BAC Information

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BAC

Clone NameB6Ng01-090M22
Chromosome2 (Build37)
Map Location 171,872,699 - 171,912,336
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043743, LOC100043744, Cbln4
Downstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090M22.bB6Ng01-090M22.g
ACCDH903011DH903012
length1,0581,054
definitionDH903011|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M22, 5' end.DH903012|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,872,699 - 171,873,764)(171,911,270 - 171,912,336)
sequence
gaattcatctctgtttcacatctctgtagctgggcttaacttctccactt
gaaaacaaattacgtctcctacgggaacttagtgttgagagagccaagac
aggcaggatccaggggggagctgcttcagaagatggtgtctgtgagaagg
cggacaggcacgcgaggcactgggttcggaagaactcgcctggctcggag
tgactaaagactccaagcatcctgtccagacagcctcgggtcagtcacgc
aggcggggtgggaaagcgagagcacgtgagcccaaggttcgtgtcccagc
cggtcgaagctccctgagttgattaattacccctcctttaaagtgatagc
taagaaagatagaccaagaaaatgttttgttttgttttgttttgttccat
tgagtgaaagtaaatggcttatggagagcaaagccctgagaagaaagaag
aagaatgtgaggaccacaacgttccagagctatgccagacttatcccggt
ggttccttctggagacaacaaagtggtaggcgatttagtaaagatggtgc
tatcgagaacactagatgatgatttcatgatctttcagtttaatttacca
tttaaagcctgcctgagattttcctcttcccacctcaatgtcagccaaga
agatcggagttgaagttgtcagtgtgcggtgaggtggcttggccgccatg
gcggtcacattttgactctctgttttggctttcccatagtgcgctatgtt
tgccctgtcgatctatttattacaatgtcaagttattgcgtttttgctgt
gttttccgtgggctatgaactccctcaggagcacaggatttagtggcgag
tggagatgactaaataagtgttactgagcgggggggaaaaaaaaaacaaa
acacttaccactgctctgagatttctcgttgtacaaacagtatcaattga
aacactgccatgtaagaggaaagaggaaagtctttcagaagtgagagagc
ttgagatgttgagtccactctctgctactggtgtgacattgatgttggcg
tgataaaa
gaattctacactctctaggcaaggaagatgactatgtaacgtcataggag
aacaggatcttgggaaatgtttccagcaccatccatcgaaggcttgcctt
ctctgctgagttcccggagtacttttataaggctcatcagtcctgtggtg
tccccagtgaagagatcaaactgaaaaagatgtggaaagccaatacactc
atcaacactctacagttttttaacttgctggcaattttctgtggatcatt
aaatccccgaatatgagactccctcattgatatgtgggtcatgtaaaaca
ggctcgcacacaatcactatttccatggtctctccatccctgagtccctg
aacagcatttgtgctggtcatgataatttttctcattctacctttggctc
aactctctaacactgagtggtctgctgcatgcaacaaaatgatttctgta
aaaccttgcatatgcatgcaaggacgaaaatgttttccttcatttccagc
ctggctttcttgaatacatcccacggcagtagactctcctgtgctcttca
ggatccggtcacttctgaggtgccagggtgcagaccacattcacaggagt
catggctgggtgtggtcataaggagatccagggcatggataacaaggtcg
attacttttgtagcaccttgaaacattgtactgtgttccagcacttaaag
agtcagcgggaaaacatgtctgtctgtctttttttttttttttttttttt
ttttttttcttttgcgagaatagggttttttctgtgtagtcttagctgtg
tctggaaatccactcttgtaaacacaggctgggcctccgactcagaaaac
cacctgcctcttgcctcccaagtgctgggattaaaggtgtgtgccaccac
gccccacccctgtcttgtctttcttaaagggatcaaggtagaagtgaatg
tgagcacatttgttgatcatgctgacttccttcgattagtcaagactcct
ggagttttgctgggcttccagcaaaaacagatgctgttttatgtctgcat
taaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_171872699_171873764
seq2: B6Ng01-090M22.b_48_1105

seq1  GAATTCATCTCTGTTTCACATCTCTGTAGCTGGGCTTAACTTCTCCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTGTTTCACATCTCTGTAGCTGGGCTTAACTTCTCCACTT  50

seq1  GAAAACAAATTACGTCTCCTACGGGAACTTAGTGTTGAGAGAGCCAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAATTACGTCTCCTACGGGAACTTAGTGTTGAGAGAGCCAAGAC  100

seq1  AGGCAGGATCCAGGGGGGAGCTGCTTCAGAAGATGGTGTCTGTGAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGATCCAGGGGGGAGCTGCTTCAGAAGATGGTGTCTGTGAGAAGG  150

seq1  CGGACAGGCACGCGAGGCACTGGGTTCGGAAGAACTCGCCTGGCTCGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACAGGCACGCGAGGCACTGGGTTCGGAAGAACTCGCCTGGCTCGGAG  200

