BAC Information

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BAC

Clone NameB6Ng01-090N18
Chromosome2 (Build37)
Map Location 70,670,589 - 70,799,003
singlet/doubletdoublet
Overlap genenone
Upstream geneKlhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1
Downstream geneMettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090N18.bB6Ng01-090N18.g
ACCDH903047DH903048
length1,1221,080
definitionDH903047|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N18, 5' end.DH903048|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,797,877 - 70,799,003)(70,670,589 - 70,671,675)
sequence
gaattctaaccctcctcacatccataaagctagaccatggttagcagaag
ctgatgtttaaagatcccttttccaagggagccgcacttcagagagtcca
ttttccccaacaggaaaaggtatgttcctttgtcttccacattggttaaa
agtacggtctccattttcaccaattctgaaagttaccttggagcactgtc
tgcctggaaacatcctcccatgaagctctgcttgagaaggtttcgaggct
actcattaggggtctctgttacacatctcccattgtgcactggaacactc
agttgccattgacttctgctaacatacttgtgcgagttccctatgcagcg
tctccaaactgagaatacatcccgatttctaccattaagtacttgtaaat
cattgctacacattagttggtgtgtgaaaatagctatcttcctgggggct
ggggggggggggcacacaaaagccagagtcacatgaacgtctgcatcgtc
tcattctctccctgaactgcttcaccccacctctgtggttttccatctcc
taaggtctgaagcctgaatagatcagctttgttacctaattggttctgat
gttggttatgctcctcacaggagcagttgacttcacatttgcatcgctaa
tagccctctttgagagcctctgcccctcctgcctgcctctgctagtcatc
agtagactacacacacacacacacacacacacacacacacacacgttgag
ggtactttcccctcttgtggaagcacattgtaaatcctaagcactgaata
tgggagggtgttgttattaataatagcgtctacaatctacaagggcagcg
gtgcacacagcactcaacatgtactttttcaatgctttttgagacactga
gagaacaacagtactgtgctgtgggaaaggtatgcctggggagtctccag
gaaaaagaataggttccaggtcccattgaacacttcactactctccattc
agctctgagtgctgatttgttacagtaggtactcatttgattcccagagc
ctatgaatagctgttactggggcatttaacagatgaggcggggtgctctg
gaatctcggtaactcgccagga
gaattcctatgggataattgcctccatcagatttgacctgtgggcatgtc
tacaggggtcattttcttaattactgatggatgagggagggtccagctca
ctattgtcagccccatccactgactggaggtcctggggtgtgtaaggaag
gcatttaagcaacctaagaaaacagccaataagcagtattcctccatggg
ctctgcttcagttctggccatcaggtgtctgccctgagctcctcctactc
tgctatcccttgatgggggactctaacctctaagaggaactaaattcttc
cctcccaggttgtttttggtcatagtgttcatcacagcaacagaaaccaa
actaagacatgtgtatatccataaatacattcagaaactctgacacaatg
cgggaatgtcaaatatattgagactctcttcccaccactagtacctcatc
ctcttcttgatccatctccttctctcaggaaagcggtccaaatgccagag
taagagagaggtatctgggctgcaagggagactttgtttctgcatgtggt
ataggttagaagtgcaagttcagttttgaaaagtcatctagtggtgaatt
taaaaggagacagagacagagacagaaacagagagagacagagacagaga
gagacacacagagagagacacagagagagagagagagacagagacagaaa
gaaagaagagaagagaagagaagaggagaggagaggagaggagaggagag
aagagaagagaagagagctgacaccatggttctaagtgtttttctataca
cccaggaaacatatctgttgttgcaagtattcaataagaaaatggaaagt
agcattaaaaacaacaaaacttgttagtggtgagaggaggatgaatggtg
ctttcttgtgggcaggaaaggaaaaaccaatgtctttaaaataataagca
taccatgagttgtaatgtacgtggaaatgaaaggcaccaccatgccgagt
cctcaagctgaggtatctactgagcttgatcctaccttgggcactggtta
gtgcgtgtttgcaattgccttaccctgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_70797877_70799003
seq2: B6Ng01-090N18.b_49_1170 (reverse)

seq1  TCCTGGGCGAGTTACCGAGGATTTCAGAGCA-CCCGCCTCATCTGTTAAA  49
      |||| ||||||||||||| |||| ||||||| ||||||||||||||||||
seq2  TCCT-GGCGAGTTACCGA-GATTCCAGAGCACCCCGCCTCATCTGTTAAA  48

seq1  TGGCCCCAGTAACAGCTAATTCATAGGCTCTTGGGAATCAAATGAAGTAC  99
      | ||||||||||||||| |||||||||||| ||||||||||||| |||||
seq2  T-GCCCCAGTAACAGCT-ATTCATAGGCTC-TGGGAATCAAATG-AGTAC  94

seq1  CTACTGTATACAAAATCAGCACTCAGAGCTGAATGGAGAGTAGTGAAGTG  149
      |||||||| || ||||||||||||||||||||||||||||||||||||| 
seq2  CTACTGTA-AC-AAATCAGCACTCAGAGCTGAATGGAGAGTAGTGAAGT-  141

