BAC Information

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BAC

Clone NameB6Ng01-094L17
Chromosome2 (Build37)
Map Location 138,844,451 - 138,949,665
singlet/doubletdoublet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094L17.bB6Ng01-094L17.g
ACCDH905872DH905873
length1,1131,085
definitionDH905872|Mus musculus domesticus DNA, BAC clone: B6Ng01-094L17, 5' end.DH905873|Mus musculus domesticus DNA, BAC clone: B6Ng01-094L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,844,451 - 138,845,575)(138,948,566 - 138,949,665)
sequence
gaattcaataacatgacattaaacatcttgatatcataaagtcacccagc
aaagccattaataattcttctcataggctttcaaacattacttagttcta
agttctcttggccagtttatattatattgatctcagtttaaaagaacttt
accctcaattatctatcgcatcaacacagtttactctctgaagcagccat
agattactacattaacaaaaggtcaatgagctacctatatttatatgtgt
acttcactatatataattatattctgtcattaaatatatattcattttta
actcccatttttctgggtaggaacttcattttacacttaacactactatg
gtagaaacagtataaaggtttactttctgcaaagagtgaattcacattgc
ttttcaggggagggacagcaatccaaatagaagccccatctagccaggag
tccccattgtctcaggcttccacccagctagttctcaaagggaaaacaga
gatgacaactatgcacaaagggaacacgatgccttagtgaaaccattttc
ccactgcgactgctcaggctgagagtttgattttaagaatacagtatctc
aggatgatgcaggccagggaggcaaatgtcacagtaaataatgtatacta
tcccccagtacaccgagcaccaagttcagcctcaaggcacttttctctta
caatgctcaagaggaagttctcagttcagaacagccactttacaagatag
attggggagtacttctattactgctgactgagttcttgcattccttgaca
gtgccagactggagatgccctttggggctcagggttggtacagaatacag
gtattattagttttggagttatcctgtatcaccctgattctctgggacag
aactgtaggagaactctgtgtgtgtgtgtgttcatgtgtgtgccataagt
gtctcaaacagagatcatatctatatatctatatatataatataaataat
aaatatatatctcctgttggtgaacactttataagccttctctgtttata
tgtattgcttctgtggctggatgcatgggcttttattctatttaggttgc
caaggtaggcgtt
gaattcatccaactgcaataatcttgagataacaaatggaaggggaagta
gagagattgatctttcatatgtcattagtagaccatgggaagtttctctg
aggttcatgaatgagccaagccattaagttataaggtgtttatagttaaa
atgtggtgagaactatgctagtcactggagctggaaacattagacaacgt
ttgcatagataaaactatgatcttcttacatggcagatggagtttgtaat
gaggagattgtgaaagtttggaggagaagaacattaaccaaagatttata
ataagatcattgtatataggagaacacttggcagaatgatatgatggctg
tatctggtatagtttctccaaaactatcccccattgccaggaaggaagag
cacagaagtttgccttaagatctaagatgttcctttatgatggattgata
aaattcaaggtgattacttcagtgatcaacaatggtgcctcaaaaattca
agcagaaagcagagtgaagtgacaatagaaaagcagaaataacagatatc
tgtgagacaggggaaacaagccctacttgtggtcacgctagaccttagtg
ggaactaactttgggtacttagtattgtgatgggaaatattgcttaaagt
ctagtaactaaggtggtttcagatgaaataactcagacacaaactcagtg
atgaccctggaaagaaaaaaaaaaaaaacatgggctagacataaataaat
tgtaactgttctatgtcagtgagttgatggatgaataaatctgtttcatt
gaacttcttagggcattaagtttaaggtatcctggacatatatctctacg
acctcatagtcaatcttgaattcattttctgctaattaaaatcattttat
gagacttgctgtatgactcatgcctgcatcctagtactttggatgctgca
gcatagggatgctgtgagtttgaagatagtgtcaaatcaggtaaagagta
tgatcctgtctcagtaaagagatgttcccctcccccacaatgcagcaagt
aacaaggcagaagccaaatcttcaattctcaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138844451_138845575
seq2: B6Ng01-094L17.b_47_1159

seq1  GAATTCAATAACATGACATTAAACATCTTGATATCATAAAGTCACCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAACATGACATTAAACATCTTGATATCATAAAGTCACCCAGC  50

seq1  AAAGCCATTAATAATTCTTCTCATAGGCTTTCAAACATTACTTAGTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTAATAATTCTTCTCATAGGCTTTCAAACATTACTTAGTTCTA  100

seq1  AGTTCTCTTGGCCAGTTTATATTATATTGATCTCAGTTTAAAAGAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTTGGCCAGTTTATATTATATTGATCTCAGTTTAAAAGAACTTT  150

seq1  ACCCTCAATTATCTATCGCATCAACACAGTTTACTCTCTGAAGCAGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAATTATCTATCGCATCAACACAGTTTACTCTCTGAAGCAGCCAT  200

