BAC Information

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BAC

Clone NameB6Ng01-092A23
Chromosome2 (Build37)
Map Location 147,822,182 - 147,959,360
singlet/doubletdoublet
Overlap geneLOC100043820, Foxa2, LOC383752
Upstream geneXrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
Downstream geneSstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092A23.bB6Ng01-092A23.g
ACCDH903923DH903924
length2641,158
definitionDH903923|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A23, 5' end.DH903924|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,822,182 - 147,822,446)(147,958,208 - 147,959,360)
sequence
gaattcctttccagggtgagacccagccttccagaaccttcacatttgca
caggtgtgttctctccaggaaagcaccgagcttgtgctgaaactctgaaa
cccagtcatggtgcagctttgtcccgctccttagattgagatgagtttct
cttttagaaaagtgattgagattggctaaaacactgaactcccttttgta
gcttgtcttgtgtgtgtatatcaagctggtttgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgt
gaattctttttgtcgggaatttagtcacaatgacaagaaaagttactaat
acactgataaaggctcgaaactataatccatagaaaggggaaaagaaaag
aaatgtatatttttaagaagtacaagtagaactttattttttattctcct
tcttatgacaagttattcagtgattggtttatgtatcagtaaaatacatg
gcaaagatgtcataggaagacactgggaatagctgattataaatattcac
atcactgtagtatgatttgaaaatgagtcagttgtgacggtgtatttgta
aacgtagggcaaccactagaataaacattttaaacgaaatatggttgtca
ttctaagaccagggataaattgaatacacaatactcaattaaaactataa
aagtcattgaacagaaaatgaaactggcatgatacatagtaattcaaaca
cacactaaactaattttattgtccttagagaaagagtagactttatactc
ttctaaaggcaaggtaaaacacaaagtaacttctacttgggtttccagaa
tgccaagaatcctacaagactctgtaaatctcctttagagccaggagtgg
tggtgcaggcctgtaatcacctcatcaggaaggtaatgagtttcagacta
atctggactatatagaaaaaaagattcgaaaggatgttttaaaaggaact
tctttaagaaacaagcttacccggtaaggtccttgtgcttggaggtccaa
aaccagaaaggcaacctactatccgagctctggatctttggttcagagtt
ggttgaattctagagatgaaagatttgtctgacccctgacctagttgcat
gggagacttcctctgcatcacagtgcagtcctgggttattgtatatcctg
ctttccctagcctttccatactagttcatctctctctctttcttgctaac
agcaaatcttagatatctgatacacaaatgaaagcagaagattttgggta
tacatttgtatacagaaactctttttaaacatatgaagacatagatagga
ttaaaagtcaattatattggagaaagaattatgttggatggccatgctcc
ggaacaggcaaattatcaggatatcattattaccaaatccaatatcattc
tatgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_147822182_147822446
seq2: B6Ng01-092A23.b_30_294

seq1  GGAATTCCTTTCCAGGGTGAGACCCAGCCTTCCAGAACCTTCACATTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCTTTCCAGGGTGAGACCCAGCCTTCCAGAACCTTCACATTTGC  50

seq1  ACAGGTGTGTTCTCTCCAGGAAAGCACCGAGCTTGTGCTGAAACTCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTGTTCTCTCCAGGAAAGCACCGAGCTTGTGCTGAAACTCTGAA  100

seq1  ACCCAGTCATGGTGCAGCTTTGTCCCGCTCCTTAGATTGAGATGAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTCATGGTGCAGCTTTGTCCCGCTCCTTAGATTGAGATGAGTTTC  150

seq1  TCTTTTAGAAAAGTGATTGAGATTGGCTAAAACACTGAACTCCCTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGAAAAGTGATTGAGATTGGCTAAAACACTGAACTCCCTTTTGT  200

seq1  AGCTTGTCTTGTGTGTGTATATCAAGCTGGTTTGTGTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTCTTGTGTGTGTATATCAAGCTGGTTTGTGTGTGTGTGTGTGTG  250

seq1  TGTGTGTGTGTGTGT  265
      |||||||||||||||
seq2  TGTGTGTGTGTGTGT  265

seq1: chr2_147958208_147959360
seq2: B6Ng01-092A23.g_67_1224 (reverse)

seq1  TCATCATAGAATGATATATTGTATT--GATATAATGTATTCCTGATAATT  48
      |||||||||||||  |||||| |||  |  ||||||   |||||||||||
seq2  TCATCATAGAATG--ATATTGGATTTGGTAATAATGATATCCTGATAATT  48

seq1  TCCTTGTTCTGGAGCATGG-CAT-CAACATAA-TCTTTCTCC-ATATATT  94
      | | ||||| ||||||||| ||| |||||||| ||||||||| ||||| |
seq2  TGCCTGTTCCGGAGCATGGCCATCCAACATAATTCTTTCTCCAATATAAT  98

