BAC Information

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BAC

Clone NameB6Ng01-093E12
Chromosome2 (Build37)
Map Location 16,636,753 - 16,745,737
singlet/doubletdoublet
Overlap genePlxdc2
Upstream geneLOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093E12.bB6Ng01-093E12.g
ACCDH904812DH904813
length1,1871,103
definitionDH904812|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E12, 5' end.DH904813|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,636,753 - 16,637,948)(16,744,627 - 16,745,737)
sequence
gaattcaactcaacttaactatgtttttctgctacaccaaaatggtgaaa
attagttcaagctccaaaaacatgagcagatttcattttttaaagttgtc
atccaccaccaaagcatcggaaattgcattcaatagattgccttagaggg
tttccattgggttgactggagttttctgtgtaagaatatttgagcacaca
ttttttaaattaataaatttatttattcactttacatcctaattacattg
gcttccgctcctcccagtacccccttcagacagtccctccccctcccttc
ctccccttcttctctgaaaagggggagggccccctgggtaccaacccaac
ctggcatatcaaatcaatgcaggactaggtacaacctcttccacttcctc
ttccactgagatcagataagacagccaggtaaggggaaagaaatccacag
gcaagaaacagagtcagggatagtcatgactccagttaatggggggaacc
tgtgaagaccaaactgcatatctgctcatatgtgtggcgtggcctagatc
cagaccatgtatgctctttggttggtagttcagtttctgggatcccacaa
ggatccaggttagttgattctgttgttctttgtagagttcctatctactc
catgtcctcagtccttctcccaactcttccaaaagattcccagagatctg
ttccatgtttggttgtggttctctgcatctgtttttgttagctgctggta
gatcctctcagaagacaatagttttcttatgctcaacccctgtctgtaag
tataacatatcattaatggtgtctgcagtaagagatgatgaaatcgctgc
aatggtgcatgttgattaagctaattcagagcaaatgtctcaatgtgaat
ggtgggagaagccaacagagatgagctttgttgctcccaaggaatagttg
gttaactcgaatcctcttgtgttcgatttcctatttctgacttaagccca
gacattttgtttgcagataatgttagaactttattcttgactttcaaaac
tgtttcctgtggccccctctttctccctgccatttttgttggttccttta
gtctggtgtccagatcagggtgtgtctgtgtacattttttcctccagtca
atactttctctcccaatattaaatcatcaaggcacca
gaattctcatcctaacttccccaaaattgggtcgtgaactacaagcaaaa
cctaaccagtttcatccctagattttggatatcgtgttcatcacagcgaa
acagcaagcagactggaacaagtaccaagagaaaatgcttccccacaatg
aagcacggggctgacagtagcagtaaaatttgagcagtaattacttcaca
tgcgttaagctcactttaaccttttctcttcttggggctcaggataacac
aaatgcctgggctctgtgggctcttcctaggttaatcagtatgtaagatg
tatgggtttagttggttatttcctggccaccaaactctcatgggcaatct
atttatgtctctgtgaaggttcagaagcaaatccctaaggccagtcacat
aagtgataactatcagatagctacactgaaggaagctgcattttcccagg
tgtccttggaaacctgtgctcctcaaaggcctagctaacatagttacggt
agctttctaagatcaacatcttagaaacatggtttgatcacagaattgag
tcattaaaagaagaagaagaaaagacttagagaacacaaccctgaaaaaa
tgaagcatctcagaatgacatcaattctattagtggttttaaagtaggaa
tggaagtgaatgaactatgcccagcaaacggaagaaagagtgctattaat
ttgatgggttaagtgatagtgtctcttcctactattaaatcagcaagagt
aaagtttttaatgagtaaatttaagtatccttaaagtgaatatacccagt
gtaaaagacttcaaaactgcattatcttcagagagagcaattggacctga
gtggtgtttgacatttgcaagttaactactagcattaggtacacacacac
acacacacacacacacacacacacacacacacacacacacgttgtgcaca
agcacagtctgcaaaacttgtctgagttatttaattatcagctacttcac
tggagccgtttatcagcttaggagtccttggggaggcatgccttttccag
gaaccaaatggtactttccaggattcaggtcaatagtaaccatttttttg
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16636753_16637948
seq2: B6Ng01-093E12.b_44_1230

