BAC Information

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BAC

Clone NameB6Ng01-091M14
Chromosome2 (Build37)5 (Build37)
Map Location 142,776,686 - 142,777,69880,319,486 - 80,320,004
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091M14.bB6Ng01-091M14.g
ACCDH903720DH903721
length989979
definitionDH903720|Mus musculus domesticus DNA, BAC clone: B6Ng01-091M14, 5' end.DH903721|Mus musculus domesticus DNA, BAC clone: B6Ng01-091M14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,686 - 142,777,698)(80,319,486 - 80,320,004)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattttcgatcttacagagcaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttaagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttataatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttttatcatac
agatcttttacttccttagttagagtcacgcctagatattttatatattt
gtgactattgagaaggtgtgtttccctaatttctttctc
gaattcctgttacattattttaacacttctgtataaaaggaatttagtta
ttagtataaatttaaacagattatttccttacactattcttgggcatata
ctcaaaggaatttatgttttaataaagagatacttgttcatccatgttct
ttcatgctctattaataatggatagaaattggaaatgatccagatgtcaa
tcatctgatacatggatagtgaaaatgggatacatggacacagtacaaca
caatatataaaaacaaggaacttaagtggagtaaccgtataactggggag
acaatgctacatctacacttcttatgctacaaggaaaatcccagtactaa
ggataggtcacaccttgttgaatcactgcccaaaagagtcccacagcact
ttctaatataacatgcctttgtcaaggttattggttcccctcaatagttt
gatagtaaggtacttttgtacaaaaaaaataattactactaatatcaaac
atgaagaaatcaaactaatatccaactagaagcttcattccttctgatca
cgttctatggtgctccctcagaggagatcacacaaactccttagcatgta
tctactagtacatgaaaacatataaaaactaaatacagactgaaaaagtt
gtactcattacacacacacatacacacacacatacacacacacacataca
cacacacacacacacacacacacacatgaatgatagatggaagttaacta
gagtcaaatgcatataggtgtcataaatttgaaaagaatcaagaaagggt
aggagggagagattttagggagtaaagggaagtggtaaataatataaata
taatctcaaaataaaagaaatattttaaaaattaaacctcaataaaacat
aaaatataaatataaagtatacctttattttatttccagatcactttata
aatatctaatataaaatgactttatttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776686_142777698
seq2: B6Ng01-091M14.b_47_599 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGAC  100

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAA  300

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  350
      ||||||||||||||||||  |||||||||||| |||||||||||||||||
seq2  CAGAACAGCAATGGCTTGCTCTGTAAGATCGAAAATTGACAAATGGGACC  350

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  550
      ||||||||||||||||||||||||||||||||||| ||            
seq2  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CT  540

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  600
      ||| |||||    |||                                  
seq2  GAACAAAGA----ATTC---------------------------------  553

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  650
                                                        
seq2  --------------------------------------------------  553

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  700
                                                        
seq2  --------------------------------------------------  553

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  750
                                                        
seq2  --------------------------------------------------  553

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  800
                                                        
seq2  --------------------------------------------------  553

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  850
                                                        
seq2  --------------------------------------------------  553

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  900
                                                        
seq2  --------------------------------------------------  553

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  950
                                                        
seq2  --------------------------------------------------  553

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1000
                                                        
seq2  --------------------------------------------------  553

seq1  GAACAAAGAATTC  1013
                   
seq2  -------------  553

seq1: chr5_80319486_80320004
seq2: B6Ng01-091M14.g_68_586 (reverse)

seq1  ATTAGTTTGATTTCTTCATGTTTGATATTAGTAGTAATTATTTTTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTGATTTCTTCATGTTTGATATTAGTAGTAATTATTTTTTTTGT  50

seq1  ACAAAAGTACCTTACTATCAAACTATTGAGGGGAACCAATAACCTTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTACCTTACTATCAAACTATTGAGGGGAACCAATAACCTTGACA  100

seq1  AAGGCATGTTATATTAGAAAGTGCTGTGGGACTCTTTTGGGCAGTGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGTTATATTAGAAAGTGCTGTGGGACTCTTTTGGGCAGTGATTC  150

seq1  AACAAGGTGTGACCTATCCTTAGTACTGGGATTTTCCTTGTAGCATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTGTGACCTATCCTTAGTACTGGGATTTTCCTTGTAGCATAAGA  200

seq1  AGTGTAGATGTAGCATTGTCTCCCCAGTTATACGGTTACTCCACTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGATGTAGCATTGTCTCCCCAGTTATACGGTTACTCCACTTAAGT  250

seq1  TCCTTGTTTTTATATATTGTGTTGTACTGTGTCCATGTATCCCATTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTTTTATATATTGTGTTGTACTGTGTCCATGTATCCCATTTTCA  300

seq1  CTATCCATGTATCAGATGATTGACATCTGGATCATTTCCAATTTCTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCATGTATCAGATGATTGACATCTGGATCATTTCCAATTTCTATCC  350

seq1  ATTATTAATAGAGCATGAAAGAACATGGATGAACAAGTATCTCTTTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAATAGAGCATGAAAGAACATGGATGAACAAGTATCTCTTTATTA  400

seq1  AAACATAAATTCCTTTGAGTATATGCCCAAGAATAGTGTAAGGAAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAATTCCTTTGAGTATATGCCCAAGAATAGTGTAAGGAAATAAT  450

seq1  CTGTTTAAATTTATACTAATAACTAAATTCCTTTTATACAGAAGTGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAATTTATACTAATAACTAAATTCCTTTTATACAGAAGTGTTAA  500

seq1  AATAATGTAACAGGAATTC  519
      |||||||||||||||||||
seq2  AATAATGTAACAGGAATTC  519