BAC Information

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BAC

Clone NameB6Ng01-095A20
Chromosome2 (Build37)
Map Location 173,874,152 - 173,875,269
singlet/doubletsinglet
Overlap genenone
Upstream geneCtcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901
Downstream geneStx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095A20.bB6Ng01-095A20.g
ACCDH906095DH906096
length7481,058
definitionDH906095|Mus musculus domesticus DNA, BAC clone: B6Ng01-095A20, 5' end.DH906096|Mus musculus domesticus DNA, BAC clone: B6Ng01-095A20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctaatggcctaaaagcacctaaagaaatgttcatcagccttag
tcatcagggaaatgcaaatcaaaagaaccctgaaattctacctcacacca
ttcagaatgattaagataaaaaaaaatcagatgacagtaaatactgggga
ggatgtggagaaagaggaacattcttccattgctggtgggattgcaagct
ggtacaactgctctggaaatcagtctggtggttcctcagaaaattggaca
tagtactacctgaagacacagctataccactcctgggcatatacccaaaa
gatgctataacatataacaaggacacatgctccactatgttcatagcagc
cttatttataatagtcagaagctggaaacaacccagatgtccctcaacag
aggaacggatacaaaaactgtggtacatttatacaatggaatactactca
gcctttaaaaacaatgacttcatgaaattcacaggcaaatgtatggaact
agaaaatatcatcctgagtgaggtaacccagtcacaaaagaacaaatgtg
gtaatgtactcactgataagtagatataaggaaaaaagcacagaataccc
atgatacaagtcacagaccatgtgaagctcaagaagaaggaaggccaata
tgtggatgtttccgtcctatttggaagggagaacaaaaataaatcgtggg
aggtagattgaggggaaagacctgggagggagagaggaggggagagga
gaattccccacccccacccctgcaagggcaagcacagagcaccagctgtg
ggcagatgagactgtacaggcaaagcccctcccaccctgggagttcttgt
tgcaatgagactcctttggatttttctcagtactctctagagcaggagag
ggcagatgcttgggaggagacagcatagatcacttgctcagaggtccaga
ggtacaggaggatgaggtaagcagcaacagaggctgctgagaggctgtgg
gagcatggtcaagccaagggagtagataacaatttccagtttaaacagtg
acagaagcttggaggcaaaaacactcatgcatttacagggcagggtccta
gctagcgggaaacagaggcaagagaagaagggggctggggagtctgtttt
atttcaaattataaacaagttccgtatgttgattctcaaggaaggcagcc
ttggctccaaagaggctgacagttatttgttgatcttatggaaactatat
catcaaatatttcaccattgcttgagttcttgggagaaacaatatctcat
gagttcctccagcatacaatatcatcaggacagaaagctggaggaattta
tgaggaggcaaaacttccagagacccaggcatccttggataggatgggct
tcaccacttctgtgagttgggtgttcccagcagcaagacccagagcagcc
acaagcttgtcccactgtcaccattgataaggctgcttcttgcagaggct
cctgccattgcccttgctagtgtgatggagcccaggctcagaaccctgcc
tctgaagtagacgtatccaaagggagtgatagcatggcctcccagatgag
gtgtctgtagatatcacaggtcacacgctcactggtagcacgccctgcag
ctcctctcatgacacatgctctagatgactcttgcatcttcaggatcttc
agatagatcagttccctcactagtctcttaagggacatcacagctaagtt
acaggcacctgattcagcaaactggacaggactaggagtctcaggtcact
tgatgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173874152_173875269
seq2: B6Ng01-095A20.g_66_1123 (reverse)

seq1  CTTCATCAAAGTGACCTGAGACATCCTTTGAGTGCCTGGTGCCATGTCTC  50
      ||||||| |||||||||||||| ||||   ||| ||||   ||| || | 
seq2  CTTCATC-AAGTGACCTGAGAC-TCCT---AGT-CCTG--TCCA-GTTT-  40

seq1  GCCTGAACTCAGGGTGTGCCTGTGTAACCTTTATGAGCTGTGTGATGCTC  100
        ||||| ||||   |||||  ||||||     | |||  |||||||  |
seq2  -GCTGAA-TCAG---GTGCC--TGTAAC-----TTAGC--TGTGATGTCC  76

seq1  CTGTATAAAGAGGACTAGTTGAGGGGAGACCCTGGGAATTCTTACTGAGA  150
      |    | |||| |||||| |||||| |    |||     |||  |||   
seq2  C----TTAAGA-GACTAG-TGAGGGAA----CTG----ATCTATCTG---  109

