BAC Information

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BAC

Clone NameB6Ng01-092M17
Chromosome2 (Build37)
Map Location 154,647,487 - 154,797,229
singlet/doubletdoublet
Overlap geneRaly, Eif2s2
Upstream geneLOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692
Downstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092M17.bB6Ng01-092M17.g
ACCDH904455DH904456
length9931,140
definitionDH904455|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M17, 5' end.DH904456|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,647,487 - 154,648,481)(154,796,062 - 154,797,229)
sequence
gaattctgctgcttatttgtttgtttataaatttaagaagacagccctcc
tcagaaattaaagttatttgaggagcccagtatactgtatggagaggaat
tggggtctgttgtgagctgtagaatttataataggggatcaaaaagtaca
agataggaacaactcatgcaggaagtgacccatctatgactggaagaaga
aaattcctagaactgaagagatgttagaagttggactgacaggagttagg
gacctagacagctgggttgacatcgctagacctgagtttttaatattatc
tcttaacttgtgtccagttagtaaactgttgtatcttcctgtcctcccag
gccactatgtttttgttgtttttgtttttgtttggtgctgaggactgaac
ccaaggctttgtgcttatttagcaagcactctgctaccaagttaaatccc
caaacccctgccatctgtcttttgtgtgtacaaccattcagtgataatgt
agagaatcaaatggaaaaatctaagtcagaaagttttgtgaagcagtaag
tagcaggaatgagacaaaatgagacctgcttgccactctattccccaaag
tcttttccttagggaatttccgctgtaaatcttcatccatccatccatcc
atccatccatctatctgtctgtctgtctgtctgtctgtctgtctgtctat
ctactatatgtaagtacactgcagctgttttcagacacaccagaaaaggg
catcagatcccattacagatggttgtgagccaccatgtggctgctgggat
ttgaactcaggacttccagaagagcagtcagtgctcttaactgctgagcc
aactctccagctttcctcctatctttctgtcccccttcttctgtgggacc
tacccagaccatattttatcatagggaaaatggattctagggctcagatg
acagactgcaacactacagctatagttgcatcctgtggttctc
gaattcccaagtcatattctcaaggtcccggtttgcacagggccagccct
ttcttgcatctgaggtgagacaaggtgtgagctagaggtggtgacagaat
gatcagaggcgcttcgtctgtgaggaaagcgaagacagagaatggtttcc
cttacatcttcctttccacccatgctttgattggcttgacagatgtgtat
ggacatgtgcctgttactgtgccttgcaatgaatctgaggagaggcagat
gaagcagtcagtctgcctttcagaacctggtacattaatggagggaaagc
tcgtgctgcctggggtgagagctgtggaggctgagacttagaggatagag
tgagaagcagccaagagcagcgtaggagccatgacacagtcagagttcta
gaaggcaccatgacacatcagtgttctagaaggcaccatgacacagtcag
tgttctagatggcaccatgacacatcagtgttctagaaggcgctatgaca
catcagtgttctagaaggcaccatgacacatcagtgttctagaaggcacc
atgacacatcagtgttctagaaggcaccatgacacatcagtgttctagaa
ggcaccatgacacatcagtgttctagaaggcacgttgaaaggtggagaga
ggctgggtactgtcagcagctcacagaccttagaaagacacttagattca
ccactttgtcataaaggatataacagtggacatagattaaggaatatata
catacaattggagagatggctcagcagtcaagagcactgactgctcttcc
agaggtcctgagttcatttctaagcaaccacttggtggctcacaacaatc
tgtaatgggatctgatgccctcttctggtgtgcctgaagacagctacagt
gtactcatatatataaaacaaaataattttctaaaaaagaaagaaagtat
gtacagccaggactacacgaaagaaactcttgtctcgatcaaacctaacc
aaccaaacaatccaacgaatcaacaaccgatcatacaacggacagggacc
aagaattttgcattaagaatcagcaagtccgagcttcgtgtcggttctag
gcgtgcctctccatgtgttctgcgtctctccttaaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154647487_154648481
seq2: B6Ng01-092M17.b_44_1036

seq1  GAATTCTGCTGCTTATTTGTTTGTTTATAAATTTAAGAAGACAGCCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGCTTATTTGTTTGTTTATAAATTTAAGAAGACAGCCCTCC  50

seq1  TCAGAAATTAAAGTTATTTGAGGAGCCCAGTATACTGTATGGAGAGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATTAAAGTTATTTGAGGAGCCCAGTATACTGTATGGAGAGGAAT  100

seq1  TGGGGTCTGTTGTGAGCTGTAGAATTTATAATAGGGGATCAAAAAGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTGTTGTGAGCTGTAGAATTTATAATAGGGGATCAAAAAGTACA  150