seq1  AGATTACTACATTAACAAAAGGTCAATGAGCTACCTATATTTATATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTACATTAACAAAAGGTCAATGAGCTACCTATATTTATATGTGT  250

seq1  ACTTCACTATATATAATTATATTCTGTCATTAAATATATATTCATTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTATATATAATTATATTCTGTCATTAAATATATATTCATTTTTA  300

seq1  ACTCCCATTTTTCTGGGTAGGAACTTCATTTTACACTTAACACTACTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCATTTTTCTGGGTAGGAACTTCATTTTACACTTAACACTACTATG  350

seq1  GTAGAAACAGTATAAAGGTTTACTTTCTGCAAAGAGTGAATTCACATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACAGTATAAAGGTTTACTTTCTGCAAAGAGTGAATTCACATTGC  400

seq1  TTTTCAGGGGAGGGACAGCAATCCAAATAGAAGCCCCATCTAGCCAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGGGAGGGACAGCAATCCAAATAGAAGCCCCATCTAGCCAGGAG  450

seq1  TCCCCATTGTCTCAGGCTTCCACCCAGCTAGTTCTCAAAGGGAAAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTGTCTCAGGCTTCCACCCAGCTAGTTCTCAAAGGGAAAACAGA  500

seq1  GATGACAACTATGCACAAAGGGAACACGATGCCTTAGTGAAACCATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAACTATGCACAAAGGGAACACGATGCCTTAGTGAAACCATTTTC  550

seq1  CCACTGCGACTGCTCAGGCTGAGAGTTTGATTTTAAGAATACAGTATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCGACTGCTCAGGCTGAGAGTTTGATTTTAAGAATACAGTATCTC  600

seq1  AGGATGATGCAGGCCAGGGAGGCAAATGTCACAGTAAATAATGTATACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATGCAGGCCAGGGAGGCAAATGTCACAGTAAATAATGTATACTA  650

seq1  TCCCCCAGTACACCGAGCACCAAGTTCAGCCTCAAGGCACTTTTCTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGTACACCGAGCACCAAGTTCAGCCTCAAGGCACTTTTCTCTTA  700

seq1  CAATGCTCAAGAGGAAGTTCTCAGTTCAGAACAGCCACTTTACAAGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCAAGAGGAAGTTCTCAGTTCAGAACAGCCACTTTACAAGATAG  750

seq1  ATTGGGGAGTACTTCTATTACTGCTGACTGAGTTCTTGCATTCCTTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGAGTACTTCTATTACTGCTGACTGAGTTCTTGCATTCCTTGACA  800

seq1  GTGCCAGACTGGAGATGCCCTTTGGGGCTCAGGGTTGGTACAGAATACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGACTGGAGATGCCCTTTGGGGCTCAGGGTTGGTACAGAATACAG  850

seq1  GTATTATTAGTTTTGGAGTTATCCTGGTATCACCCTGATTCTCTGGGACA  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTATTATTAGTTTTGGAGTTATCCT-GTATCACCCTGATTCTCTGGGACA  899

seq1  GAACTGTAGGGAGAAACTCTGTGTGTGTGTGTGTTCATGTGTGTGCCATA  950
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  GAACTGTA-GGAG-AACTCTGTGTGTGTGTGTGTTCATGTGTGTGCCATA  947

seq1  AGGTGTCCTCAAACCAGAGATCATATCTATATATCTATATATAATTAATA  1000
      | |||| |||||| |||||||||||||||||||||||||||||  |||||
seq2  A-GTGT-CTCAAA-CAGAGATCATATCTATATATCTATATATA--TAATA  992

seq1  ATTAAATAATATATATTATTATCTCTTGTTTGTGAACACTTTAT-AGCCT  1049
        ||||||||| ||||   |||||| |||| ||||||||||||| |||||
seq2  --TAAATAATAAATAT--ATATCTCCTGTTGGTGAACACTTTATAAGCCT  1038

seq1  TCTCTG-TTATATGTAATTGCTTCTGT-GCTTGATTTGCAT-GGCTTTCT  1096
      |||||| |||||||| ||||||||||| ||| ||  ||||| ||||||  
seq2  TCTCTGTTTATATGT-ATTGCTTCTGTGGCTGGA--TGCATGGGCTTTTA  1085

seq1  ATCTATTTCTAGTTG-CAAGGTAAGGCGTT  1125
       |||||||   |||| |||||| |||||||
seq2  TTCTATTT-AGGTTGCCAAGGT-AGGCGTT  1113

seq1: chr2_138948566_138949665
seq2: B6Ng01-094L17.g_68_1152 (reverse)

seq1  AATTTGGAAGAATGGAAGATTTTTGCTTCTGTGCTTTTGTTTACTTGCTG  50
      ||||||  ||||| ||||| ||| |||||  ||| ||   ||||||||||
seq2  AATTTG--AGAATTGAAGA-TTTGGCTTC--TGCCTT--GTTACTTGCTG  43