seq1  GTTCAATGGGACCTGGAACCTATTCTTTTCCTGGGAGACT-CCCAGGCAA  198
      ||||||||||||||||||||||||||||| |  ||||||| ||||||| |
seq2  GTTCAATGGGACCTGGAACCTATTCTTTTTCCTGGAGACTCCCCAGGC-A  190

seq1  TACCTTTCCCACAGCACAGTACTGTTGTTCTCTCAGTGTCTCAAAAAGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCCCACAGCACAGTACTGTTGTTCTCTCAGTGTCTCAAAAAGCA  240

seq1  TTGAAAAAGTACATGTTGAGTGCTGTGTGCA-CGCTG-CCTTGTAGATTG  296
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  TTGAAAAAGTACATGTTGAGTGCTGTGTGCACCGCTGCCCTTGTAGATTG  290

seq1  TAGACGCTATTATTAATAACAACA-CCTCCCATATTCAGTGCTTAGGATT  345
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGACGCTATTATTAATAACAACACCCTCCCATATTCAGTGCTTAGGATT  340

seq1  TACAATGTGCTTCCACAAGAGGGGAAAGTACCCTCAACGTGTGTGTGTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGTGCTTCCACAAGAGGGGAAAGTACCCTCAACGTGTGTGTGTGT  390

seq1  GTGTGTGTGTGTGTGTGTGTGTGTAGTCTACTGATGACTAGCAGAGGCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTAGTCTACTGATGACTAGCAGAGGCAG  440

seq1  GCAGGAGGGGCAGAGGCTCTCAAAGAGGGCTATTAGCGATGCAAATGTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGGGCAGAGGCTCTCAAAGAGGGCTATTAGCGATGCAAATGTGA  490

seq1  AGTCAACTGCTCCTGTGAGGAGCATAACCAACATCAGAACCAATTAGGTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTGCTCCTGTGAGGAGCATAACCAACATCAGAACCAATTAGGTA  540

seq1  ACAAAGCTGATCTATTCAGGCTTCAGACCTTAGGAGATGGAAAACCACAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTGATCTATTCAGGCTTCAGACCTTAGGAGATGGAAAACCACAG  590

seq1  AGGTGGGGTGAAGCAGTTCAGGGAGAGAATGAGACGATGCAGACGTTCAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGTGAAGCAGTTCAGGGAGAGAATGAGACGATGCAGACGTTCAT  640

seq1  GTGACTCTGGCTTTTGTGTGCCCCCCCCCCCCAGCCCCCAGGAAGATAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTGGCTTTTGTGTGCCCCCCCCCCCCAGCCCCCAGGAAGATAGC  690

seq1  TATTTTCACACACCAACTAATGTGTAGCAATGATTTACAAGTACTTAATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCACACACCAACTAATGTGTAGCAATGATTTACAAGTACTTAATG  740

seq1  GTAGAAATCGGGATGTATTCTCAGTTTGGAGACGCTGCATAGGGAACTCG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATCGGGATGTATTCTCAGTTTGGAGACGCTGCATAGGGAACTCG  790

seq1  CACAAGTATGTTAGCAGAAGTCAATGGCAACTGAGTGTTCCAGTGCACAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTATGTTAGCAGAAGTCAATGGCAACTGAGTGTTCCAGTGCACAA  840

seq1  TGGGAGATGTGTAACAGAGACCCCTAATGAGTAGCCTCGAAACCTTCTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGTGTAACAGAGACCCCTAATGAGTAGCCTCGAAACCTTCTCA  890

seq1  AGCAGAGCTTCATGGGAGGATGTTTCCAGGCAGACAGTGCTCCAAGGTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCTTCATGGGAGGATGTTTCCAGGCAGACAGTGCTCCAAGGTAA  940

seq1  CTTTCAGAATTGGTGAAAATGGAGACCGTACTTTTAACCAATGTGGAAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAATTGGTGAAAATGGAGACCGTACTTTTAACCAATGTGGAAGA  990

seq1  CAAAGGAACATACCTTTTCCTGTTGGGGAAAATGGACTCTCTGAAGTGCG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAACATACCTTTTCCTGTTGGGGAAAATGGACTCTCTGAAGTGCG  1040

seq1  GCTCCCTTGGAAAAGGGATCTTTAAACATCAGCTTCTGCTAACCATGGTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTGGAAAAGGGATCTTTAAACATCAGCTTCTGCTAACCATGGTC  1090

seq1  TAGCTTTATGGATGTGAGGAGGGTTAGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  TAGCTTTATGGATGTGAGGAGGGTTAGAATTC  1122

seq1: chr2_70670589_70671675
seq2: B6Ng01-090N18.g_69_1148

seq1  GAATTCCTATGGGATAATTGCCTCCATCAGATTTGACCTGTGGGCATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGGGATAATTGCCTCCATCAGATTTGACCTGTGGGCATGTC  50

