BAC Information

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BAC

Clone NameB6Ng01-090M09
Chromosome2 (Build37)
Map Location 96,346,904 - 96,564,920
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090M09.bB6Ng01-090M09.g
ACCDH902987DH902988
length1,118831
definitionDH902987|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M09, 5' end.DH902988|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,346,904 - 96,348,029)(96,564,200 - 96,564,920)
sequence
gaattctagggtcatcctgtctaccacaatggtgtttccactccaggtcc
ccatcactagaccctggagatgactctgctggccttaatgtatgagttca
gttcctttaaacatggacgttttaaatgatcgttatctcatgacactcca
tcattgaaaaacaccccttagatttcagcatgtcttccaatgtctttcag
gtgctaagcttggctgctgctgcagtacccaacttctggtctcctcactt
gttcctatcttgtctttagccacttcaccttttccttgcagggcaagtat
gtcactatgtcaaaatgtattcttcccatgactgcatctatctttcttct
gggtactctagccctgcactgctgatttcacgtttctccttaaatgtatt
ttgctatttttatcatacatttgtttactgtacttttccttccaaaatgt
ttgatttatatgtataagctaaaatacgttttgcgtatttagtatacata
ctttgattaacatcatgtgttcccatgtctgtggtttcatctccacaaag
tatatacacatctatcagctctgaaattatccttgcctcctgttgtattc
aatatgcataatactggtttttgtgtatatatgcatgatgtgtaagtgtg
catgccataacatgcctgtagaggtaagaggacagcttttggaaattcat
tttcttcttccacccttacatgggttctgggagtcaaattgaggtcatga
cgatcatgcagcaagtgtttaatccgtgaggccatctcactggctcttat
tcagcattcttttacagtaagaatacttaacatgaaaaaaaaatcctttg
aatgtactttaaagtagatacttcatgctattatcctaaaggattgctat
gtagtagatatctagagcttattaatcctgtataaccaaactttttatgc
actatacaatattcctatttttatccatttcacacataaatggaatatat
tttgagcctttttctttgactctgtagatgttttaatacactggaatcat
gcattattgatcattggttgtgtattttttaccagcccagtgcttcacag
tcataatattgttactaa
tgtttatggagtacatgtatgtggggatacatactcatgagtgtgcaagt
gcatgtttggtgtgtaagtatgtgcacatttaaagaagtatgtatggaag
acagaaggtaatctccaatgatattcttttgaagctgcacaaaatatctc
attcttgaataattttcccttcagttatttcattcatgaagaaaatgaac
ttagataatattcaccctacaattctattaccatcattcccttctctaga
tcacctttctctctctctctctttctctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttcattttgcaactgatttactttaactaatattgctcatattcct
aaaggtataaggtacctttaggtggagcatgtgaaatctacaatggacta
cactgttgaagaaaatgaaaatttcctcctgaagcaactaacagcttcca
atagcttctcatctgaagtgctggctggcttaattttaaataggtcttgt
actggaagcctcagattttgtgagtcccttgtgagtcccttggccttacc
atgtcctgaagacattattttgaagtatcttccctgacctctagttctta
ccatctttctgccatcttgttcacaatgtttcctgaaccttaggtagatg
agataggaaatagatgtcctagtcagggctaccaactccagttcaatatt
atctgttctttgatagcttaagtctattaattaactgccatcaactacat
aaaattttctcttgagggatgagagctctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_96346904_96348029
seq2: B6Ng01-090M09.b_47_1164

seq1  GAATTCTAGGGTCATCCTGTCTACCACAATGGTGTTTCCACTCCAGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGTCATCCTGTCTACCACAATGGTGTTTCCACTCCAGGTCC  50

seq1  CCATCACTAGACCCTGGAGATGACTCTGCTGGCCTTAATGTATGAGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTAGACCCTGGAGATGACTCTGCTGGCCTTAATGTATGAGTTCA  100