seq1  TG-CTTTTAAT-CTATCTATGTCTTCATATGTTTTAAAAGAGTTTCTTGT  142
      || |||||||| |||||||||||||||||||||| ||||||||||| |||
seq2  TGACTTTTAATCCTATCTATGTCTTCATATGTTTAAAAAGAGTTTC-TGT  147

seq1  ATAC-AATGTATACC--AAATCTTCTTGCTTTTCATTTGTGTATTCAGAT  189
      |||| ||||||||||  |||||||| ||| ||||||||||||| ||||| 
seq2  ATACAAATGTATACCCAAAATCTTC-TGC-TTTCATTTGTGTA-TCAGA-  193

seq1  TATCTAAGATTTGCTGTTAGCAAGAAAGAGAGAGAGATGAACTAGTATGG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGATTTGCTGTTAGCAAGAAAGAGAGAGAGATGAACTAGTATGG  243

seq1  AAAGGCTAGGGAAAGCAGGATATACAATAAACCAGGACTGCACTGTGATG  289
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGGCTAGGGAAAGCAGGATATACAATAACCCAGGACTGCACTGTGATG  293

seq1  CAGAGGAAGTCTCCCATGCAACTAGGTCAGGGGTCAGACAAATCTTTCAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAGTCTCCCATGCAACTAGGTCAGGGGTCAGACAAATCTTTCAT  343

seq1  CTCTAGAATTCAACCAACTCTGAACCAAAGATCCAGAGCTCGGATAGTAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAATTCAACCAACTCTGAACCAAAGATCCAGAGCTCGGATAGTAG  393

seq1  GTTGCC-TTCTGGTTTTGGACCTCCAAGCACAAGGACCTTACCGGGTAAG  438
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTTCTGGTTTTGGACCTCCAAGCACAAGGACCTTACCGGGTAAG  443

seq1  CTTGTTTCTTAAAGAAGTTCCTTTTAAAACATCCTTTCGAATCTTTTTTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCTTAAAGAAGTTCCTTTTAAAACATCCTTTCGAATCTTTTTTT  493

seq1  CTATATAGTCCAGATTAGTCTGAAACTCATTACCTTCCTGATGAGGTGAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGTCCAGATTAGTCTGAAACTCATTACCTTCCTGATGAGGTGAT  543

seq1  TACAGGCCTGCACCACCACTCCTGGCTCTAAAGGAGATTTACAGAGTCTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCCTGCACCACCACTCCTGGCTCTAAAGGAGATTTACAGAGTCTT  593

seq1  GTAGGATTCTTGGCATTCTGGAAACCCAAGTAGAAGTTACTTTGTGTTTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATTCTTGGCATTCTGGAAACCCAAGTAGAAGTTACTTTGTGTTTT  643

seq1  ACCTTGCCTTTAGAAGAGTATAAAGTCTACTCTTTCTCTAAGGACAATAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCTTTAGAAGAGTATAAAGTCTACTCTTTCTCTAAGGACAATAA  693

seq1  AATTAGTTTAGTGTGTGTTTGAATTACTATGTATCATGCCAGTTTCATTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTAGTGTGTGTTTGAATTACTATGTATCATGCCAGTTTCATTT  743

seq1  TCTGTTCAATGACTTTTATAGTTTTAATTGAGTATTGTGTATTCAATTTA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCAATGACTTTTATAGTTTTAATTGAGTATTGTGTATTCAATTTA  793

seq1  TCCCTGGTCTTAGAATGACAACCATATTTCGTTTAAAATGTTTATTCTAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTCTTAGAATGACAACCATATTTCGTTTAAAATGTTTATTCTAG  843

seq1  TGGTTGCCCTACGTTTACAAATACACCGTCACAACTGACTCATTTTCAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCCCTACGTTTACAAATACACCGTCACAACTGACTCATTTTCAAA  893

seq1  TCATACTACAGTGATGTGAATATTTATAATCAGCTATTCCCAGTGTCTTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTACAGTGATGTGAATATTTATAATCAGCTATTCCCAGTGTCTTC  943

seq1  CTATGACATCTTTGCCATGTATTTTACTGATACATAAACCAATCACTGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACATCTTTGCCATGTATTTTACTGATACATAAACCAATCACTGAA  993

seq1  TAACTTGTCATAAGAAGGAGAATAAAAAATAAAGTTCTACTTGTACTTCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTCATAAGAAGGAGAATAAAAAATAAAGTTCTACTTGTACTTCT  1043

seq1  TAAAAATATACATTTCTTTTCTTTTCCCCTTTCTATGGATTATAGTTTCG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATACATTTCTTTTCTTTTCCCCTTTCTATGGATTATAGTTTCG  1093

seq1  AGCCTTTATCAGTGTATTAGTAACTTTTCTTGTCATTGTGACTAAATTCC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTATCAGTGTATTAGTAACTTTTCTTGTCATTGTGACTAAATTCC  1143

seq1  CGACAAAAAGAATTC  1153
      |||||||||||||||
seq2  CGACAAAAAGAATTC  1158