BAC Information

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BAC

Clone NameB6Ng01-090P19
Chromosome2 (Build37)
Map Location 35,014,652 - 35,149,780
singlet/doubletdoublet
Overlap geneRab14, Gsn
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371
Downstream geneStom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090P19.bB6Ng01-090P19.g
ACCDH903141DH903142
length1,1381,076
definitionDH903141|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P19, 5' end.DH903142|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,014,652 - 35,015,801)(35,148,702 - 35,149,780)
sequence
gaattcttcacatggttctaaatgagaacaaggaaatcctcatgtctctt
cctatgggcagtccttttactgtaaatgttaggttgctgtggttatgtag
gttatataggtgctatgggactagagaaaacatcttccctgtatttatgt
tatgtaggtgttatggaactagagaaaacatatctcctatatttgtttta
atcagtgaccttggcagtagacacatagaggcagagtgaccacagtggag
acactctcctccaagggactcccctaagtagatgatgaaccctgcccaag
gctttgctaatgaaccagcagaaagcagctgtctgaagagaagcggtgat
atgtctagcattgtggatcctgccgaagagatgacacccagttaatagac
agatttcacatgcagccacatctgactctggagactgtttgtgagtcagt
gcaaactaaaatcttagatatattaaacttcttactctagatgaatcagg
aaaccaagttgattttttgaaagtgttttttgccaaatcttgcataggag
gacttctatgaagtctaaagacttcaaagtaagtcgccatcacaaagtga
gggtcctttcataatgtctcaagtaagaagaatctgtgtggatggaggct
tgccattgtcatttagttggctaggtttgataatcacatttttggaataa
aaaggtatctccattctcttcatcttcagatgacttttttcataaacgct
ccatctttgttgacacaaacatagttttatatagttcctctcatagtgct
tataccatttaagatttatttttggtccagcatattctaacatctgcatg
ctgcaacattgtcattttaaagactaaatagcattctgttttattacact
atttttatttgtcaagattcatcttatctcgttacatttttacacagtat
tatttgcttctggataattttctaagcattagattcagagcaaggatgtt
ttacatttttctggttttatctgtttctagagtgtaccagtaatactgca
taactgtagtgagtactgcagccgaattatttttatgtcgtttctttttc
tagaacaagagagtgctgtggaaaatcactgaatgcca
gaattcatttgacttagaaacaagaggtgtccactagccaagatttcaca
agaccactttgggtaagcagggatttctgagtccccggggatggagattc
aagagctggggactgacacataacaaagtccacgagcatcaccccagatt
ctataatgacaggggcgggcaaaggctggcacctgcctggtgtgcacaag
ccatggcccaacatgggccccagcaatgagaaggagacccaagtatacac
aaggaagacattgtccctcacctggctctgcaatgtcctgttttcctaag
gcactctctcatccccagcatcccggctcagacacccagaaaccctacca
acatttttgcaaaattgaccttctcgatgggcacagtggtgctgatctgc
aaccccgggacttagagggctgagacaggatcaaagctagcctgagctgt
acagtaagatgagatcccgtcaaacagataacactaacaaaacccacaca
cctaacccaagcaaaccaaaacaccaacaaaggttgtttctattttgcag
ggaaggggtggtacggatggactcagcatccccgcttactctccggcatc
agttccccagtcaggacagctgaggagagcagagcctccggccacccagc
ctgaccctgtgtgtagtatgggtgacagtactccggggctcaccttgtag
agcttggccagccttcggttggctgcatcttccttggctgtgtcctcggt
accttcaggcagagctggcttggggcccagcacctaggggaggttgtcaa
tggggtggaagagaatccatgagcatggaggtttctggagtcaggcttca
tagatagccatgtccatgtcccagatgcaacctgcctgggccctgacatc
ttgaatctactccttctgagaacgagctctcatcaagtaccagccgccct
tccctcctgtgccctgccccaaggctggacttccttcagtcgtctgcttt
gattctgagctaaacgcaattggcaaacaccttctagccaggtctgagag
gatcttacactcagacaggctcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35014652_35015801
seq2: B6Ng01-090P19.b_48_1185

seq1  GAATTCTTCACATGGTTCTAAATGAGAACAAGGAAATCCTCATGTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACATGGTTCTAAATGAGAACAAGGAAATCCTCATGTCTCTT  50

seq1  CCTATGGGCAGTCCTTTTACTGTAAATGTTAGGTTGCTGTGGTTATGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGGCAGTCCTTTTACTGTAAATGTTAGGTTGCTGTGGTTATGTAG  100

seq1  GTTATATAGGTGCTATGGGACTAGAGAAAACATCTTCCCTGTATTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAGGTGCTATGGGACTAGAGAAAACATCTTCCCTGTATTTATGT  150

seq1  TATGTAGGTGTTATGGAACTAGAGAAAACATATCTCCTATATTTGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGTGTTATGGAACTAGAGAAAACATATCTCCTATATTTGTTTTA  200

