BAC Information

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BAC

Clone NameB6Ng01-093M08
Chromosome2 (Build37)
Map Location 123,050,803 - 123,051,499
singlet/doubletsinglet
Overlap genenone
Upstream geneSord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093M08.bB6Ng01-093M08.g
ACCDH905162DH905163
length9131,226
definitionDH905162|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M08, 5' end.DH905163|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
atcaccgtcgttccccagctgatgagttctgaattcggcagttgaatcct
tctcaacagtctgctttacgggaacctttatcaccgtcgttccccagctg
atgagttctgaattcggcagttgaatccttctcaacagtctgtgttacgg
gaacctttataaacgtgatccgcagttctggttccggaatgagggatcct
ccttgcgccagtcccgagtttttttctcgtcccggaattcggcaccaatt
gttattagacgcgttctcacgaccggccaggaagaacaccacagaccaga
atcttctgcggcaaagctttattcttacatcttcaggaacagagtgcaag
aagcaagagagcaagaagcaagagagagagaaaagcaagagagagagaaa
agcaagagagagagaaaaacaagagagagaagcaagagagagagaaaagc
aagagagagagaaaagcaagagagagagaaaaacaagagagagaagcaag
agagagagagaaaacgaaaccccgtccctcttaaggagcattctccttcg
cctcggacgtgtcactccttgattggctgcagcccatcggccgagttgac
gtcacggggaaggcagagcacaagtagtcataagatacccttggcacatg
cgcagattatttgtttaccacttagaacacagctgtcagcgccatcttgt
aacggcgaatgtgggcgcggctcccaacactggttcatgaggtatactgt
tttagtgagtgtgcctaatgcaccatataaagaagtagggcctaaggggg
gtggagagcatgaggctcactggtgtaatgcaatgcgtttctttgggaaa
aaaaaagttgatg
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaggccagt
ttgctgattggcctcagggcagtcggcttcaaggtccgccctatgcggag
cccccgccctgcgtagtgcgtcagcaatgcgcagagaggcagtgcgcaga
gaggcagtgcgcagactcattcattcccagagaggaacaaaggaaaatac
aacaggcatttccggtctttgaaggagccgagggtgggcgtgtccacgct
ccggtagaatacttacaaattaaagaaattgccgagtcggttcgtaaata
cggaaccaatgctaattttaccttggtgcagttagacaggctcgctggca
tggcactaactcctgctgactggcaaacggttgtaaaagccgctctccct
agtatgggcaaatatatggaatggagagcgctttggcacgaagctgcaca
agcgcaggcccgagcaaacgcagctgctttgactccagagcagagagatt
ggacttttgacttgttaacgggtcagggagcttattctgctgatcagaca
aactaccattggggagcttatgcccagatttcttccacggctattagggc
ctggaaggcgctctctcgagcaggtgaaaccactggtcagttaacaaaga
taatccagggacctcaggaatccttctcagattttgtggccagaatgaca
gaggcagcagagcgtatttttggagagtcagagcaagctgcgcctctgat
agaacagctaatctatgagcaagccacaaaggagtgccgagcggccatag
ccccaagaaagacaaaggcttacaagactggctcaggtctgtcgagagct
tgggggacctctcagcaatgcagtttagcgctgccatccttcaatcccaa
accgctccatgggcagaatatcagaggacatgtttaactgcgaaagcctg
ggcattttagaagattgcagagctcagataacaggaggactctcactctt
ttgctttagtgtggcaaggttatcatgagctgaacagtgtcgctcttgaa
ggattaaaggcagaggtcctccccacctgtatgtcatcagctatgtggta
aacgggatcatcagtcctgtccagccttatatggaccggttgtagaccag
tgaacgtctaagtgcataacatgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123050803_123051499
seq2: B6Ng01-093M08.b_93_815 (reverse)

seq1  GTGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCC  50
      |||||||||||||| |||||||||||||| |||||||||||||||||  |
seq2  GTGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACA-GC  49