seq1  GTTCCTTTAAACATGGACGTTTTAAATGATCGTTATCTCATGACACTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTAAACATGGACGTTTTAAATGATCGTTATCTCATGACACTCCA  150

seq1  TCATTGAAAAACACCCCTTAGATTTCAGCATGTCTTCCAATGTCTTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAAAAACACCCCTTAGATTTCAGCATGTCTTCCAATGTCTTTCAG  200

seq1  GTGCTAAGCTTGGCTGCTGCTGCAGTACCCAACTTCTGGTCTCCTCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAGCTTGGCTGCTGCTGCAGTACCCAACTTCTGGTCTCCTCACTT  250

seq1  GTTCCTATCTTGTCTTTAGCCACTTCACCTTTTCCTTGCAGGGCAAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATCTTGTCTTTAGCCACTTCACCTTTTCCTTGCAGGGCAAGTAT  300

seq1  GTCACTATGTCAAAATGTATTCTTCCCATGACTGCATCTATCTTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTATGTCAAAATGTATTCTTCCCATGACTGCATCTATCTTTCTTCT  350

seq1  GGGTACTCTAGCCCTGCACTGCTGATTTCACGTTTCTCCTTAAATGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTCTAGCCCTGCACTGCTGATTTCACGTTTCTCCTTAAATGTATT  400

seq1  TTGCTATTTTTATCATACATTTGTTTACTGTACTTTTCCTTCCAAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTTTTATCATACATTTGTTTACTGTACTTTTCCTTCCAAAATGT  450

seq1  TTGATTTATATGTATAAGCTAAAATACGTTTTGCGTATTTAGTATACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATATGTATAAGCTAAAATACGTTTTGCGTATTTAGTATACATA  500

seq1  CTTTGATTAACATCATGTGTTCCCATGTCTGTGGTTTCATCTCCACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTAACATCATGTGTTCCCATGTCTGTGGTTTCATCTCCACAAAG  550

seq1  TATATACACATCTATCAGCTCTGAAATTATCCTTGCCTCCTGTTGTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACACATCTATCAGCTCTGAAATTATCCTTGCCTCCTGTTGTATTC  600

seq1  AATATGCATAATACTGGTTTTTGTGTATATATGCATGATGTGTAAGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCATAATACTGGTTTTTGTGTATATATGCATGATGTGTAAGTGTG  650

seq1  CATGCCATAACATGCCTGTAGAGGTAAGAGGACAGCTTTTGGAAATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCATAACATGCCTGTAGAGGTAAGAGGACAGCTTTTGGAAATTCAT  700

seq1  TTTCTTCTTCCACCCTTACATGGGTTCTGGGAGTCAAATTGAGGTCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTCCACCCTTACATGGGTTCTGGGAGTCAAATTGAGGTCATGA  750

seq1  CGATCATGCAGCAAGTGTTTAATCCGTGAGGCCATCTCACTGGCTCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCATGCAGCAAGTGTTTAATCCGTGAGGCCATCTCACTGGCTCTTAT  800

seq1  TCAGCATTCTTTTACAGTAAGAATACTTAACATGAAAAAAAAATCCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTCTTTTACAGTAAGAATACTTAACATGAAAAAAAAATCCTTTG  850

seq1  AATGTACTTTAAAGTAGATACTTCATGCTATTATCCT-AAGGATTGCTAT  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATGTACTTTAAAGTAGATACTTCATGCTATTATCCTAAAGGATTGCTAT  900

seq1  GTAGTAGATATCTAGAGCTTATTAATCCTGTATAACCAAAACTTTTTATG  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTAGTAGATATCTAGAGCTTATTAATCCTGTATAACC-AAACTTTTTATG  949

seq1  CACTATACAATATTCCTATTTTTATCCATTTCACACATAAATGGAATATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATACAATATTCCTATTTTTATCCATTTCACACATAAATGGAATATA  999