seq1  CCATTGTTGGGGGGGGGGGAACATCCTCTTTCTTGAGACAGGATCATACT  100
       ||||||  ||||| ||||||||| ||||||  |||||||||||||||||
seq2  -CATTGT--GGGGGAGGGGAACAT-CTCTTTACTGAGACAGGATCATACT  89

seq1  CTTTTACCCTGATTTGACACTATCTTCAAACTCACAGCATCCCTTATGCT  150
      ||||   |||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTT--ACCTGATTTGACACTATCTTCAAACTCACAGCATCCC-TATGCT  136

seq1  GCAGCATCCAAAGTACTAGGATTGCAGGCATGAGTCATACAGCAAGTCTC  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAGCATCCAAAGTACTAGGA-TGCAGGCATGAGTCATACAGCAAGTCTC  185

seq1  ATAAAATGATTTTAATTAGCAGAAAATGAATTCAAGATTGACTATGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGATTTTAATTAGCAGAAAATGAATTCAAGATTGACTATGAGGT  235

seq1  CGTAGAGATATATGTCCAGGATACCTTTAAACTTAATGCCCTAAGAAGTT  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CGTAGAGATATATGTCCAGGATACC-TTAAACTTAATGCCCTAAGAAGTT  284

seq1  CAATGAAACAGATTTATTCATCCATCAACTCACTGACATAGAACAGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAACAGATTTATTCATCCATCAACTCACTGACATAGAACAGTTAC  334

seq1  AATTTATTTATGTCTAGCCCATG-TTTTTTTTTTTTTCTTTCCAGGGTCA  399
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATTTATTTATGTCTAGCCCATGTTTTTTTTTTTTTTCTTTCCAGGGTCA  384

seq1  TCACTGAGTTTGTGTCTGAGTTATTTCATCTGAAACCACCTTAGTTACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGTTTGTGTCTGAGTTATTTCATCTGAAACCACCTTAGTTACTA  434

seq1  GACTTTAAGCAATATTTCCCATCACAATACTAAGTACCCAAAGTTAGTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAAGCAATATTTCCCATCACAATACTAAGTACCCAAAGTTAGTTC  484

seq1  CCACTAAGGTCTAGCGTGACCACAAGTAGGGCTTGTTTCCCCTGTCTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGGTCTAGCGTGACCACAAGTAGGGCTTGTTTCCCCTGTCTCAC  534

seq1  AGATATCTGTTATTTCTGCTTTTCTATTGTCACTTCACTCTGCTTTCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCTGTTATTTCTGCTTTTCTATTGTCACTTCACTCTGCTTTCTGC  584

seq1  TTGAATTTTTGAGGCACCATTGTTGATCACTGAAGTAATCACCTTGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTTTGAGGCACCATTGTTGATCACTGAAGTAATCACCTTGAATT  634

seq1  TTATCAATCCATCATAAAGGAACATCTTAGATCTTAAGGCAAACTTCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATCCATCATAAAGGAACATCTTAGATCTTAAGGCAAACTTCTGT  684

seq1  GCTCTTCCTTCCTGGCAATGGGGGATAGTTTTGGAGAAACTATACCAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCTTCCTGGCAATGGGGGATAGTTTTGGAGAAACTATACCAGAT  734

seq1  ACAGCCATCATATCATTCTGCCAAGTGTTCTCCTATATACAATGATCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATCATATCATTCTGCCAAGTGTTCTCCTATATACAATGATCTTA  784

seq1  TTATAAATCTTTGGTTAATGTTCTTCTCCTCCAAACTTTCACAATCTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATCTTTGGTTAATGTTCTTCTCCTCCAAACTTTCACAATCTCCT  834

seq1  CATTACAAACTCCATCTGCCATGTAAGAAGATCATAGTTTTATCTATGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAACTCCATCTGCCATGTAAGAAGATCATAGTTTTATCTATGCA  884

seq1  AACGTTGTCTAATGTTTCCAGCTCCAGTGACTAGCATAGTTCTCACCACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTGTCTAATGTTTCCAGCTCCAGTGACTAGCATAGTTCTCACCACA  934

seq1  TTTTAACTATAAACACCTTATAACTTAATGGCTTGGCTCATTCATGAACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTATAAACACCTTATAACTTAATGGCTTGGCTCATTCATGAACC  984

seq1  TCAGAGAAACTTCCCATGGTCTACTAATGACATATGAAAGATCAATCTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAACTTCCCATGGTCTACTAATGACATATGAAAGATCAATCTCT  1034

seq1  CTACTTCCCCTTCCATTTGTTATCTCAAGATTATTGCAGTTGGATGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCCCTTCCATTTGTTATCTCAAGATTATTGCAGTTGGATGAATT  1084

seq1  C  1100
      |
seq2  C  1085