BAC Information

Click to search

BAC

Clone NameB6Ng01-094H13
Chromosome2 (Build37)
Map Location 20,273,373 - 20,477,394
singlet/doubletdoublet
Overlap geneEtl4
Upstream geneMsrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094H13.bB6Ng01-094H13.g
ACCDH905685DH905686
length1,1311,140
definitionDH905685|Mus musculus domesticus DNA, BAC clone: B6Ng01-094H13, 5' end.DH905686|Mus musculus domesticus DNA, BAC clone: B6Ng01-094H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,476,237 - 20,477,394)(20,273,373 - 20,274,526)
sequence
gaattcaaatccccactccctttccattagaatcaagactctcctttatt
ctcagtcttggcgccaatttttatacatatctctttaaatgtttgctaat
ttgtttaactgtgtgtgctgtgtgtacactcggagatcagaggaggaatt
gttggaggatctctccttcacttccctgagttccagggagtaaactcagg
tcagcagatttgggggcaacagtctttatctgttgagtcatcttaacagc
catacatacatctactcatacatacaaatgtttctccatttaaaagatga
taataggcagaactgtgtgacattgctgacaggtagtgatgtgtgtgggg
attccaatattaacatttacacttttttatggatatgagtacactgtatt
tgtctgaagacacaccagaatgggccttgcattcaattacagatggttgt
gagctaccatgtggttgggttgctgggaattgaactcaggacctctggaa
gtacagtcagtattcttaaccactgagccatctctccagccctaacacat
ttgttttcagtgatccttggatatataccaggaaaagttcaattgtattg
ctttggattgaattggaatgcataaagaaatttgattactgtgtgtctgg
gtgccataaaaactctgtggtaggctggcaaagtggctcagcaggcaaag
acccttgtggccaagattggtggcctaaattcaatctctggtgcctacat
ggtggaagataacaaaggacttcccagaaggtatcctttgaattccacaa
gtccactatgtcacacctgtgctcgtctccataaatagatgatttaaaaa
aacttatatctatggtatttatacttggaggagaaaatattgtatttatc
ccacaatatacgaagcttggccaatttttttctaatgatttataaagctg
tatttggcttagagtcacctactcctctaggtgacagtattataatctct
ttaatgaaactgcttcatatggctttccttatttgcccatcacagtgtga
ccttcctcttttctctaaactgagtgttctggaattcttctgggtatctg
actacgcagcaatgcactgtccaataccgtt
gaattccagagaacataacaggggttgtgacaaaaaaaattacatggacc
atcactgaaatcatggggttgtgtggacacctagagggattgaaagtaca
ggaaagagtcgtaagttactaagactctggggtgttcccacatacaagag
tcatagcagaggtagacttaaatattaagccccatgtacaccaacctggg
aattttcttttaaaagccaggccagttattctagatactccatctctaac
agatgcatccatacccgtaggttgttgcaaatgaatactccacagaaaga
ttttctttgagaaaattctagttatgtgcattatatgtttctgtgtatct
gtcacccacatgtgatgcccatggaagccagaagtgggagtcaggtagat
cccctggcactggagctacaggtaggtggctgtgagatgcctcccatggt
tgttaggaacagaacctaggtcctctagaagaagagtgtttattcttaac
tgctaagccatctttacagcctccccccacaaccaatttttttttaaact
aaaaggatgtgagtcttgttttctgacctatgatatttaatgtcctgttt
aatgaaatttcaaatcattcttaactgaattaccatcacaattaaaattc
ccccaccggtttcaaagtatggcttcaggcatcaacaaagaaaggatcat
ttattgttctagataccctttctacacctggagacccagtaatggggagc
tgataagaatcattggcctttcttctaatctccttgtgattccataattg
cactgtataattattttctatcatttgttactgtttgtttacctcagcct
gtttctcatagtcattatccgattttgaatttgaacttgtttttagatga
ggactgatttgctaattccagttcaagcacatacatgccatccttttttt
atgatgagacctctatttacattttagtggagactgagaggcatctgaat
atttaagatgctacactaggaatcctctgtttctatttatgccctactag
acagttatttgcaaaggtttttgatgctatacccggaagtcctcaccatc
attattgaaatggacataatagagaaatagaatgtcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20476237_20477394
seq2: B6Ng01-094H13.b_43_1173 (reverse)