seq1  TGACTAAAGACTCCAAGCATCCTGTCCAGACAGCCTCGGGTCAGTCACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAAGACTCCAAGCATCCTGTCCAGACAGCCTCGGGTCAGTCACGC  250

seq1  AGGCGGGGTGGGAAAGCGAGAGCACGTGAGCCCAAGGTTCGTGTCCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGGTGGGAAAGCGAGAGCACGTGAGCCCAAGGTTCGTGTCCCAGC  300

seq1  CGGTCGAAGCTCCCTGAGTTGATTAATTACCCCTCCTTTAAAGTGATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCGAAGCTCCCTGAGTTGATTAATTACCCCTCCTTTAAAGTGATAGC  350

seq1  TAAGAAAGATAGACCAAGAAAATGTTTTGTTTTGTTTTGTTTTGTTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGATAGACCAAGAAAATGTTTTGTTTTGTTTTGTTTTGTTCCAT  400

seq1  TGAGTGAAAGTAAATGGCTTATGGAGAGCAAAGCCCTGAGAAGAAAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAAGTAAATGGCTTATGGAGAGCAAAGCCCTGAGAAGAAAGAAG  450

seq1  AAGAATGTGAGGACCACAACGTTCCAGAGCTATGCCAGACTTATCCCGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTGAGGACCACAACGTTCCAGAGCTATGCCAGACTTATCCCGGT  500

seq1  GGTTCCTTCTGGAGACAACAAAGTGGTAGGCGATTTAGTAAAGATGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTCTGGAGACAACAAAGTGGTAGGCGATTTAGTAAAGATGGTGC  550

seq1  TATCGAGAACACTAGATGATGATTTCATGATCTTTCAGTTTAATTTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGAGAACACTAGATGATGATTTCATGATCTTTCAGTTTAATTTACCA  600

seq1  TTTAAAGCCTGCCTGAGATTTTCCTCTTCCCACCTCAATGTCAGCCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCCTGCCTGAGATTTTCCTCTTCCCACCTCAATGTCAGCCAAGA  650

seq1  AGATCGGAGTTGAAGTTGTCAGTGTGCGGTGAGGTGGCTTGGCCGCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGGAGTTGAAGTTGTCAGTGTGCGGTGAGGTGGCTTGGCCGCCATG  700

seq1  GCGGTCACATTTTGACTCTCTGTTTTGGCTTTCCCATAGTGCGCTATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCACATTTTGACTCTCTGTTTTGGCTTTCCCATAGTGCGCTATGTT  750

seq1  TGCCCTGTCGATCTATTTATTACAATGTCAAGTTATTGCGTTTTTGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTCGATCTATTTATTACAATGTCAAGTTATTGCGTTTTTGCTGT  800

seq1  GTTTTCCGTGGGCTATGAACTCCCTCAGGAGCACAGGATTTAGTGGCGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCGTGGGCTATGAACTCCCTCAGGAGCACAGGATTTAGTGGCGAG  850

seq1  TGGAGATGACTAAATAAGTGTTTACTGAGCGGGGGGG-AAAAAAAAACAA  899
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  TGGAGATGACTAAATAAGTG-TTACTGAGCGGGGGGGAAAAAAAAAACAA  899

seq1  AACACTTACCACTGCTCTGAGATTTCTCGTTGTACAAACAGTATCAATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTACCACTGCTCTGAGATTTCTCGTTGTACAAACAGTATCAATTG  949

seq1  AAACCACTGCCAATGTAAGAGGAAAGAGGAAAGTCTTTCAGAAAGTTGAG  999
      ||| ||||||| |||||||||||||||||||||||||||||||   ||||
seq2  AAA-CACTGCC-ATGTAAGAGGAAAGAGGAAAGTCTTTCAGAA--GTGAG  995

seq1  AGGAGCTTGAGATGTTGAGTCCACTCTCTGCTACTGGGTTGGTGACATTG  1049
      | |||||||||||||||||||||||||||||||||||    |||||||||
seq2  A-GAGCTTGAGATGTTGAGTCCACTCTCTGCTACTGG---TGTGACATTG  1041

seq1  ATGTTGCCGTGATAAAA  1066
      |||||| ||||||||||
seq2  ATGTTGGCGTGATAAAA  1058

seq1: chr2_171911270_171912336
seq2: B6Ng01-090M22.g_70_1123 (reverse)

seq1  TTTAATGCAAGGACCATTAAAACAGCATCCTGTTTTTGCTGTGATAGCTC  50
      |||||||||  |||   ||||||||||| |||||||||||| || ||  |
seq2  TTTAATGCA--GAC--ATAAAACAGCAT-CTGTTTTTGCTG-GA-AG--C  41

seq1  CAAGCAAAAACTCCAGGAGTCTGGACTAAATCGAAGGGAAAGTCAGCATG  100
      | ||| |||||||||||||||| |||| |||||||||  |||||||||||
seq2  CCAGC-AAAACTCCAGGAGTCTTGACT-AATCGAAGG--AAGTCAGCATG  87

