BAC Information

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BAC

Clone NameB6Ng01-091N17
Chromosome2 (Build37)
Map Location 38,878,339 - 39,019,240
singlet/doubletdoublet
Overlap geneGolga1, A930041I02Rik, LOC100042584
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l
Downstream genePpp6c, Vmn2r-ps2, Ppia-ps2_560.1, LOC100042604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091N17.bB6Ng01-091N17.g
ACCDH903774DH903775
length1,149533
definitionDH903774|Mus musculus domesticus DNA, BAC clone: B6Ng01-091N17, 5' end.DH903775|Mus musculus domesticus DNA, BAC clone: B6Ng01-091N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,878,339 - 38,879,494)(39,018,706 - 39,019,240)
sequence
gaattctgcatggcttttgaaatgacctacaggataggggcaataggaca
aaaggcagagggtgagctgcaggtctgtggggaaggagtgccagccccat
atgagaagattccatccagtacctgccaggcaaactactgacttttggtg
accaactggcatatacacacaccacataggtgctgcacacagatggtcct
ataggtctcaagccccctaggcagctgagcacctttaccacaaaagcagg
gccctaacagtgcagagcaccccccccactcccaccccaaatcctccctc
cagtatagggagagctctcacaagtggctcctggccctgcagtggcaggc
agtcctctcctgttgtggctggcattgcctcctgagccttgcaagtcttc
aaggcctctagttccctctgcagtttgtgcatctgcagcagggcagaact
gtgacctagggcagtgggagtatagtgtgagctagtgactgcacactgct
ttgtgacaggctggctcactaatgacgcttactggccaggggttgactcc
tcacctttttccagctgtcgaagttcctgctccttctggagaagtgcctc
atccttttcacacaggctctgatttttctcttctatgatggctgtcaact
cagtggccttagcaggaaactcagcataagaggggctgacataactccct
ttcctatagtacccttcattacatctgcagcttagaataaacatatggca
gtgggatccattctcctaaatggccttgcacaatgtgcttgccctcacta
ccctgctggcccatgctgggctacccagagtgtggatattctggttagcc
tcacaacacatcctttcctgagcacccacaattcaccagcctgttgcgta
cctcatgctggtatcagaaggtatgatcactctaagttttttccagaagc
gactgggcctcagattggtcaagaactcactggagacctctagtcagcag
agcaagagccaggtgctctatttgttcccacatatagtttttctatactt
ctggcttaccctttgggaatagcagggggtgatgtacactgacagaatcc
gaacttgtagttcttaatgactttttctcatcatgtttacactagtaac
tggggcttgaatccagatcctcaggtttgggtatcaagtgccttaaccag
ttgagccatgtctctggccctttttcagttttgaattctcatttacttct
tttgcagtgggttattattagtggggagagatgttgggattaaaaaataa
agctaatgaattaaagctatgggtcttaaatattttcaaagggttttatt
tatttactgtgtgtgtgagtacattcgtgtgtttgtgggagataggggtg
agtgtgcacatacatatgggtacagatgcccaagaaagcccaaagagggg
gtcacatttcctgggactggaattatacccagcttgagctaccttggaag
tgctggtgcaggtaggtcctctggaaatgtagcctttgctcttaaccact
gagccatctctttagcccccaaaacagatctcttaaataacttggcaggt
tgcagatttagttcagtgggccctttagctccaggcttgggagtttgaag
aaagtgggtaaatatatcaaagtctggtcatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38878339_38879494
seq2: B6Ng01-091N17.b_47_1195

seq1  GAATTCTGCATGGCTTTTGAAATGACCTACAGGATAGGGGCAATAGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATGGCTTTTGAAATGACCTACAGGATAGGGGCAATAGGACA  50

seq1  AAAGGCAGAGGGTGAGCTGCAGGTCTGTGGGGAAGGAGTGCCAGCCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGAGGGTGAGCTGCAGGTCTGTGGGGAAGGAGTGCCAGCCCCAT  100