seq1  GAATTCAACTCAACTTAACTATGTTTTTCTGCTACACCAAAATGGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCAACTTAACTATGTTTTTCTGCTACACCAAAATGGTGAAA  50

seq1  ATTAGTTCAAGCTCCAAAAACATGAGCAGATTTCATTTTTTAAAGTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCAAGCTCCAAAAACATGAGCAGATTTCATTTTTTAAAGTTGTC  100

seq1  ATCCACCACCAAAGCATCGGAAATTGCATTCAATAGATTGCCTTAGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCACCAAAGCATCGGAAATTGCATTCAATAGATTGCCTTAGAGGG  150

seq1  TTTCCATTGGGTTGACTGGAGTTTTCTGTGTAAGAATATTTGAGCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTGGGTTGACTGGAGTTTTCTGTGTAAGAATATTTGAGCACACA  200

seq1  TTTTTTAAATTAATAAATTTATTTATTCACTTTACATCCTAATTACATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATTAATAAATTTATTTATTCACTTTACATCCTAATTACATTG  250

seq1  GCTTCCGCTCCTCCCAGTACCCCCTTCAGACAGTCCCTCCCCCTCCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCGCTCCTCCCAGTACCCCCTTCAGACAGTCCCTCCCCCTCCCTTC  300

seq1  CTCCCCTTCTTCTCTGAAAAGGGGGAGGGCCCCCTGGGTACCAACCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTCTTCTCTGAAAAGGGGGAGGGCCCCCTGGGTACCAACCCAAC  350

seq1  CTGGCATATCAAATCAATGCAGGACTAGGTACAACCTCTTCCACTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATATCAAATCAATGCAGGACTAGGTACAACCTCTTCCACTTCCTC  400

seq1  TTCCACTGAGATCAGATAAGACAGCCAGGTAAGGGGAAAGAAATCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGAGATCAGATAAGACAGCCAGGTAAGGGGAAAGAAATCCACAG  450

seq1  GCAAGAAACAGAGTCAGGGATAGTCATGACTCCAGTTAATGGGGGGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAACAGAGTCAGGGATAGTCATGACTCCAGTTAATGGGGGGAACC  500

seq1  TGTGAAGACCAAACTGCATATCTGCTCATATGTGTGGCGTGGCCTAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGACCAAACTGCATATCTGCTCATATGTGTGGCGTGGCCTAGATC  550

seq1  CAGACCATGTATGCTCTTTGGTTGGTAGTTCAGTTTCTGGGATCCCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCATGTATGCTCTTTGGTTGGTAGTTCAGTTTCTGGGATCCCACAA  600

seq1  GGATCCAGGTTAGTTGATTCTGTTGTTCTTTGTAGAGTTCCTATCTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGGTTAGTTGATTCTGTTGTTCTTTGTAGAGTTCCTATCTACTC  650

seq1  CATGTCCTCAGTCCTTCTCCCAACTCTTCCAAAAGATTCCCAGAGATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCAGTCCTTCTCCCAACTCTTCCAAAAGATTCCCAGAGATCTG  700

seq1  TTCCATGTTTGGTTGTGGTTCTCTGCATCTGTTTTTGTTAGCTGCTGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTTTGGTTGTGGTTCTCTGCATCTGTTTTTGTTAGCTGCTGGTA  750

seq1  GATCCTCTCAGAAGACAATAGTTTTCTTATGCTCAACCCCTGTCTGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTCAGAAGACAATAGTTTTCTTATGCTCAACCCCTGTCTGTAAG  800