seq1  ATTCAGACAAATGTGCTCACACTTCAACTTCCTACCCCTTGATCCCTTTA  150
      | ||| ||||||||||||||| ||| |||| |||  ||||||||||||||
seq2  A-TCA-ACAAATGTGCTCACA-TTC-ACTT-CTA--CCTTGATCCCTTTA  130

seq1  AGAAAGAC-AGACAGGGCT-GGGCGTGGTGGCACACACCTTTAATCCCAG  198
      |||||||| |||||||| | ||||||||||||||||||||||||||||||
seq2  AGAAAGACAAGACAGGGGTGGGGCGTGGTGGCACACACCTTTAATCCCAG  180

seq1  CACTTGTGAGGC-AGAGGCAGGTGGATTTCTGAGTTCGAGG-CCAGCCTG  246
      |||||| ||||| |||||||||||| |||||||||  |||| ||||||||
seq2  CACTTGGGAGGCAAGAGGCAGGTGGTTTTCTGAGTCGGAGGCCCAGCCTG  230

seq1  -GTCTAC-AGAGT-GAGTTCCAG-GACAGCTAAGACTACACAG-AAAAAC  291
       || ||| ||||| || ||||||  |||||||||||||||||| ||||||
seq2  TGTTTACAAGAGTGGATTTCCAGACACAGCTAAGACTACACAGAAAAAAC  280

seq1  CCTA-TCTCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG  340
      |||| ||||||   |||| |||||||||||||||||||||||||||||||
seq2  CCTATTCTCGC---AAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG  327

seq1  ACAGACAGACATGTTTTCCCGCTGACTCTTTAAGTGCTGGAACACAGTAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACATGTTTTCCCGCTGACTCTTTAAGTGCTGGAACACAGTAC  377

seq1  AATGTTTCAAGGTGCTACAAAAGTAATCGACCTTGTTATCCATGCCCTGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCAAGGTGCTACAAAAGTAATCGACCTTGTTATCCATGCCCTGG  427

seq1  ATCTCCTTATGACCACACCCAGCCATGACTCCTGTGAATGTGGTCTGCAC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTATGACCACACCCAGCCATGACTCCTGTGAATGTGGTCTGCAC  477

seq1  CCTGGCACCTCAGAAGTGACCGGATCCTGAAGAGCACAGGAGAGTCTACT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACCTCAGAAGTGACCGGATCCTGAAGAGCACAGGAGAGTCTACT  527

seq1  GCCGTGGGATGTATTCAAGAAAGCCAGGCTGGAAATGAAGGAAAACATTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGGGATGTATTCAAGAAAGCCAGGCTGGAAATGAAGGAAAACATTT  577

seq1  TCGTCCTTGCATGCATATGCAAGGTTTTACAGAAATCATTTTGTTGCATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCTTGCATGCATATGCAAGGTTTTACAGAAATCATTTTGTTGCATG  627

seq1  CAGCAGACCACTCAGTGTTAGAGAGTTGAGCCAAAGGTAGAATGAGAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGACCACTCAGTGTTAGAGAGTTGAGCCAAAGGTAGAATGAGAAAA  677

seq1  ATTATCATGACCAGCACAAATGCTGTTCAGGGACTCAGGGATGGAGAGAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATGACCAGCACAAATGCTGTTCAGGGACTCAGGGATGGAGAGAC  727

seq1  CATGGAAATAGTGATTGTGTGCGAGCCTGTTTTACATGACCCACATATCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAATAGTGATTGTGTGCGAGCCTGTTTTACATGACCCACATATCA  777

seq1  ATGAGGGAGTCTCATATTCGGGGATTTAATGATCCACAGAAAATTGCCAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGAGTCTCATATTCGGGGATTTAATGATCCACAGAAAATTGCCAG  827

seq1  CAAGTTAAAAAACTGTAGAGTGTTGATGAGTGTATTGGCTTTCCACATCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAAAAAACTGTAGAGTGTTGATGAGTGTATTGGCTTTCCACATCT  877

seq1  TTTTCAGTTTGATCTCTTCACTGGGGACACCACAGGACTGATGAGCCTTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTTTGATCTCTTCACTGGGGACACCACAGGACTGATGAGCCTTA  927

seq1  TAAAAGTACTCCGGGAACTCAGCAGAGAAGGCAAGCCTTCGATGGATGGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTACTCCGGGAACTCAGCAGAGAAGGCAAGCCTTCGATGGATGGT  977

seq1  GCTGGAAACATTTCCCAAGATCCTGTTCTCCTATGACGTTACATAGTCAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAACATTTCCCAAGATCCTGTTCTCCTATGACGTTACATAGTCAT  1027

seq1  CTTCCTTGCCTAGAGAGTGTAGAATTC  1067
      |||||||||||||||||||||||||||
seq2  CTTCCTTGCCTAGAGAGTGTAGAATTC  1054