seq1  AACGGTATTTTGTGACAGTGCATATGCTTGCCAGTAGTCAGTTAACCCAG  50
      |||||||||    |||||||||| ||| |||  |||||||| | ||||||
seq2  AACGGTATT---GGACAGTGCAT-TGC-TGC--GTAGTCAGAT-ACCCAG  42

seq1  AAAGAATCACGAGAAACAACTCAGTTTAGAGAAAAAAGAGGAAGGTCACA  100
       ||||||  | ||||   |||||||||||||  |||||||||||||||| 
seq2  -AAGAAT-TCCAGAA--CACTCAGTTTAGAG--AAAAGAGGAAGGTCAC-  85

seq1  ACTGTGATGGGCAAATTAAGGGAAAGCCATAATTGAAGCAGTTTCATTAA  150
      ||||||||||||||||  | |||||||||||  |||||||||||||||||
seq2  ACTGTGATGGGCAAAT--AAGGAAAGCCATA--TGAAGCAGTTTCATTAA  131

seq1  AGAGA-TATAATTACTGTCACCCTAGGAGGAGGTAGGTGACTTCTAAGCC  199
      ||||| ||||| |||||||| |||| ||||| ||||||||| ||||||||
seq2  AGAGATTATAA-TACTGTCA-CCTA-GAGGA-GTAGGTGAC-TCTAAGCC  176

seq1  AAATACAGCTTTTATAAATCATTAGAAAAAAATTGGCCAAGCTTCGTATA  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGC-TTTATAAATCATTAGAAAAAAATTGGCCAAGCTTCGTATA  225

seq1  TTGTGGGATAAATACAATATTTTCTTCCTCCAAGTATTAAATACCATAGA  299
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  TTGTGGGATAAATACAATATTTTC-TCCTCCAAGTA-TAAATACCATAGA  273

seq1  TATAAGTTTTTTTAAATCATCTATTTTATGGAGACGAGCACAGGTGTGAC  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATAAGTTTTTTTAAATCATCTA-TTTATGGAGACGAGCACAGGTGTGAC  322

seq1  ATAGTGGACTTGTGGAATTCAAAGGATACCTTCTGGGAAGTCCTTTGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGACTTGTGGAATTCAAAGGATACCTTCTGGGAAGTCCTTTGTTA  372

seq1  TCTTCCACCATGTAGGCACCAGAGATTGAATTTAGGCCACCAATCTTGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACCATGTAGGCACCAGAGATTGAATTTAGGCCACCAATCTTGGC  422

seq1  CACAAGGGTCTTTGCCTGCTGAGCCACTTTGCCAGCCTACCACAGAGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGTCTTTGCCTGCTGAGCCACTTTGCCAGCCTACCACAGAGTTT  472

seq1  TTATGGCACCCAGACACACAGTAATCAAATTTCTTTATGCATTCCAATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCACCCAGACACACAGTAATCAAATTTCTTTATGCATTCCAATTC  522

seq1  AATCCAAAGCAATACAATTGAACTTTTCCTGGTATATATCCAAGGATCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAAGCAATACAATTGAACTTTTCCTGGTATATATCCAAGGATCAC  572

seq1  TGAAAACAAATGTGTTAGGGCTGGAGAGATGGCTCAGTGGTTAAGAATAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAAATGTGTTAGGGCTGGAGAGATGGCTCAGTGGTTAAGAATAC  622

seq1  TGACTGTACTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCCAACCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTACTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCCAACCACA  672