seq1  AGATAGGAACAACTCATGCAGGAAGTGACCCATCTATGACTGGAAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAACAACTCATGCAGGAAGTGACCCATCTATGACTGGAAGAAGA  200

seq1  AAATTCCTAGAACTGAAGAGATGTTAGAAGTTGGACTGACAGGAGTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTAGAACTGAAGAGATGTTAGAAGTTGGACTGACAGGAGTTAGG  250

seq1  GACCTAGACAGCTGGGTTGACATCGCTAGACCTGAGTTTTTAATATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGACAGCTGGGTTGACATCGCTAGACCTGAGTTTTTAATATTATC  300

seq1  TCTTAACTTGTGTCCAGTTAGTAAACTGTTGTATCTTCCTGTCCTCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTTGTGTCCAGTTAGTAAACTGTTGTATCTTCCTGTCCTCCCAG  350

seq1  GCCACTATGTTTTTGTTGTTTTTGTTTTTGTTTGGTGCTGAGGACTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTATGTTTTTGTTGTTTTTGTTTTTGTTTGGTGCTGAGGACTGAAC  400

seq1  CCAAGGCTTTGTGCTTATTTAGCAAGCACTCTGCTACCAAGTTAAATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTTTGTGCTTATTTAGCAAGCACTCTGCTACCAAGTTAAATCCC  450

seq1  CAAACCCCTGCCATCTGTCTTTTGTGTGTACAACCATTCAGTGATAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCTGCCATCTGTCTTTTGTGTGTACAACCATTCAGTGATAATGT  500

seq1  AGAGAATCAAATGGAAAAATCTAAGTCAGAAAGTTTTGTGAAGCAGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATCAAATGGAAAAATCTAAGTCAGAAAGTTTTGTGAAGCAGTAAG  550

seq1  TAGCAGGAATGAGACAAAATGAGACCTGCTTGCCACTCTATTCCCCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAATGAGACAAAATGAGACCTGCTTGCCACTCTATTCCCCAAAG  600

seq1  TCTTTTCCTTAGGGAATTTCCGCTGTAAATCTTCATCCATCCATCCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTTAGGGAATTTCCGCTGTAAATCTTCATCCATCCATCCATCC  650

seq1  ATCCATCCATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTAT  700

seq1  CTACTATATGTAAGTACACTGCAGCTGTTTTCAGACACACCAGAAAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATATGTAAGTACACTGCAGCTGTTTTCAGACACACCAGAAAAGGG  750

seq1  CATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGCTGCTGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGCTGCTGGGAT  800

seq1  TTGAACTCAGGACTTCCAGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAGGACTTCCAGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCC  850

seq1  AACTCTCCAGC-TTCCTCCTATCTTTCTGTCCCCCTTCTTCTGTGGGACC  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCAGCTTTCCTCCTATCTTTCTGTCCCCCTTCTTCTGTGGGACC  900

seq1  TACCCAGAACAATATTTTATCATAGGGAAAATGGATTCTAGGGCTCAGAT  949
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  TACCCAG-ACCATATTTTATCATAGGGAAAATGGATTCTAGGGCTCAGAT  949

seq1  GACAGAACTGCAACACTGACAGCTATAGTTTGCATCGTGT-GTTCTC  995
      ||||| ||||||||||| |||||||||| ||||||| ||| ||||||
seq2  GACAG-ACTGCAACACT-ACAGCTATAG-TTGCATCCTGTGGTTCTC  993

seq1: chr2_154796062_154797229
seq2: B6Ng01-092M17.g_70_1209 (reverse)

seq1  TTGTTTT-AGGAGA---GCAGAACACATGGGGGTGGCA-GCCTAGAGACA  45
      ||||||| ||||||   ||||||||||| || | |||| |||||||  | 
seq2  TTGTTTTAAGGAGAGACGCAGAACACAT-GGAGAGGCACGCCTAGAACCG  49

seq1  GCACGGAAGCTCTGCGCCTTTGCTGGATCTTCATGCATATATTTCTTTTG  95
       ||| ||||||   ||   ||||||  |||| ||||| | ||   | |||
seq2  ACAC-GAAGCT---CGGACTTGCTGATTCTTAATGCA-AAAT---TCTTG  91

seq1  TTCCTTTGTTCTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTT  145
       ||| |   || ||| | |  |   |||                 ||| |
seq2  GTCCCT--GTCCGTTGTATGATCGGTTG-----------------TTGAT  122