seq1  ATCAGTGACCTTGGCAGTAGACACATAGAGGCAGAGTGACCACAGTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGACCTTGGCAGTAGACACATAGAGGCAGAGTGACCACAGTGGAG  250

seq1  ACACTCTCCTCCAAGGGACTCCCCTAAGTAGATGATGAACCCTGCCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCCTCCAAGGGACTCCCCTAAGTAGATGATGAACCCTGCCCAAG  300

seq1  GCTTTGCTAATGAACCAGCAGAAAGCAGCTGTCTGAAGAGAAGCGGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTAATGAACCAGCAGAAAGCAGCTGTCTGAAGAGAAGCGGTGAT  350

seq1  ATGTCTAGCATTGTGGATCCTGCCGAAGAGATGACACCCAGTTAATAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAGCATTGTGGATCCTGCCGAAGAGATGACACCCAGTTAATAGAC  400

seq1  AGATTTCACATGCAGCCACATCTGACTCTGGAGACTGTTTGTGAGTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCACATGCAGCCACATCTGACTCTGGAGACTGTTTGTGAGTCAGT  450

seq1  GCAAACTAAAATCTTAGATATATTAAACTTCTTACTCTAGATGAATCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTAAAATCTTAGATATATTAAACTTCTTACTCTAGATGAATCAGG  500

seq1  AAACCAAGTTGATTTTTTGAAAGTGTTTTTTGCCAAATCTTGCATAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGTTGATTTTTTGAAAGTGTTTTTTGCCAAATCTTGCATAGGAG  550

seq1  GACTTCTATGAAGTCTAAAGACTTCAAAGTAAGTCGCCATCACAAAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTATGAAGTCTAAAGACTTCAAAGTAAGTCGCCATCACAAAGTGA  600

seq1  GGGTCCTTTCATAATGTCTCAAGTAAGAAGAATCTGTGTGGATGGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTTTCATAATGTCTCAAGTAAGAAGAATCTGTGTGGATGGAGGCT  650

seq1  TGCCATTGTCATTTAGTTGGCTAGGTTTGATAATCACATTTTTGGAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGTCATTTAGTTGGCTAGGTTTGATAATCACATTTTTGGAATAA  700

seq1  AAAGGTATCTCCATTCTCTTCATCTTCAGATGACTTTTTTCATAAACGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATCTCCATTCTCTTCATCTTCAGATGACTTTTTTCATAAACGCT  750

seq1  CCATCTTTGTTGACACAAACATAGTTTTATATAGTTCCTCTCATAGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTGTTGACACAAACATAGTTTTATATAGTTCCTCTCATAGTGCT  800

seq1  TATACCATTTAAGATTTATTTTTGGTCCAGCATATTCTAACATCTGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCATTTAAGATTTATTTTTGGTCCAGCATATTCTAACATCTGCATG  850

seq1  CTGCAACATTGTCATTTTAAAGACTAAATAGCATTCTGTTTTATTACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACATTGTCATTTTAAAGACTAAATAGCATTCTGTTTTATTACACT  900

seq1  ATTTTTATTTGTCAAGATTCATCTTATCTCGTTACATTTTTACACAGTAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTTTTATTTGTCAAGATTCATCTTATCTCGTTACATTTTTACACAGT-A  949

seq1  TTATTTGCTTCTGGATAATTTTCTAAGCATTAGATTCAGAGCAAAGGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||  | ||
seq2  TTATTTGCTTCTGGATAATTTTCTAAGCATTAGATTCAGAGCAA--GGAT  997

seq1  GTTTTTACATTTTTCTGGTTTTAATCTTGTTTTCTAAGAGTTGTACCAGT  1050
      | |||||||||||||||||||| ||||   ||||| |||| |||||||| 
seq2  G-TTTTACATTTTTCTGGTTTT-ATCT--GTTTCT-AGAG-TGTACCAG-  1040

seq1  TAATACTGCCAATAACTGTAGTGAGTACTGCAGCCGAATTATTTTTAATG  1100
      |||||||||  ||||||||||||||||||||||||||||||||||||   
seq2  TAATACTGC--ATAACTGTAGTGAGTACTGCAGCCGAATTATTTTTA--T  1086

seq1  GCCGTTTC-TTTTCTAG-ACAA-AGAGTGCTGTTGAAAAATTCACTG-AT  1146
      | |||||| |||||||| |||| |||||||||| |||||  |||||| ||
seq2  GTCGTTTCTTTTTCTAGAACAAGAGAGTGCTGTGGAAAA--TCACTGAAT  1134

seq1  GCCA  1150
      ||||
seq2  GCCA  1138

seq1: chr2_35148702_35149780
seq2: B6Ng01-090P19.g_67_1142 (reverse)

seq1  CAGTGAGCCTGTCTGAGTGGTAAGATCCTCTCCAGACCTGGCTAGAAGGT  50
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  CAGTGAGCCTGTCTGAGT-GTAAGATCCTCT-CAGACCTGGCTAGAAGGT  48

