BAC Information

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BAC

Clone NameB6Ng01-093D17
Chromosome2 (Build37)
Map Location 25,477,099 - 25,646,909
singlet/doubletdoublet
Overlap geneTmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858
Upstream geneCacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik
Downstream geneGlt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093D17.bB6Ng01-093D17.g
ACCDH904774DH904775
length1,0951,000
definitionDH904774|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D17, 5' end.DH904775|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,477,099 - 25,478,208)(25,646,391 - 25,646,909)
sequence
gaattcttttgctccccaagacctcttacctgtgacaaaagtgaaaacgc
ccttcatgaaggcgtgcgactggcaggcagcaaattcctcgagtccctgg
gattagggggcggggaaggtgttcgtggctcagttctctttcctcgcctc
ctgcttctcctttagccacgacctggccttggcgagggagaatggatata
ttccaccctcccctaaacccatttagcgtgccctatccctaagtcaggag
ggttcccccactcctccactccctgacagggcttcccctgcctctacttt
gcctcaggtcagcatcgtagggtcagctctctggcccccaggctagcctt
ctcaccgggtgcctggcggccacggcgtcatccacacgggacaagcccag
attcaccatggttggtcaggttctgccagggaggacttggggggcggggc
ggggctcaagactcgggcctgcgcagaacgcagaacgtagcagagacagt
caagctctgtccggcttagggggcgggacctataaccgcgagcttctgat
gggcgtgacagagcagttgaaattgggggttttgtgacctcgaaccaggc
ctaactttcctcacccctcattttcatactcatagagcacattgattgtt
tttgtttttgttttagatttattatatgtaagtacactgtagctgtcttt
cagggagtcacatctcattacagatggttgtgagccaccatgtggtttct
gggatttgaactcaggaccttaggaagagcagtccgagctcttagccacc
gagccatctctccagcccccacattgattgttcttactacatgagatggg
actttaagactacagttaagggttctctctctgaaaggcacacagaattc
cagaagtcactcgatccttttttggtgtcagggcatggggtcctatggaa
agtcacagagttctcgcctctctccactcccgcttcttctcttcttcccc
tccctcttcttaagaaaagggtccttggctttgcctggctgtccacttgc
tctgtagggcaggttgggcttccaactccggagatttgccttttt
gaattcagctgccccttccaggaatttgcattcagtactgtcttattgta
ggagggctcagggtcttgagagatactagagaatatgagggaggaagtta
gccgagaggagttctgtttatgtagcgatgggaagcatcatccacactgg
gtgaagactttctggtgaagatgctttgggtccccccatgcttctttaag
taacttcatcagttctccaggctctgacagcatgctcagtaacccaagga
ggggatgtgaggtcagcaatgttataaaacaggctcgctcacatactctt
tgtggatgaggcaaactctaactagcaagctctaactactttacatatat
gtatgtgtacatacatacacatttgatggatggaacaaacaaagctccca
acaactccacacatatacagagacagatatatatacattcatacattgag
tggatggagcatacaaagctctggccactttacatatatacatatacaca
catttatggtggacggtgcagactcaaacaagcaggctccaacaacgtta
gttttccttccacagcttatatatcccagaaaaatctttcaagacatata
gaaattacaatgtgactacatttttttcttttagtaaataattaagaaaa
cactgtgttccccaaatacctttacatggaaaacattatgtagtataggt
aaagaaaacaaattatccccaagaaaccaatggacattcaaagctaagca
acttgttacagattaacagcagagtgtaagcaagcactttctcttactgc
aggctacaatgtgcagttacaaagaaaggatcaatttatttttattattt
tatcttaaaagtatttataaaaatcttaaaagatcacaaatctattatgc
ttatataaaaaaaacttcacggtgcacacctactcatcagcaaatgttac
taatcataccaaattgccatcaggaagctgaggcaaaaatgggtacaaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25477099_25478208
seq2: B6Ng01-093D17.b_47_1141

