BAC Information

Click to search

BAC

Clone NameB6Ng01-093L12
Chromosome2 (Build37)
Map Location 33,533,570 - 33,534,621
singlet/doubletsinglet
Overlap genenone
Upstream geneEng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918
Downstream gene2610528K11Rik, LOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093L12.bB6Ng01-093L12.g
ACCDH905129DH905130
length1,2511,050
definitionDH905129|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L12, 5' end.DH905130|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgatacagtcctttgacttttttgactccagcattccttctt
gggtatttcctatactctctatctctattggttttctctatttggcatta
ttctcatgttccctccagtgtttagatgtggtttctcttagtcctttgaa
catatttgaaatagctgatgtgcagcctttccccataagcccgacatctg
tgttttcataggaatggcttcagtggacggaacgcttcctgtttgcagcc
atattttcttgtttcttcacatgtctcaattttgtcataggaactggata
tttccaataattgaatgtgacaactcaggaaattcagtccctccttcctt
tcctggttgagtatctcgtgattgcttttggtcattgactgtttagagtt
ttgtgagctaactctgtgaagtctatactcttcatcacgcgtggccactg
atatctcttatggttagcttcgtgatcaactaataagtgaacaaaagtat
tttgagatgccttggagccattaaaagtctccaagtcatttttaaacatt
gattgattgattgattgattgattgattgaatgtgtgtatgtgcatgtgg
tggcatgtatgtacatgtacaagcacaccacagaacacatgtagaagttt
ggaagacagttttctggagttggttttccccttccactgtgcatgtccca
gggaccaaactcaggctgtctgacttggaagcaagcacctttagctgctg
agcctttgtaccagccccaaggtctctgagtctttcagaggggttacatc
tgtatgcacattaactatgccgtcaattctcaaatggtcaatgtacaact
ctacctcactgccacactctggttgcaaagaacttccatggtactggagg
cgagagcctaagccctccgtgcatctctttagatcatgagtactgtatgc
atgtagccatctttacttcttgggacatgccaaagccttttcatgctcct
tgaatgacaagaaacaaacccagtagtagggttttcttggaaacctccac
cagttcatacggactactctcctgggagaaggcctcaagatgctcgattg
cgtttccctctacgctacggcgtgggttgctctcatccacacaaggctgc
tggagactaaggtcaattgaacatgatagggtaatacaacaaagctggtc
tcagacggcatggacttccttaaacaatccaatgtccagcttgtgatttc
a
gaattcacacctggggaggaattggagatacagcccctgcagcaggagca
catgctcacactaacacatacacacacacacacacacacacacacacaca
cacacacacacactgtactcaagcttcatgcccaggtttgggtgccgtct
gtagcgactgagtcccggaccaattgtccgagtggttgctgtatgccaga
caagttctctaattctcattagccctgctggaatgaaaattcagttggca
aagcacacactggggtgcacacacatgggagctgagctggatccacaaaa
cacatataaaatacaaaacaacagcaaaataggcgtggggtggggtttgt
aatctcagtgctgtgaaggccaaaacgaacagatccttggggctcactgg
ctgaccagcctcgcctaacaggggagtacaggccattgagagaccctgtc
tcaaaaatagggtgcatggcatgaccagggagcaacacacacaaagcgca
caagcacttccagccacatgcacacaaataaaataaaaataaaatagtga
taataaatatgtaataaattgggcagagtgtcctcttcatcaaaggttta
ccgactcggacagtcgacccagggaggagcactccactgctacatggaga
gctggcttgaagtcagctcagttggactgggagtttgattttctcaacat
ggagaactggttggggcaactggacccccagggtaggcaagggcagggcc
tggattcatggctttctagagttggacagttctcagtccctcggctgacc
cactccgagctcatcttgaccctgggaagctgacctgtggagatgcagga
tgggggcggtgttcccctcagtggccttgctgaaggggccacactgcaga
cagtcctgagtggagacaggagactggtaaaggacctgacagagttcata
agagcttgcctcccagagcccatttccctgtgtagagctcagtttctggt
atttgagcagatccatgtggttgatctgggtggggttgtcctgggggggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_33533570_33534621
seq2: B6Ng01-093L12.g_67_1116 (reverse)

seq1  CCCCACCCAGAACAACCCCA-CCAGATCAACCAACATGGATCTGCTCAAA  49
      |||| ||||| ||||||||| ||||||||||| |||||||||||||||||
seq2  CCCCCCCCAGGACAACCCCACCCAGATCAACC-ACATGGATCTGCTCAAA  49