seq1  TATAACATATCATTAATGGTGTCTGCAGTAAGAGATGATGAAATCGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATATCATTAATGGTGTCTGCAGTAAGAGATGATGAAATCGCTGC  850

seq1  AATGGTGCATGTTGATTAAGCTAATTCAGGAGCAAATGTCTCAAATGTGA  900
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  AATGGTGCATGTTGATTAAGCTAATTCA-GAGCAAATGTCTC-AATGTGA  898

seq1  ATGGTGGGAGAAGCCAACAGAGATGAGCTTTGTTGCTCCCAAGGAATAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGAGAAGCCAACAGAGATGAGCTTTGTTGCTCCCAAGGAATAGT  948

seq1  TGGTTAACTCGAATCCTCTTGTGTTCGATTTCCTATTTCTGAACTTAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGTTAACTCGAATCCTCTTGTGTTCGATTTCCTATTTCTG-ACTTAAGC  997

seq1  CCAAGACATTTTGTCTGCAGATAAATGTTAGAACTTTATTC-TGACTTTC  1049
      || ||||||||||| ||||||| |||||||||||||||||| ||||||||
seq2  CC-AGACATTTTGTTTGCAGAT-AATGTTAGAACTTTATTCTTGACTTTC  1045

seq1  AAAAAACTGTTT-CTGT-GCCCCCTCTTTCCTCCCTGCCATTTTTTGTTT  1097
        |||||||||| |||| ||||||||||| |||||||||| |||||||| 
seq2  --AAAACTGTTTCCTGTGGCCCCCTCTTT-CTCCCTGCCA-TTTTTGTTG  1091

seq1  GTTCCTTTAGTCTGTTGTCACAGATCAAGTGTGT-TCTGT-TACA-TTTA  1144
      |||||||||||||| |||| |||||| || |||| ||||| |||| ||| 
seq2  GTTCCTTTAGTCTGGTGTC-CAGATC-AGGGTGTGTCTGTGTACATTTTT  1139

seq1  TCCTCCAGTCAAATTACTTTCTCTCTCAAATATATAAATCATCAAGGCAC  1194
      ||||||||||||  ||||||||||| | ||||| ||||||||||||||||
seq2  TCCTCCAGTCAA--TACTTTCTCTC-CCAATAT-TAAATCATCAAGGCAC  1185

seq1  CA  1196
      ||
seq2  CA  1187

seq1: chr2_16744627_16745737
seq2: B6Ng01-093E12.g_68_1170 (reverse)

seq1  TTTCAAAAAAATGCTTAACTATCTGACCTGAAATCCTGGGAAAGTAACCA  50
      ||||||||||||| || ||||| ||||||| |||||| ||||||||  | 
seq2  TTTCAAAAAAATGGTT-ACTAT-TGACCTG-AATCCT-GGAAAGTA--CC  44

seq1  ATTTGGTTCCCTGAAAAAGGCA-GCCTCCCAGAGAACTCCTAAACCTGAT  99
      |||||||| |||| |||||||| |||||||  || |||||| || |||||
seq2  ATTTGGTT-CCTGGAAAAGGCATGCCTCCCCAAGGACTCCT-AAGCTGAT  92

seq1  AAACGGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAGACAAGTTCT  149
      |||||||| ||||||||||||| ||||   || ||||||||||||||| |
seq2  AAACGGCTCCAGTGAAGTAGCT-GATAATTAAATAACTCAGACAAGTTTT  141

seq1  GCAGACTGTGCTTGTGCACAACGTGTGTGTGTGTGTGTGTGTGTGTGTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGTGCTTGTGCACAACGTGTGTGTGTGTGTGTGTGTGTGTGTGT  191

seq1  GTGTGTGTGTGTGTGTGTGTGTACCTAATGCTAGTAGTTAACTTGCAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTACCTAATGCTAGTAGTTAACTTGCAAAT  241