seq1  TACAGGGGTCATTTTCTTAATTACTGATGGATGAGGGAGGGTCCAGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGGTCATTTTCTTAATTACTGATGGATGAGGGAGGGTCCAGCTCA  100

seq1  CTATTGTCAGCCCCATCCACTGACTGGAGGTCCTGGGGTGTGTAAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTCAGCCCCATCCACTGACTGGAGGTCCTGGGGTGTGTAAGGAAG  150

seq1  GCATTTAAGCAACCTAAGAAAACAGCCAATAAGCAGTATTCCTCCATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAGCAACCTAAGAAAACAGCCAATAAGCAGTATTCCTCCATGGG  200

seq1  CTCTGCTTCAGTTCTGGCCATCAGGTGTCTGCCCTGAGCTCCTCCTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCAGTTCTGGCCATCAGGTGTCTGCCCTGAGCTCCTCCTACTC  250

seq1  TGCTATCCCTTGATGGGGGACTCTAACCTCTAAGAGGAACTAAATTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCCCTTGATGGGGGACTCTAACCTCTAAGAGGAACTAAATTCTTC  300

seq1  CCTCCCAGGTTGTTTTTGGTCATAGTGTTCATCACAGCAACAGAAACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGGTTGTTTTTGGTCATAGTGTTCATCACAGCAACAGAAACCAA  350

seq1  ACTAAGACATGTGTATATCCATAAATACATTCAGAAACTCTGACACAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACATGTGTATATCCATAAATACATTCAGAAACTCTGACACAATG  400

seq1  CGGGAATGTCAAATATATTGAGACTCTCTTCCCACCACTAGTACCTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAATGTCAAATATATTGAGACTCTCTTCCCACCACTAGTACCTCATC  450

seq1  CTCTTCTTGATCCATCTCCTTCTCTCAGGAAAGCGGTCCAAATGCCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTGATCCATCTCCTTCTCTCAGGAAAGCGGTCCAAATGCCAGAG  500

seq1  TAAGAGAGAGGTATCTGGGCTGCAAGGGAGACTTTGTTTCTGCATGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGAGGTATCTGGGCTGCAAGGGAGACTTTGTTTCTGCATGTGGT  550

seq1  ATAGGTTAGAAGTGCAAGTTCAGTTTTGAAAAGTCATCTAGTGGTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTAGAAGTGCAAGTTCAGTTTTGAAAAGTCATCTAGTGGTGAATT  600

seq1  TAAAAGGAGACAGAGACAGAGACAGAAACAGAGAGAGACAGAGACAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAGACAGAGACAGAGACAGAAACAGAGAGAGACAGAGACAGAGA  650

seq1  GAGACACACAGAGAGAGACACAGAGAGAGAGAGAGAGACAGAGACAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACACAGAGAGAGACACAGAGAGAGAGAGAGAGACAGAGACAGAAA  700

seq1  GAAAGAAGAGAAGAGAAGAGAAGAGGAGAGGAGAGGAGAGGAGAGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAGAAGAGAAGAGAAGAGGAGAGGAGAGGAGAGGAGAGGAGAG  750

seq1  AAGAGAAGAGAAGAGAAGCTGACACCATGGTTCTAAGTGTTTTTCTATAC  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAGAAGAG-AGCTGACACCATGGTTCTAAGTGTTTTTCTATAC  799

seq1  ACCCAGGAAACATATCTGTTGTTGCAAGTATTCAATAAGAAAATGGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGAAACATATCTGTTGTTGCAAGTATTCAATAAGAAAATGGAAAG  849

seq1  AAGCATTAAAAACAACAAAACTTGTTAGTGGTGAGAGGA-GATGAATGGT  899
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGCATTAAAAACAACAAAACTTGTTAGTGGTGAGAGGAGGATGAATGGT  899

seq1  GCTTTCTTGTGGGCAGGAAAGGAAAAACCAATGTCTTTAAAATAATAAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTGTGGGCAGGAAAGGAAAAACCAATGTCTTTAAAATAATAAGC  949

seq1  ATACAATGAGTTGT-ATGTACAGTGAAATGAAAGGCACCACCATGCCAGA  998
      |||| ||||||||| ||||||   ||||||||||||||||||||||| ||
seq2  ATACCATGAGTTGTAATGTACGTGGAAATGAAAGGCACCACCATGCC-GA  998

seq1  GTCCTCAAGCTGATGTGTATCTACTGAGCTTGTATCTACTTTGGGCACTT  1048
      |||||||||||||   ||||||||||||||||   |||| ||||||||| 
seq2  GTCCTCAAGCTGA--GGTATCTACTGAGCTTGATCCTACCTTGGGCACTG  1046

seq1  GTTAAGTGCAGTTGTTTGCAAATGGCTTATACCCTGTGT  1087
      ||| |||||   ||||||||| || ||  ||||||||||
seq2  GTT-AGTGC--GTGTTTGCAATTGCCT--TACCCTGTGT  1080