seq1  GTTTGCCAATTGCGTTTAGCTCAGAATCAAAGCAGACGACTGAAGGAAAG  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTGCCAATTGCGTTTAGCTCAGAATCAAAGCAGACGACTGAAGG-AAG  97

seq1  TCCAGCCTGGGGGCAGGGCACAGGGAGGGAAGGGCGGCTGGTACTTGATG  150
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  TCCAGCCTTGGGGCAGGGCACA-GGAGGGAAGGGCGGCTGGTACTTGATG  146

seq1  AGAGCTCGTTCTCAGAAGGAGTAGATTCAAGATGTCAGGG-CCAGGCAGG  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAGCTCGTTCTCAGAAGGAGTAGATTCAAGATGTCAGGGCCCAGGCAGG  196

seq1  TTGCATCTGGGACATGGACATGGCTATCTATGAAGCCTGACTCCAGAAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTGGGACATGGACATGGCTATCTATGAAGCCTGACTCCAGAAAC  246

seq1  CTCCATGCTCATGGATTCTCTTCCACCCCATTGACAACCTCCCCTAGGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGCTCATGGATTCTCTTCCACCCCATTGACAACCTCCCCTAGGTG  296

seq1  CTGGGCCCCAAGCCAGCTCTGCCTGAAGGTACCGAGGACACAGCCAAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCCCAAGCCAGCTCTGCCTGAAGGTACCGAGGACACAGCCAAGGA  346

seq1  AGATGCAGCCAACCGAAGGCTGGCCAAGCTCTACAAGGTGAGCCCCGGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGCCAACCGAAGGCTGGCCAAGCTCTACAAGGTGAGCCCCGGAG  396

seq1  TACTGTCACCCATACTACACACAGGGTCAGGCTGGGTGGCCGGAGGCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCACCCATACTACACACAGGGTCAGGCTGGGTGGCCGGAGGCTCT  446

seq1  GCTCTCCTCAGCTGTCCTGACTGGGGAACTGATGCCGGAGAGTAAGCGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTCAGCTGTCCTGACTGGGGAACTGATGCCGGAGAGTAAGCGGG  496

seq1  GATGCTGAGTCCATCCGTACCACCCCTTCCCTGCAAAATAGAAACAACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGAGTCCATCCGTACCACCCCTTCCCTGCAAAATAGAAACAACCT  546

seq1  TTGTTGGTGTTTTGGTTTGCTTGGGTTAGGTGTGTGGGTTTTGTTAGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTGTTTTGGTTTGCTTGGGTTAGGTGTGTGGGTTTTGTTAGTGT  596

seq1  TATCTGTTTGACGGGATCTCATCTTACTGTACAGCTCAGGCTAGCTTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTGACGGGATCTCATCTTACTGTACAGCTCAGGCTAGCTTTGA  646

seq1  TCCTGTCTCAGCCCTCTAAGTCCCGGGGTTGCAGATCAGCACCACTGTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCAGCCCTCTAAGTCCCGGGGTTGCAGATCAGCACCACTGTGC  696

seq1  CCATCGAGAAGGTCAATTTTGCAAAAATGTTGGTAGGGTTTCTGGGTGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGAGAAGGTCAATTTTGCAAAAATGTTGGTAGGGTTTCTGGGTGTC  746

seq1  TGAGCCGGGATGCTGGGGATGAGAGAGTGCCTTAGGAAAACAGGACATTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCGGGATGCTGGGGATGAGAGAGTGCCTTAGGAAAACAGGACATTG  796

seq1  CAGAGCCAGGTGAGGGACAATGTCTTCCTTGTGTATACTTGGGTCTCCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGGTGAGGGACAATGTCTTCCTTGTGTATACTTGGGTCTCCTT  846

seq1  CTCATTGCTGGGGCCCATGTTGGGCCATGGCTTGTGCACACCAGGCAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGCTGGGGCCCATGTTGGGCCATGGCTTGTGCACACCAGGCAGGT  896

seq1  GCCAGCCTTTGCCCGCCCCTGTCATTATAGAATCTGGGGTGATGCTCGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTTTGCCCGCCCCTGTCATTATAGAATCTGGGGTGATGCTCGTG  946

seq1  GACTTTGTTATGTGTCAGTCCCCAGCTCTTGAATCTCCATCCCCGGGGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTTATGTGTCAGTCCCCAGCTCTTGAATCTCCATCCCCGGGGAC  996

seq1  TCAGAAATCCCTGCTTACCCAAAGTGGTCTTGTGAAATCTTGGCTAGTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCCTGCTTACCCAAAGTGGTCTTGTGAAATCTTGGCTAGTGG  1046

seq1  ACACCTCTTGTTTCTAAGTCAAATGAATTC  1079
      ||||||||||||||||||||||||||||||
seq2  ACACCTCTTGTTTCTAAGTCAAATGAATTC  1076