-TTAATGA-  1040

seq1  AACAGAATCATAATTTACTATTTAAGTGATAACT-CTATTGATAATGCTA  1099
      ||| |||||||||||||||| ||||| ||||||| ||||||| |||||||
seq2  AACCGAATCATAATTTACTA-TTAAG-GATAACTCCTATTGAAAATGCTA  1088

seq1  ACAAGTTAAGCTAGCTGATAACCTTTTGGAAACTGTAAGCTTAGTCCAGA  1149
      ||||||||||||||||||||||| ||||||| |||||||| ||||||| |
seq2  ACAAGTTAAGCTAGCTGATAACC-TTTGGAACCTGTAAGCCTAGTCCAAA  1137

seq1  -ACAAGATTA-CATCCCGCGTGGCAGTGGTGGTGCACGGCTTTAATCCCA  1197
       ||| || || |||||||||  ||| ||  |||||||| |||| ||||  
seq2  CACAGGAATACCATCCCGCGGTGCAATGTGGGTGCACGCCTTT-ATCCAG  1186

seq1  GCATTTGGGAGGC  1210
       ||||| ||||||
seq2  ACATTT-GGAGGC  1198

seq1: chr2_96824290_96824806
seq2: B6Ng01-090K10.g_609_756 (reverse)

seq1  TCCCCAACCCACCCACCCCCCCCCACTATAATGAAAGCTATTTTCCATTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTAAAATTGAAGTGTCCTAAGTGTTTCACATTCAGGGAATACGTTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTCAGTTTTAGCAATCATTAGTAAAATGAGCAAACAAAAATAGTTTAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTTTTACAAATCAGGTAGCACCTTATAATTCATGTGTGTGTTCCTGGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTATGATTATGGCAAGCAAAACAACTTAGAGAATCCCAAGAAAAGACT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TCATTAACTCTTTTTAAATTTTTTTTATTGCTTATTTTGTTTACTTACAT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAAATGTTATCTCCCTTCCTGATTTCCTCTCTGAAAACCCCCTATCAT  350
                                                        
seq2  --------------------------------------------------  0

seq1  ATCCCTTCTTCCACAAGAGTACTTCCCCACCCAATTGCCCACT-CCTGCC  399
               ||| |||         ||||||||    || ||| ||||||
seq2  ---------TCCCCAA---------CCCACCCA----CCTACTCCCTGCC  28

seq1  CCAC--TGCCCTAGTATTCCTCTACACTGGGGCATCAAGCCTTCACAAGA  447
       |||   | ||||| || |  |||  ||||| ||||||| || || | ||
seq2  TCACCTAGTCCTAGCATCCACCTATGCTGGGTCATCAAGTCTCCAGAGGA  78

seq1  TCAAAGGCCTCTCCCGTCTTTGATGCCAAACAAGGCCATTATCTGCTACA  497
       | |   ||||||    |    ||||| |  ||||| ||| |||||||||
seq2  CCCAGACCCTCTCTTCCCACCAATGCCCATAAAGGCGATTCTCTGCTACA  128

seq1  TATGCAGCTAGAGCCATGGG  517
      ||||||||||||||||||||
seq2  TATGCAGCTAGAGCCATGGG  148