seq1  GAATTCTTTTGCTCCCCAAGACCTCTTACCTGTGACAAAAGTGAAAACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCTCCCCAAGACCTCTTACCTGTGACAAAAGTGAAAACGC  50

seq1  CCTTCATGAAGGCGTGCGACTGGCAGGCAGCAAATTCCTCGAGTCCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGAAGGCGTGCGACTGGCAGGCAGCAAATTCCTCGAGTCCCTGG  100

seq1  GATTAGGGGGCGGGGAAGGTGTTCGTGGCTCAGTTCTCTTTCCTCGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGGGGCGGGGAAGGTGTTCGTGGCTCAGTTCTCTTTCCTCGCCTC  150

seq1  CTGCTTCTCCTTTAGCCACGACCTGGCCTTGGCGAGGGAGAATGGATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTCCTTTAGCCACGACCTGGCCTTGGCGAGGGAGAATGGATATA  200

seq1  TTCCACCCTCCCCTAAACCCATTTAGCGTGCCCTATCCCTAAGTCAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCCTCCCCTAAACCCATTTAGCGTGCCCTATCCCTAAGTCAGGAG  250

seq1  GGTTCCCCCACTCCTCCACTCCCTGACAGGGCTTCCCCTGCCTCTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCCCACTCCTCCACTCCCTGACAGGGCTTCCCCTGCCTCTACTTT  300

seq1  GCCTCAGGTCAGCATCGTAGGGTCAGCTCTCTGGCCCCCAGGCTAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGTCAGCATCGTAGGGTCAGCTCTCTGGCCCCCAGGCTAGCCTT  350

seq1  CTCACCGGGTGCCTGGCGGCCACGGCGTCATCCACACGGGACAAGCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCGGGTGCCTGGCGGCCACGGCGTCATCCACACGGGACAAGCCCAG  400

seq1  ATTCACCATGGTTGGTCAGGTTCTGCCAGGGAGGACTTGGGGGGCGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCATGGTTGGTCAGGTTCTGCCAGGGAGGACTTGGGGGGCGGGGC  450

seq1  GGGGCTCAAGACTCGGGCCTGCGCAGAACGCAGAACGTAGCAGAGACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCAAGACTCGGGCCTGCGCAGAACGCAGAACGTAGCAGAGACAGT  500

seq1  CAAGCTCTGTCCGGCTTAGGGGGCGGGACCTATAACCGCGAGCTTCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTGTCCGGCTTAGGGGGCGGGACCTATAACCGCGAGCTTCTGAT  550

seq1  GGGCGTGACAGAGCAGTTGAAATTGGGGGTTTTGTGACCTCGAACCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGACAGAGCAGTTGAAATTGGGGGTTTTGTGACCTCGAACCAGGC  600

seq1  CTAACTTTCCTCACCCCTCATTTTCATACTCATAGAGCACATTGATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTTCCTCACCCCTCATTTTCATACTCATAGAGCACATTGATTGTT  650

seq1  TTTGTTTTTGTTTTAGATTTATTATATGTAAGTACACTGTAGCTGTC-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGTTTTTGTTTTAGATTTATTATATGTAAGTACACTGTAGCTGTCTTT  700

seq1  CAGGGAGTCACATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTCACATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTTCT  750

seq1  GGGATTTGAACTCAGGACCTTAGGAAGAGCAGTCCGAGCTCTTAGCCACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGAACTCAGGACCTTAGGAAGAGCAGTCCGAGCTCTTAGCCACC  800

seq1  GAGCCATCTCTCCAGCCCCCACATTGATTGTTCTTACTACATGAGATGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCTCCAGCCCCCACATTGATTGTTCTTACTACATGAGATGGG  850

seq1  ACTTTAAGACTACAGTTAAGGGTTCTCTCTCTGAAAGGCACAACAGAATT  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTTTAAGACTACAGTTAAGGGTTCTCTCTCTGAAAGGCAC-ACAGAATT  899