seq1  GTCAAACACCACTCAGGTCCAATTGCTCTCTCTGAAGATAATGCAGTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACACCACTCAGGTCCAATTGCTCTCTCTGAAGATAATGCAGTTTT  291

seq1  GAAGTCTTTTACACTGGGTATATTCACTTTAAGGATACTTAAATTTACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTTTACACTGGGTATATTCACTTTAAGGATACTTAAATTTACTC  341

seq1  ATTAAAAACTTTACTCTTGCTGATTTAATAGTAGGAAGAGACACTATCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACTTTACTCTTGCTGATTTAATAGTAGGAAGAGACACTATCAC  391

seq1  TTAACCCATCAAATTAATAGCACTCTTTCTTCCGTTTGCTGGGCATAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCATCAAATTAATAGCACTCTTTCTTCCGTTTGCTGGGCATAGTT  441

seq1  CATTCACTTCCATTCCTACTTTAAAACCACTAATAGAATTGATGTCATTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTTCCATTCCTACTTTAAAACCACTAATAGAATTGATGTCATTC  491

seq1  TGAGATGCTTCATTTTTTCAGGGTTGTGTTCTCTAAGTCTTTTCTTCTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCTTCATTTTTTCAGGGTTGTGTTCTCTAAGTCTTTTCTTCTTC  541

seq1  TTCTTTTAATGACTCAATTCTGTGATCAAACCATGTTTCTAAGATGTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAATGACTCAATTCTGTGATCAAACCATGTTTCTAAGATGTTGA  591

seq1  TCTTAGAAAGCTACCGTAACTATGTTAGCTAGGCCTTTGAGGAGCACAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAAGCTACCGTAACTATGTTAGCTAGGCCTTTGAGGAGCACAGG  641

seq1  TTTCCAAGGACACCTGGGAAAATGCAGCTTCCTTCAGTGTAGCTATCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGGACACCTGGGAAAATGCAGCTTCCTTCAGTGTAGCTATCTGA  691

seq1  TAGTTATCACTTATGTGACTGGCCTTAGGGATTTGCTTCTGAACCTTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATCACTTATGTGACTGGCCTTAGGGATTTGCTTCTGAACCTTCAC  741

seq1  AGAGACATAAATAGATTGCCCATGAGAGTTTGGTGGCCAGGAAATAACCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATAAATAGATTGCCCATGAGAGTTTGGTGGCCAGGAAATAACCA  791

seq1  ACTAAACCCATACATCTTACATACTGATTAACCTAGGAAGAGCCCACAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACCCATACATCTTACATACTGATTAACCTAGGAAGAGCCCACAGA  841

seq1  GCCCAGGCATTTGTGTTATCCTGAGCCCCAAGAAGAGAAAAGGTTAAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCATTTGTGTTATCCTGAGCCCCAAGAAGAGAAAAGGTTAAAGT  891

seq1  GAGCTTAACGCATGTGAAGTAATTACTGCTCAAATTTTACTGCTACTGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAACGCATGTGAAGTAATTACTGCTCAAATTTTACTGCTACTGTC  941

seq1  AGCCCCGTGCTTCATTGTGGGGAAGCATTTTCTCTTGGTACTTGTTCCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGTGCTTCATTGTGGGGAAGCATTTTCTCTTGGTACTTGTTCCAG  991

seq1  TCTGCTTGCTGTTTCGCTGTGATGAACACGATATCCAAAATCTAGGGATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGCTGTTTCGCTGTGATGAACACGATATCCAAAATCTAGGGATG  1041

seq1  AAACTGGTTAGGTTTTGCTTGTAGTTCACGACCCAATTTTGGGGAAGTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTTAGGTTTTGCTTGTAGTTCACGACCCAATTTTGGGGAAGTTA  1091

seq1  GGATGAGAATTC  1111
      ||||||||||||
seq2  GGATGAGAATTC  1103