seq1  ATGAGAAGATTCCATCCAGTACCTGCCAGGCAAACTACTGACTTTTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGATTCCATCCAGTACCTGCCAGGCAAACTACTGACTTTTGGTG  150

seq1  ACCAACTGGCATATACACACACCACATAGGTGCTGCACACAGATGGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTGGCATATACACACACCACATAGGTGCTGCACACAGATGGTCCT  200

seq1  ATAGGTCTCAAGCCCCCTAGGCAGCTGAGCACCTTTACCACAAAAGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCTCAAGCCCCCTAGGCAGCTGAGCACCTTTACCACAAAAGCAGG  250

seq1  GCCCTAACAGTGCAGAGCACCCCCCCCACTCCCACCCCAAATCCTCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAACAGTGCAGAGCACCCCCCCCACTCCCACCCCAAATCCTCCCTC  300

seq1  CAGTATAGGGAGAGCTCTCACAAGTGGCTCCTGGCCCTGCAGTGGCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAGGGAGAGCTCTCACAAGTGGCTCCTGGCCCTGCAGTGGCAGGC  350

seq1  AGTCCTCTCCTGTTGTGGCTGGCATTGCCTCCTGAGCCTTGCAAGTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTCCTGTTGTGGCTGGCATTGCCTCCTGAGCCTTGCAAGTCTTC  400

seq1  AAGGCCTCTAGTTCCCTCTGCAGTTTGTGCATCTGCAGCAGGGCAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTCTAGTTCCCTCTGCAGTTTGTGCATCTGCAGCAGGGCAGAACT  450

seq1  GTGACCTAGGGCAGTGGGAGTATAGTGTGAGCTAGTGACTGCACACTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTAGGGCAGTGGGAGTATAGTGTGAGCTAGTGACTGCACACTGCT  500

seq1  TTGTGACAGGCTGGCTCACTAATGACGCTTACTGGCCAGGGGTTGACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACAGGCTGGCTCACTAATGACGCTTACTGGCCAGGGGTTGACTCC  550

seq1  TCACCTTTTTCCAGCTGTCGAAGTTCCTGCTCCTTCTGGAGAAGTGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTTTCCAGCTGTCGAAGTTCCTGCTCCTTCTGGAGAAGTGCCTC  600

seq1  ATCCTTTTCACACAGGCTCTGATTTTTCTCTTCTATGATGGCTGTCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTCACACAGGCTCTGATTTTTCTCTTCTATGATGGCTGTCAACT  650

seq1  CAGTGGCCTTAGCAGGAAACTCAGCATAAGAGGGGCTGACATAACTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCCTTAGCAGGAAACTCAGCATAAGAGGGGCTGACATAACTCCCT  700

seq1  TTCCTATAGTACCCTTCATTACATCTGCAGCTTAGAATAAACATATGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATAGTACCCTTCATTACATCTGCAGCTTAGAATAAACATATGGCA  750

seq1  GTGGGATCCATTCTCCTAAATGGCCTTGCACAATGTGCTTGCCCTCACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATCCATTCTCCTAAATGGCCTTGCACAATGTGCTTGCCCTCACTA  800

seq1  CCCTGCTGGCCCATGCTGGGCTACCCAGAGTGTGGATATTCTGGTTAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGGCCCATGCTGGGCTACCCAGAGTGTGGATATTCTGGTTAGCC  850

seq1  TCACAACACATCCTTTCCTGAGCACCCACAATTCACCAGCCTGTTGCGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACACATCCTTTCCTGAGCACCCACAATTCACCAGCCTGTTGCGTA  900

seq1  CCTCATGCTGGTATCAGAAGGTATGATCACTCTAAGTTTTTTCCAGAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCTGGTATCAGAAGGTATGATCACTCTAAGTTTTTTCCAGAAGC  950