seq1  TTTTGAGCCTTTTATTCTTTGACTCTTGTAGATGTTTT-ATACAACTGGA  1048
      ||||||||||||  ||||||||||| |||||||||||| |||| ||||||
seq2  TTTTGAGCCTTT--TTCTTTGACTC-TGTAGATGTTTTAATAC-ACTGGA  1045

seq1  ATCATGCATTATTGATCATTTGTATGTGGTATTTTTTACCAGCACAGTGG  1098
      |||||||||||||||||||| || ||| ||||||||||||||| ||||| 
seq2  ATCATGCATTATTGATCATTGGT-TGT-GTATTTTTTACCAGCCCAGTGC  1093

seq1  TTTCCACAGTCATATATATTGTTACTAA  1126
      ||  |||||||||| |||||||||||||
seq2  TT--CACAGTCATA-ATATTGTTACTAA  1118

seq1: chr2_96564200_96564920
seq2: B6Ng01-090M09.g_74_798 (reverse)

seq1  TGACTAGGACATCTATTTCCTATCTCATCTACCTAAGGTTCAGGAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGGACATCTATTTCCTATCTCATCTACCTAAGGTTCAGGAAACAT  50

seq1  TGTGAACAAGATGGCAGAAAGATGGTAAGAACTAGAGGTCAGGGAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACAAGATGGCAGAAAGATGGTAAGAACTAGAGGTCAGGGAAGATA  100

seq1  CTTCAAAATAATGTCTTCAGGACATGGTAAGGCCAAGGGACTCACAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAATAATGTCTTCAGGACATGGTAAGGCCAAGGGACTCACAAGGG  150

seq1  ACTCACAAAATCTGAGGCTTCCAGTACAAGACCTATTTAAAATTAAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAAATCTGAGGCTTCCAGTACAAGACCTATTTAAAATTAAGCCA  200

seq1  GCCAGCACTTCAGATGAGAAGCTATTGGAAGCTGTTAGTTGCTTCAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACTTCAGATGAGAAGCTATTGGAAGCTGTTAGTTGCTTCAGGAG  250

seq1  GAAATTTTCATTTTCTTCAACAGTGTAGTCCATTGTAGATTTCACATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTCATTTTCTTCAACAGTGTAGTCCATTGTAGATTTCACATGCT  300

seq1  CCACCTAAAGGTACCTTATACCTTTAGGAATATGAGCAATATTAGTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAAAGGTACCTTATACCTTTAGGAATATGAGCAATATTAGTTAAA  350

seq1  GTAAATCAGTTGCAAAAT----GAAAGAAAGAAAGAAAGAAAGAAAGAAA  396
      ||||||||||||||||||    ||||||||||||||||||||||||||||
seq2  GTAAATCAGTTGCAAAATGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  400

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  450

seq1  GAAAGAGAGAGAGAGAGAAAGGTGATCTAGAGAAGGGAATGATGGTAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGAGAGAGAGAAAGGTGATCTAGAGAAGGGAATGATGGTAATA  500

seq1  GAATTGTAGGGTGAATATTATCTAAGTTCATTTTCTTCATGAATGAAATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTAGGGTGAATATTATCTAAGTTCATTTTCTTCATGAATGAAATA  550

seq1  ACTGAAGGGAAAATTATTCAAGAATGAGATATTTTGTGCAGCTTCAAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGGAAAATTATTCAAGAATGAGATATTTTGTGCAGCTTCAAAAG  600

seq1  AATATCATTGGAGATTACCTTCTGTCTTCCATACATACTTCTTTAAATGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTGGAGATTACCTTCTGTCTTCCATACATACTTCTTTAAATGT  650

seq1  GCACATACTTACACACCAAACATGCACTTGCACACTCATGAGTATGTATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACTTACACACCAAACATGCACTTGCACACTCATGAGTATGTATC  700

seq1  CCCACATACATGTACTCCATAAACA  721
      |||||||||||||||||||||||||
seq2  CCCACATACATGTACTCCATAAACA  725