seq1  AGGATTCCCTTAGAAAGATGCAGGGTGTCATTCTAGAGGGCATGGTGTCA  200
      | |||  |||    ||||||||  | |||| ||||||  |||| ||||| 
seq2  AAGAT--CCT---GAAGATGCA-AGAGTCA-TCTAGA--GCAT-GTGTC-  148

seq1  ATGAGAGGAGCTGCAGGGCGCTGCTACCCAGTGAGCGTGTGGACCTGGTG  250
      |||||||||||||||||||| ||||| ||||||||||||| ||||| |||
seq2  ATGAGAGGAGCTGCAGGGCG-TGCTA-CCAGTGAGCGTGT-GACCT-GTG  194

seq1  ATATCCTACAGACACCTCATCTGGGAGGCCATGCTTATCACTTCCCTTTG  300
      |||| ||||||||||||||||||||||||||||| |||||| ||||||||
seq2  ATAT-CTACAGACACCTCATCTGGGAGGCCATGC-TATCAC-TCCCTTTG  241

seq1  GATACGTCTACTTCAGAGGCCAGGGTTCTGAGCCTGGGCTCCATCACACT  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATACGTCTACTTCAGAGG-CAGGGTTCTGAGCCTGGGCTCCATCACACT  290

seq1  AGCAAGGGCAATGGCAGGAGCCTCTGCAAGAAGCAGCCTTATCAATGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGGCAATGGCAGGAGCCTCTGCAAGAAGCAGCCTTATCAATGGTG  340

seq1  ACAGTGGGACAAGCTTGTGGCTGCTCTGGGTCTTGCTGCTGGGAACACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGACAAGCTTGTGGCTGCTCTGGGTCTTGCTGCTGGGAACACCC  390

seq1  AACTCACAGAAGTGGTGAAGCCCATCCTATCCAAGGATGCCTGGGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGAAGTGGTGAAGCCCATCCTATCCAAGGATGCCTGGGTCTCT  440

seq1  GGAAGTTTTGCCTCCTCATAAATTCCTCCAGCTTTCTGTCCTGATGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTTGCCTCCTCATAAATTCCTCCAGCTTTCTGTCCTGATGATAT  490

seq1  TGTATGCTGGAGGAACTCATGAGATATTGTTTCTCCCAAGAACTCAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTGGAGGAACTCATGAGATATTGTTTCTCCCAAGAACTCAAGCA  540

seq1  ATGGTGAAATATTTGATGATATAGTTTCCATAAGATCAACAAATAACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAAATATTTGATGATATAGTTTCCATAAGATCAACAAATAACTGT  590

seq1  CAGCCTCTTTGGAGCCAAGGCTGCCTTCCTTGAGAATCAACATACGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTTTGGAGCCAAGGCTGCCTTCCTTGAGAATCAACATACGGAAC  640

seq1  TTGTTTATAATTTGAAATAAAACAGACTCCCCAGCCCCCTTCTTCTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATAATTTGAAATAAAACAGACTCCCCAGCCCCCTTCTTCTCTTG  690

seq1  CCTCTGTTTCCCGCTAGCTAGGACCCTGCCCTGTAAATGCATGAGTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTCCCGCTAGCTAGGACCCTGCCCTGTAAATGCATGAGTGTTT  740

seq1  TTGCCTCCAAGCTTCTGTCACTGTTTAAACTGGAAATTGTTATCTACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCCAAGCTTCTGTCACTGTTTAAACTGGAAATTGTTATCTACTCC  790

seq1  CTTGGCTTGACCATGCTCCCACAGCCTCTCAGCAGCCTCTGTTGCTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTGACCATGCTCCCACAGCCTCTCAGCAGCCTCTGTTGCTGCTT  840

seq1  ACCTCATCCTCCTGTACCTCTGGACCTCTGAGCAAGTGATCTATGCTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCCTCCTGTACCTCTGGACCTCTGAGCAAGTGATCTATGCTGTC  890

seq1  TCCTCCCAAGCATCTGCCCTCTCCTGCTCTAGAGAGTACTGAGAAAAATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCAAGCATCTGCCCTCTCCTGCTCTAGAGAGTACTGAGAAAAATC  940

seq1  CAAAGGAGTCTCATTGCAACAAGAACTCCCAGGGTGGGAGGGGCTTTGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGTCTCATTGCAACAAGAACTCCCAGGGTGGGAGGGGCTTTGCC  990

seq1  TGTACAGTCTCATCTGCCCACAGCTGGTGCTCTGTGCTTGCCCTTGCAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTCTCATCTGCCCACAGCTGGTGCTCTGTGCTTGCCCTTGCAGG  1040

seq1  GGTGGGGGTGGGGAATTC  1118
      ||||||||||||||||||
seq2  GGTGGGGGTGGGGAATTC  1058