seq1  GACT-GGCCTCAGATTGGTCAAGAACTCACTGGAGACCTCTAGTCAGCAG  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGCCTCAGATTGGTCAAGAACTCACTGGAGACCTCTAGTCAGCAG  1000

seq1  AGCAAGAGCCAGGTGCTCTATTTGTCCCCACATATAGTTTTTCCTATACT  1049
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  AGCAAGAGCCAGGTGCTCTATTTGTTCCCACATATAGTTTTT-CTATACT  1049

seq1  TCTGGCTTACCCTTTGGGAATAGCAGGTGGTGATGTACCACTTGACAGAA  1099
      ||||||||||||||||||||||||||| ||||||||| ||| ||||||||
seq2  TCTGGCTTACCCTTTGGGAATAGCAGGGGGTGATGTA-CAC-TGACAGAA  1097

seq1  TCAG-ACTGTTAGTTCCCTAATGACTTTTTCTCCAATCAATGTTTACAAC  1148
      || | |||  ||||| | |||||||||||||||  ||| |||||||| ||
seq2  TCCGAACTTGTAGTT-CTTAATGACTTTTTCTC--ATC-ATGTTTAC-AC  1142

seq1  TAAGTAAC  1156
      | ||||||
seq2  T-AGTAAC  1149

seq1: chr2_39018706_39019240
seq2: B6Ng01-091N17.g_68_605 (reverse)

seq1  TATGACCAGACTTTGAT-TATTTACCCACTTTCTTC-AACT-CCAAGCCT  47
      ||||||||||||||||| |||||||||||||||||| |||| ||||||||
seq2  TATGACCAGACTTTGATATATTTACCCACTTTCTTCAAACTCCCAAGCCT  50

seq1  GGAGCTAAAGGGCCCACTGAACTAAATCTGCAACCTGCCAAGTTATTTAA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAAAGGGCCCACTGAACTAAATCTGCAACCTGCCAAGTTATTTAA  100

seq1  GAGATCTGTTTTGGGGGCTAAAGAGATGGCTCAGTGGTTAAGAGCAATGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGATCTGTTTTGGGGGCTAAAGAGATGGCTCAGTGGTTAAGAGCAAAGG  150

seq1  CTACATTTCCAGAGGACCTACCTGCACCAGCACTTCCAAGGTAGCTCAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTCCAGAGGACCTACCTGCACCAGCACTTCCAAGGTAGCTCAAG  200

seq1  CTGGGTATAATTCCAGTCCCAGGAAATGTGACCCCCTCTTTGGGCTTTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTATAATTCCAGTCCCAGGAAATGTGACCCCCTCTTTGGGCTTTCT  250

seq1  TGGGCATCTGTACCCATATGTATGTGCACACTCACCCCTATCTCCCACAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCTGTACCCATATGTATGTGCACACTCACCCCTATCTCCCACAA  300

seq1  ACACACGAATGTACTCACACACACAGTAAATAAATAAAACCCTTTGAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGAATGTACTCACACACACAGTAAATAAATAAAACCCTTTGAAAA  350

seq1  TATTTAAGACCCATAGCTTTAATTCATTAGCTTTATTTTTTAATCCCAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGACCCATAGCTTTAATTCATTAGCTTTATTTTTTAATCCCAAC  400

seq1  ATCTCTCCCCACTAATAATAACCCACTGCAAAAGAAGTAAATGAGAATTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCCCACTAATAATAACCCACTGCAAAAGAAGTAAATGAGAATTC  450

seq1  AAAACTGAAAAAGGGCCAGAGACATGGCTCAACTGGTTAAGGCACTTGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAAAAAGGGCCAGAGACATGGCTCAACTGGTTAAGGCACTTGAT  500

seq1  ACCCAAACCTGAGGATCTGGATTCAAGCCCCAGAATTC  535
      ||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACCTGAGGATCTGGATTCAAGCCCCAGAATTC  538