seq1  TGGTAGCTCACAACCATCTGTAATTGAATGCAAGGCCCATTCTGGTGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTCACAACCATCTGTAATTGAATGCAAGGCCCATTCTGGTGTGT  722

seq1  CTTCAGACAAATACAGTGTACTCATATCCATAAAAAAGTGTAAATGTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACAAATACAGTGTACTCATATCCATAAAAAAGTGTAAATGTTAA  772

seq1  TATTGGAATCCCCACACACATCACTACCTGTCAGCAATGTCACACAGTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAATCCCCACACACATCACTACCTGTCAGCAATGTCACACAGTTC  822

seq1  TGCCTATTATCATCTTTTAAATGGAGAAACATTTGTATGTATGAGTAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATTATCATCTTTTAAATGGAGAAACATTTGTATGTATGAGTAGAT  872

seq1  GTATGTATGGCTGTTAAGATGACTCAACAGATAAAGACTGTTGCCCCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGGCTGTTAAGATGACTCAACAGATAAAGACTGTTGCCCCCAA  922

seq1  ATCTGCTGACCTGAGTTTACTCCCTGGAACTCAGGGAAGTGAAGGAGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGACCTGAGTTTACTCCCTGGAACTCAGGGAAGTGAAGGAGAGA  972

seq1  TCCTCCAACAATTCCTCCTCTGATCTCCGAGTGTACACACAGCACACACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAACAATTCCTCCTCTGATCTCCGAGTGTACACACAGCACACACA  1022

seq1  GTTAAACAAATTAGCAAACATTTAAAGAGATATGTATAAAAATTGGCGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACAAATTAGCAAACATTTAAAGAGATATGTATAAAAATTGGCGCC  1072

seq1  AAGACTGAGAATAAAGGAGAGTCTTGATTCTAATGGAAAGGGAGTGGGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGAGAATAAAGGAGAGTCTTGATTCTAATGGAAAGGGAGTGGGGA  1122

seq1  TTTGAATTC  1158
      |||||||||
seq2  TTTGAATTC  1131

seq1: chr2_20273373_20274526
seq2: B6Ng01-094H13.g_66_1205

seq1  GAATTCCAGAGAACATAACAGGGGTTGTGACAAAAAAAATTACATGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAACATAACAGGGGTTGTGACAAAAAAAATTACATGGACC  50

seq1  ATCACTGAAATCATGGGGTTGTGTGGACACCTAGAGGGATTGAAAGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGAAATCATGGGGTTGTGTGGACACCTAGAGGGATTGAAAGTACA  100

seq1  GGAAAGAGTCGTAAGTTACTAAGACTCTGGGGTGTTCCCACATACAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGTCGTAAGTTACTAAGACTCTGGGGTGTTCCCACATACAAGAG  150

seq1  TCATAGCAGAGGTAGACTTAAATATTAAGCCCCATGTACACCAACCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCAGAGGTAGACTTAAATATTAAGCCCCATGTACACCAACCTGGG  200

seq1  AATTTTCTTTTAAAAGCCAGGCCAGTTATTCTAGATACTCCATCTCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTTTAAAAGCCAGGCCAGTTATTCTAGATACTCCATCTCTAAC  250

seq1  AGATGCATCCATACCCGTAGGTTGTTGCAAATGAATACTCCACAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCATCCATACCCGTAGGTTGTTGCAAATGAATACTCCACAGAAAGA  300

seq1  TTTTCTTTGAGAAAATTCTAGTTATGTGCATTATATGTTTCTGTGTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGAGAAAATTCTAGTTATGTGCATTATATGTTTCTGTGTATCT  350

seq1  GTCACCCACATGTGATGCCCATGGAAGCCAGAAGTGGGAGTCAGGTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCACATGTGATGCCCATGGAAGCCAGAAGTGGGAGTCAGGTAGAT  400