seq1  TGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATCTT  99

seq1  ACGACTACTTGTACTCTGCCTTTCCCGTGAACGTCAGCTCGGCC-ATGGG  149
      | |||||||||| ||||||||| |||||| |||||| ||||||| |||||
seq2  ATGACTACTTGTGCTCTGCCTTCCCCGTG-ACGTCAACTCGGCCGATGGG  148

seq1  CTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCAAAATATAACTCTCCTA  199
      ||||||||||||| |||||||  ||||| |||| ||  | ||  ||||| 
seq2  CTGCAGCCAATCAAGGAGTGACACGTCCGAGGCGAAGGAGAATGCTCCTT  198

seq1  AAAAGGGGACGGGGTTTTCCGCCAT-TCTCTCTCGCTGGC--ATCTCTCT  246
      || | ||||||||||||  ||   | |||||||| || ||   |||||||
seq2  AAGA-GGGACGGGGTTT--CGTTTTCTCTCTCTCTCTTGCTTCTCTCTCT  245

seq1  GGCTCTGCGCGC---CCTGC---GCTCTCTCGC-TGCCTAAAGATGTAAA  289
       | | | | | |   | |||    ||||||| | ||| |     | |   
seq2  TGTTTTTCTCTCTCTCTTGCTTTTCTCTCTCTCTTGCTTTTCTCTCT---  292

seq1  CAATAG-AGCGCGCTCTGCGCTTTGGTGGCGCCGGAGC-TCTGGCTC-CT  336
      |  | |   | | ||||  | |||  |  | |    || | |  ||| ||
seq2  CTCTTGCTTCTCTCTCT-TGTTTTTCTCTCTCTCTTGCTTTTCTCTCTCT  341

seq1  AAAGATGTAAGATAGAAGGGGCTTTCGCTTTTGGGGCTGGGGGT--TTGC  384
         | | |    |        || | |||| | |  ||   | |  ||||
seq2  CTTGCTTTTCTCT------CTCTCTTGCTTCTTGCTCTCTTGCTTCTTGC  385

seq1  GCTCCTAGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGATTC  434
       |||   | ||||||||||||||| ||||||| |||||||||||||||||
seq2  ACTC--TGTTCCTGAAGATGTAAG-AATAAAGCTTTGCCGCAGAAGATTC  432

seq1  TGGTCTGTTGTGTTCTTCCTGGCCGGGCGTGCGAACG---CTAATAAGAA  481
      |||||||| ||||||||||||||||| |||| |||||   ||||||| ||
seq2  TGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAGAACGCGTCTAATAACAA  482

seq1  TTGGTGCCGAATTCCGGGACGAGAGAAATCCGGGACGAGAAAAAATCCGG  531
      |||||||||||||||||||||||| ||                       
seq2  TTGGTGCCGAATTCCGGGACGAGAAAA-----------------------  509

seq1  GAAGAAAAAACCCGGGAGGAAACTCGGGACGGGAGTTTCACCGGCGCAAG  581
                         |||||||||           || ||||||||
seq2  -------------------AAACTCGGG-----------ACTGGCGCAAG  529

seq1  GAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCGCGGTAATAAAGGTT  631
      || ||||||||||||| ||||||||||||||| || || | |||||||||
seq2  GAGGATCCCTCATTCCGGAACCAGAACTGCGGATCACGTTTATAAAGGTT  579

seq1  CCCGTAAAGCAGACTGTTAAGAAGGATTCAACTGCATGAATTCAGAACTT  681
      |||||||  ||||||||| ||||||||||||||||  |||||||||||| 
seq2  CCCGTAACACAGACTGTTGAGAAGGATTCAACTGC-CGAATTCAGAACTC  628

seq1  TTCAGCTGGGGAACGA----------------------------------  697
       |||||||||||||||                                  
seq2  ATCAGCTGGGGAACGACGGTGATAAAGGTTCCCGTAAAGCAGACTGTTGA  678

seq1  ---------------------------------------------  697
                                                   
seq2  GAAGGATTCAACTGCCGAATTCAGAACTCATCAGCTGGGGAACGA  723