BAC Information

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BAC

Clone NameB6Ng01-094F11
Chromosome2 (Build37)
Map Location 149,566,881 - 149,567,985
singlet/doubletsinglet
Overlap geneEG667048
Upstream geneCstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10
Downstream geneC530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094F11.bB6Ng01-094F11.g
ACCDH905591DH905592
length1,2561,090
definitionDH905591|Mus musculus domesticus DNA, BAC clone: B6Ng01-094F11, 5' end.DH905592|Mus musculus domesticus DNA, BAC clone: B6Ng01-094F11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgaaaattaatatacaacatatccaaacttgtgggatacaat
gaaaatggcgctaagaggaaaattcacagcagtaagtgcctacataaaaa
agtagagaaatctcatacaagcaagctagaagcacacctaagtaaaagaa
gtaggcacatagaagaggactatagacagcaagaaattagcaaattgagg
cctgaaattcataaaataccaaccaagagagcaatttaaagaatcagtga
gaaaaaaaaaaagatttgttttttgcaaaagtcaacaagacagaaaacac
cttataactaagttatgttataagttaaaagttataaaagctaactaaag
atgagaatattaaaattaataaaaccagaaacaaaaatgaaatacaacaa
caaacacctaggaaatccaaagaagcataaggacatactttaaaaacctg
tactccacttaattggaaaacctaaaagaaatggataattttctcaatag
ataccacttaccaaagttaaatcaagatcatatataaataatttaagtac
acctataagccttagtgaaatagaagcagtcatcaaaataaaacctcccc
ctgcccccccaaaaaagccagacacttacagcacaaaattctaccagaca
ctcaaagaatagtgaacatcaatactcaaattattccacaaaataaaaac
aaaagggacattaaccaattcattttatgacgtcacaggtactctgttac
tgaaatcactttacaacttaaaaagaattttctttatgaatgtagaagaa
aaaaatatttaataaaatactcacaaaccaaatccaagaacacatacaaa
agattatccatgatcaagtaggctacatcccagagatgcagggatgattc
aacatatgaaaatcagtaaatataatccaccatattaaaaaaaaaaaacc
tgaaaagtaaaaagccacagggccatttcattagatgccaaaaagccttg
acaaatccaacagcccttcatgataaaaatactggagttcttgagggcac
aaaagaaatacctaaacataataaaaacaggtttattaacagcctataac
aaatgcagcttacagcaagcctatagcacagatcagttattggagggaac
taaagaaggtctactaaccagaccagctgacacctctggatcattcagag
tggatctgaactaagacaaattgaaaaaagagaattcgagaagtatctac
acctgg
gaattccataaagaataatgggaatacttttacattattattttgctgtg
ttaatctcattcagacccatatttaataatgaacagcttttgtgtcaccc
tttgatactgacaaagacctcaaaagcaagccccagaatactttgtggta
gagcagaaatctaaccggaaattctgacctatcagttctcagctttgtgt
gaaaggggatggcctggaccagaagcctgtgcctggattatatttctcca
ttctttttctttatccatgctaaatgctaatcccatcactaccaccaatc
aaagagaaatccaagatgtaagaaacaagaaacaaagtcttgctcaaaag
agacactggaggcaagactttgggtaccatactatgtataattcagcttt
ctgtctctgtaacacattccttaaaaatcaacttacaaaacaaaaggctt
tgtttgggacccagatggggggttcaatccatgactaatgtccctggtgc
tttaggcccttggtagcatatcatagagtcagcatgtggctgagcaacct
attcaccagggaataaaagagaaaggaaggctcactgtcctcttcaaggg
tacattcctaatgcactaaagctcctactaagctctacctcctaaaggct
ccattacctctcattgaaaccaaggttttctgaccacatgagcttttaag
gaacaatccaaatcgaagctacagcatcctgcacatggatcatcaccata
cttagatggaactattaggcacttaacacataaaagaatccaaataattc
tgctggaaatataccattccctgccaaactgattgcatactacaatctga
gtcttgggttactactgaggcatctgtctaggattttcaagagtggcatt
ctaatccatctgctgtctactcatggagcacagtttgggccacatgacct
gtctctaccttgtgagctatcttttgaactagacatgtgtgtacaatata
ttagcttagataagcttctcaaatattttatcatgagctcttttcattca
agaatgtttatatagcctgtgttaaagaataataaaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_149566881_149567985
seq2: B6Ng01-094F11.g_69_1158

seq1  GAATTCCATAAAGAATAATGGGAATACTTTTACATTATTATTTTGCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAGAATAATGGGAATACTTTTACATTATTATTTTGCTGTG  50

seq1  TTAATCTCATTCAGACCCATATTTAATAATGAACAGCTTTTGTGTCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCATTCAGACCCATATTTAATAATGAACAGCTTTTGTGTCACCC  100