seq1  CCCCTGGCACTGGAGCTACAGGTAGGTGGCTGTGAGATGCCTCCCATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGCACTGGAGCTACAGGTAGGTGGCTGTGAGATGCCTCCCATGGT  450

seq1  TGTTAGGAACAGAACCTAGGTCCTCTAGAAGAAGAGTGTTTATTCTTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGAACAGAACCTAGGTCCTCTAGAAGAAGAGTGTTTATTCTTAAC  500

seq1  TGCTAAGCCATCTTTACAGCCTCCCCCCACAACCAATTTTTTTTTAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGCCATCTTTACAGCCTCCCCCCACAACCAATTTTTTTTTAAACT  550

seq1  AAAAGGATGTGAGTCTTGTTTTCTGACCTATGATATTTAATGTCCTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATGTGAGTCTTGTTTTCTGACCTATGATATTTAATGTCCTGTTT  600

seq1  AATGAAATTTCAAATCATTCTTAACTGAATTACCATCACAATTAAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTTCAAATCATTCTTAACTGAATTACCATCACAATTAAAATTC  650

seq1  CCCCACCGGTTTCAAAGTATGGCTTCAGGCATCAACAAAGAAAGGATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCGGTTTCAAAGTATGGCTTCAGGCATCAACAAAGAAAGGATCAT  700

seq1  TTATTGTTCTAGATACCCTTTCTACACCTGGAGACCCAGTAATGGGGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTCTAGATACCCTTTCTACACCTGGAGACCCAGTAATGGGGAGC  750

seq1  TGATAAGAATCATTGGCCTTTCTTCTAATCTCCTTGTGATTCCATAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGAATCATTGGCCTTTCTTCTAATCTCCTTGTGATTCCATAATTG  800

seq1  CACTGTATAATTATTTTCTATCATTTGTTACTGTTTGTTTACCTCAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTATAATTATTTTCTATCATTTGTTACTGTTTGTTTACCTCAGCCT  850

seq1  GTTTCTCATAGTCATTATCCGATTTTGAATTTGAACTTGTTTTTAAGATG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTTCTCATAGTCATTATCCGATTTTGAATTTGAACTTGTTTTT-AGATG  899

seq1  AGGACTGATTTGCTAATTCCAGTTCAAGCACAATACAATGCCATCC-TTT  949
      ||||||||||||||||||||||||||||||| |||| ||||||||| |||
seq2  AGGACTGATTTGCTAATTCCAGTTCAAGCAC-ATAC-ATGCCATCCTTTT  947

seq1  TTTATGATGAGACCTCTATTTACATTTTAGT-GAGACCTGAAGAGGCATC  998
      ||||||||||||||||||||||||||||||| |||| ||| |||||||||
seq2  TTTATGATGAGACCTCTATTTACATTTTAGTGGAGA-CTG-AGAGGCATC  995

seq1  TTGAATATTTAAAGATGCTACACTAGGAAAATCTCTG-TTCTATTTATGC  1047
       ||||||||| |||||||||||||||| ||  ||||| ||||||||||||
seq2  -TGAATATTT-AAGATGCTACACTAGG-AATCCTCTGTTTCTATTTATGC  1042

seq1  CCTACTTAGGACAGTTATTTTGCAAAGGTTTTTTGAATAGCTATAACCAG  1097
      ||||||   |||||||| |||||||||| |||||||   |||||| || |
seq2  CCTACT--AGACAGTTA-TTTGCAAAGG-TTTTTGA--TGCTATACCCGG  1086

seq1  AAGAATCATCAACAAATCATAATGGAAATTGTACATAATAGAGAA--TGA  1145
      |||  || ||| |  ||||| || |||| || |||||||||||||   ||
seq2  AAG--TCCTCACC--ATCATTATTGAAA-TGGACATAATAGAGAAATAGA  1131

seq1  ATGTCTTCC  1154
      |||||||||
seq2  ATGTCTTCC  1140