seq1  CCAGAAGTTCACTCGAACCCTTTTTTGGTGTCAGGGCATGGGGTCCTATG  949
      ||||||| ||||||| | ||||||||||||||||||||||||||||||||
seq2  CCAGAAG-TCACTCG-ATCCTTTTTTGGTGTCAGGGCATGGGGTCCTATG  947

seq1  GAAAAGTTCACAGAGTTCCTCGCCCTCTTCCTCCACTCCCCGCTTCTTTC  999
      ||||   |||||||||| |||| |||||  ||||||| |||||||| |||
seq2  GAAA--GTCACAGAGTT-CTCG-CCTCT--CTCCACT-CCCGCTTC-TTC  989

seq1  TCTTCTTCCCCCTCCCCTCTTTTCTTTAAGAAAAGGGTTCTCTGCTTAGC  1049
      |||||||||||   |||||||    ||||||||||||| ||  |||| | 
seq2  TCTTCTTCCCC--TCCCTCTT---CTTAAGAAAAGGGTCCTTGGCTTTG-  1033

seq1  CCTGGCTGTCCAACTTGCTCTGTAGGGCA-GTCTGGCTTCCAACT-CAGA  1097
      ||||||||||| ||||||||||||||||| ||  ||||||||||| | ||
seq2  CCTGGCTGTCC-ACTTGCTCTGTAGGGCAGGTTGGGCTTCCAACTCCGGA  1082

seq1  GATTTGCCTTTTT  1110
      |||||||||||||
seq2  GATTTGCCTTTTT  1095

seq1: chr2_25646391_25646909
seq2: B6Ng01-093D17.g_68_586 (reverse)

seq1  GCACCGTCCACCATAAATGTGTGTATATGTATATATGTAAAGTGGCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGTCCACCATAAATGTGTGTATATGTATATATGTAAAGTGGCCAGA  50

seq1  GCTTTGTATGCTCCATCCACTCAATGTATGAATGTATATATATCTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTATGCTCCATCCACTCAATGTATGAATGTATATATATCTGTCTC  100

seq1  TGTATATGTGTGGAGTTGTTGGGAGCTTTGTTTGTTCCATCCATCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTGTGGAGTTGTTGGGAGCTTTGTTTGTTCCATCCATCAAATG  150

seq1  TGTATGTATGTACACATACATATATGTAAAGTAGTTAGAGCTTGCTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTACACATACATATATGTAAAGTAGTTAGAGCTTGCTAGTT  200

seq1  AGAGTTTGCCTCATCCACAAAGAGTATGTGAGCGAGCCTGTTTTATAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGCCTCATCCACAAAGAGTATGTGAGCGAGCCTGTTTTATAACA  250

seq1  TTGCTGACCTCACATCCCCTCCTTGGGTTACTGAGCATGCTGTCAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACCTCACATCCCCTCCTTGGGTTACTGAGCATGCTGTCAGAGCC  300

seq1  TGGAGAACTGATGAAGTTACTTAAAGAAGCATGGGGGGACCCAAAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACTGATGAAGTTACTTAAAGAAGCATGGGGGGACCCAAAGCATC  350

seq1  TTCACCAGAAAGTCTTCACCCAGTGTGGATGATGCTTCCCATCGCTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAGAAAGTCTTCACCCAGTGTGGATGATGCTTCCCATCGCTACAT  400

seq1  AAACAGAACTCCTCTCGGCTAACTTCCTCCCTCATATTCTCTAGTATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACTCCTCTCGGCTAACTTCCTCCCTCATATTCTCTAGTATCTC  450

seq1  TCAAGACCCTGAGCCCTCCTACAATAAGACAGTACTGAATGCAAATTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCCTGAGCCCTCCTACAATAAGACAGTACTGAATGCAAATTCCT  500

seq1  GGAAGGGGCAGCTGAATTC  519
      |||||||||||||||||||
seq2  GGAAGGGGCAGCTGAATTC  519