seq1  TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGAGAC-AGGGTTT  194
      | |  |||  |||||| |  ||| || | ||||  | ||||| || ||||
seq2  TCG--TTGGATTGTTTGG--TTGGTTAGGTTTG-ATCGAGACAAGAGTTT  167

seq1  CTTTCGTGTAGTCCTGGCTGTAACATACTTTCTTTTCTTTTTTAGAAATT  244
      ||||||||||||||||||||| |||||||||| ||||||||||||||| |
seq2  CTTTCGTGTAGTCCTGGCTGT-ACATACTTTC-TTTCTTTTTTAGAAAAT  215

seq1  TA-TTTGTTTTATATATATGAGTACACTGTAGCTGTCTTCAGGCACACCA  293
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTTATATATATGAGTACACTGTAGCTGTCTTCAGGCACACCA  265

seq1  GAAGAGGGCATCAGATCCCATTACAGATTGTTGTGAGCCACCAAGTGGTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGCATCAGATCCCATTACAGATTGTTGTGAGCCACCAAGTGGTT  315

seq1  GCTTAGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTGACT  393
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAAATGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTGACT  365

seq1  GCTGAGCCATCTCTCCAATTGTATGTATATATTCCTTAATCTATGTCCAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCATCTCTCCAATTGTATGTATATATTCCTTAATCTATGTCCAC  415

seq1  TGTTATATCCTTTATGACAAAGTGGTGAATCTAAGTGTCTTTCTAAGGTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATCCTTTATGACAAAGTGGTGAATCTAAGTGTCTTTCTAAGGTC  465

seq1  TGTGAGCTGCTGACAGTACCCAGCCTCTCTCCACCTTTCAACGTGCCTTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGCTGACAGTACCCAGCCTCTCTCCACCTTTCAACGTGCCTTC  515

seq1  TAGAACACTGATGTGTCATGGTGCCTTCTAGAACACTGATGTGTCATGGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACACTGATGTGTCATGGTGCCTTCTAGAACACTGATGTGTCATGGT  565

seq1  GCCTTCTAGAACACTGATGTGTCATGGTGCCTTCTAGAACACTGATGTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTAGAACACTGATGTGTCATGGTGCCTTCTAGAACACTGATGTGT  615

seq1  CATGGTGCCTTCTAGAACACTGATGTGTCATAGCGCCTTCTAGAACACTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGCCTTCTAGAACACTGATGTGTCATAGCGCCTTCTAGAACACTG  665

seq1  ATGTGTCATGGTGCCATCTAGAACACTGACTGTGTCATGGTGCCTTCTAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATGGTGCCATCTAGAACACTGACTGTGTCATGGTGCCTTCTAG  715

seq1  AACACTGATGTGTCATGGTGCCTTCTAGAACTCTGACTGTGTCATGGCTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGATGTGTCATGGTGCCTTCTAGAACTCTGACTGTGTCATGGCTC  765

seq1  CTACGCTGCTCTTGGCTGCTTCTCACTCTATCCTCTAAGTCTCAGCCTCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGCTGCTCTTGGCTGCTTCTCACTCTATCCTCTAAGTCTCAGCCTCC  815

seq1  ACAGCTCTCACCCCAGGCAGCACGAGCTTTCCCTCCATTAATGTACCAGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTCACCCCAGGCAGCACGAGCTTTCCCTCCATTAATGTACCAGG  865

seq1  TTCTGAAAGGCAGACTGACTGCTTCATCTGCCTCTCCTCAGATTCATTGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGGCAGACTGACTGCTTCATCTGCCTCTCCTCAGATTCATTGC  915

seq1  AAGGCACAGTAACAGGCACATGTCCATACACATCTGTCAAGCCAATCAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAGTAACAGGCACATGTCCATACACATCTGTCAAGCCAATCAAA  965

seq1  GCATGGGTGGAAAGGAAGATGTAAGGGAAACCATTCTCTGTCTTCGCTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTGGAAAGGAAGATGTAAGGGAAACCATTCTCTGTCTTCGCTTT  1015

seq1  CCTCACAGACGAAGCGCCTCTGATCATTCTGTCACCACCTCTAGCTCACA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGACGAAGCGCCTCTGATCATTCTGTCACCACCTCTAGCTCACA  1065

seq1  CCTTGTCTCACCTCAGATGCAAGAAAGGGCTGGCCCTGTGCAAACCGGGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTCACCTCAGATGCAAGAAAGGGCTGGCCCTGTGCAAACCGGGA  1115

seq1  CCTTGAGAATATGACTTGGGAATTC  1168
      |||||||||||||||||||||||||
seq2  CCTTGAGAATATGACTTGGGAATTC  1140