seq1  TTTGATACTGACAAAGACCTCAAAAGCAAGCCCCAGAATACTTTGTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATACTGACAAAGACCTCAAAAGCAAGCCCCAGAATACTTTGTGGTA  150

seq1  GAGCAGAAATCTAACCGGAAATTCTGACCTATCAGTTCTCAGCTTTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAATCTAACCGGAAATTCTGACCTATCAGTTCTCAGCTTTGTGT  200

seq1  GAAAGGGGATGGCCTGGACCAGAAGCCTGTGCCTGGATTATATTTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGATGGCCTGGACCAGAAGCCTGTGCCTGGATTATATTTCTCCA  250

seq1  TTCTTTTTCTTTATCCATGCTAAATGCTAATCCCATCACTACCACCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTTTATCCATGCTAAATGCTAATCCCATCACTACCACCAATC  300

seq1  AAAGAGAAATCCAAGATGTAAGAAACAAGAAACAAAGTCTTGCTCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAATCCAAGATGTAAGAAACAAGAAACAAAGTCTTGCTCAAAAG  350

seq1  AGACACTGGAGGCAAGACTTTGGGTACCATACTATGTATAATTCAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGGAGGCAAGACTTTGGGTACCATACTATGTATAATTCAGCTTT  400

seq1  CTGTCTCTGTAACACATTCCTTAAAAATCAACTTACAAAACAAAAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGTAACACATTCCTTAAAAATCAACTTACAAAACAAAAGGCTT  450

seq1  TGTTTGGGACCCAGATGGGGGGTTCAATCCATGACTAATGTCCCTGGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGACCCAGATGGGGGGTTCAATCCATGACTAATGTCCCTGGTGC  500

seq1  TTTAGGCCCTTGGTAGCATATCATAGAGTCAGCATGTGGCTGAGCAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCCCTTGGTAGCATATCATAGAGTCAGCATGTGGCTGAGCAACCT  550

seq1  ATTCACCAGGGAATAAAAGAGAAAGGAAGGCTCACTGTCCTCTTCAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCAGGGAATAAAAGAGAAAGGAAGGCTCACTGTCCTCTTCAAGGG  600

seq1  TACATTCCTAATGCACTAAAGCTCCTACTAAGCTCTACCTCCTAAAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCTAATGCACTAAAGCTCCTACTAAGCTCTACCTCCTAAAGGCT  650

seq1  CCATTACCTCTCATTGAAACCAAGGTTTTCTGACCACATGAGCTTTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACCTCTCATTGAAACCAAGGTTTTCTGACCACATGAGCTTTTAAG  700

seq1  GAACAATCCAAATCGAAGCTACAGCATCCTGCACATGGATCATCACCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATCCAAATCGAAGCTACAGCATCCTGCACATGGATCATCACCATA  750

seq1  CTTAGATGGAACTATTAGGCACTTAACACATAAAAGAATCCAAATAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATGGAACTATTAGGCACTTAACACATAAAAGAATCCAAATAATTC  800

seq1  TGCTGGAAATATACCATTCCCTGCCAAACTGATTGCATACTACAATCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAAATATACCATTCCCTGCCAAACTGATTGCATACTACAATCTGA  850

seq1  GTCTTGGGTTACTACTGAGGCATCTGTCTAGGATTTTCAAGAGGTGGCAT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCTTGGGTTACTACTGAGGCATCTGTCTAGGATTTTCAAGA-GTGGCAT  899

seq1  TCTAATCCATCTGCTGTCTACCTCATGGAGCACAGTTTTGGCCACATGAC  950
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  TCTAATCCATCTGCTGTCTA-CTCATGGAGCACAGTTTGGGCCACATGAC  948

seq1  CTGTCTCTACCTTGTGAGCTATCTTTTGGAACTAAGACATTGGTGTGTAC  1000
      ||||||||||||||||||||||||||| ||||| ||||||  ||||||||
seq2  CTGTCTCTACCTTGTGAGCTATCTTTT-GAACT-AGACAT--GTGTGTAC  994

seq1  AATATATTTAGCTTAGATAAGGGCTTCTCAAATTATTTTTATTCATGAGC  1050
      |||||| |||||||||||||  |||||||||| ||||||   ||||||||
seq2  AATATA-TTAGCTTAGATAA--GCTTCTCAAA-TATTTT--ATCATGAGC  1038

seq1  TCTATTCATTCAAGAAATGTTTATATAGCCCTGTGTATACAGATATATAA  1100
      ||| |||||||||| ||||||||||||| ||||||| || |||   ||||
seq2  TCTTTTCATTCAAG-AATGTTTATATAG-CCTGTGT-TAAAGAATAATAA  1085

seq1  AATAG  1105
      |||||
seq2  AATAG  1090