seq1  TA-CAGAAACTGAGGCTCTACACAGGGAAATGGGCTCTGGGA-GCAAGCT  97
      || |||||||||| |||||||||||||||||||||||||||| |||||||
seq2  TACCAGAAACTGA-GCTCTACACAGGGAAATGGGCTCTGGGAGGCAAGCT  98

seq1  CTGTATGGAACTCTTGTCAGGTCC-TTACCAGTCTCCTGTCTCCACTTCA  146
      || ||| |||||| |||||||||| ||||||||||||||||||||| |||
seq2  CT-TAT-GAACTC-TGTCAGGTCCTTTACCAGTCTCCTGTCTCCAC-TCA  144

seq1  GGACTGTCTGCAGTGTGGCCCCTTCAGCAAGGCCACTGAGGGGAACACCG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTCTGCAGTGTGGCCCCTTCAGCAAGGCCACTGAGGGGAACACCG  194

seq1  CCCCCATCCTGCATCTCCACAGGTCAGCTTCCCAGGGTCAAGATGAGCTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCCTGCATCTCCACAGGTCAGCTTCCCAGGGTCAAGATGAGCTC  244

seq1  GGAGTGGGTCAGCCGAGGGACTGAGAACTGTCCAACTCTAGAAAGCCATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGTCAGCCGAGGGACTGAGAACTGTCCAACTCTAGAAAGCCATG  294

seq1  AATCCAGGCCCTGCCCTTGCCTACCCTGGGGGTCCAGTTGCCCCAACCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGGCCCTGCCCTTGCCTACCCTGGGGGTCCAGTTGCCCCAACCAG  344

seq1  TTCTCCATGTTGAGAAAATCAAACTCCCAGTCCAACTGAGCTGACTTCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATGTTGAGAAAATCAAACTCCCAGTCCAACTGAGCTGACTTCAA  394

seq1  GCCAGCTCTCCATGTAGCAGTGGAGTGCTCCTCCCTGGGTCGACTGTCCG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCTCCATGTAGCAGTGGAGTGCTCCTCCCTGGGTCGACTGTCCG  444

seq1  AGTCGGTAAACCTTTGATGAAGAGGACACTCTGCCCAATTTATTACATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGTAAACCTTTGATGAAGAGGACACTCTGCCCAATTTATTACATAT  494

seq1  TTATTATCACTATTTTATTTTTATTTTATTTGTGTGCATGTGGCTGGAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCACTATTTTATTTTTATTTTATTTGTGTGCATGTGGCTGGAAG  544

seq1  TGCTTGTGCGCTTTGTGTGTGTTGCTCCCTGGTCATGCCATGCACCCTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGCGCTTTGTGTGTGTTGCTCCCTGGTCATGCCATGCACCCTAT  594

seq1  TTTTGAGACAGGGTCTCTCAATGGCCTGTACTCCCCTGTTAGGCGAGGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAGGGTCTCTCAATGGCCTGTACTCCCCTGTTAGGCGAGGCT  644

seq1  GGTCAGCCAGTGAGCCCCAAGGATCTGTTCGTTTTGGCCTTCACAGCACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCCAGTGAGCCCCAAGGATCTGTTCGTTTTGGCCTTCACAGCACT  694

seq1  GAGATTACAAACCCCACCCCACGCCTATTTTGCTGTTGTTTTGTATTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACAAACCCCACCCCACGCCTATTTTGCTGTTGTTTTGTATTTTA  744

seq1  TATGTGTTTTGTGGATCCAGCTCAGCTCCCATGTGTGTGCACCCCAGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTTGTGGATCCAGCTCAGCTCCCATGTGTGTGCACCCCAGTGT  794

seq1  GTGCTTTGCCAACTGAATTTTCATTCCAGCAGGGCTAATGAGAATTAGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGCCAACTGAATTTTCATTCCAGCAGGGCTAATGAGAATTAGAG  844

seq1  AACTTGTCTGGCATACAGCAACCACTCGGACAATTGGTCCGGGACTCAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCTGGCATACAGCAACCACTCGGACAATTGGTCCGGGACTCAGT  894

seq1  CGCTACAGACGGCACCCAAACCTGGGCATGAAGCTTGAGTACAGTGTGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACAGACGGCACCCAAACCTGGGCATGAAGCTTGAGTACAGTGTGTG  944

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTAGTGTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTAGTGTG  994

seq1  AGCATGTGCTCCTGCTGCAGGGGCTGTATCTCCAATTCCTCCCCAGGTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCTCCTGCTGCAGGGGCTGTATCTCCAATTCCTCCCCAGGTGT  1044

seq1  GAATTC  1052
      ||||||
seq2  GAATTC  1050