BAC Information

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BAC

Clone NameB6Ng01-095B08
Chromosome2 (Build37)
Map Location 44,289,439 - 44,420,582
singlet/doubletdoublet
Overlap geneGtdc1
Upstream geneLOC100041245, Kynu, Arhgap15
Downstream geneZeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095B08.bB6Ng01-095B08.g
ACCDH906117DH906118
length1,1451,194
definitionDH906117|Mus musculus domesticus DNA, BAC clone: B6Ng01-095B08, 5' end.DH906118|Mus musculus domesticus DNA, BAC clone: B6Ng01-095B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,419,430 - 44,420,582)(44,289,439 - 44,290,658)
sequence
gaattctttctttctgccgacacgatggcagccaaactgcagcttcaaac
actcacacttggctgagtttctacctgggttgccaggttatcatcggagc
cttcttgtgtcctcaaagggccacggggcctagaaagaggatcagaatgc
tactgaactaattgggcagccatctcaaagctgctgtaggcaaagggctg
ctgtagcacttttcttttagcaaattaatgactctctggcaaaggagtgt
ttaagtgaaggcattaataagggctctggcaggtattcccatgattctca
gagttccatttgcattgaattaatcttaaagaaacttgcaagataaacag
ctggaattcggacaaacatggcagattcagtgagtgaagtcctctcatcc
ataaaatgaacacgagatacttgttttaaaattttttccctgtgggtaaa
aatagaaaaatcagaatgcttataacaaaacataatttggtacaaaattc
ttcaaaatacttgtatccaactataaatatattcttcttgagataagtca
cttacgattcttgctctgtttgttggtgtaaagatgttttaaatggctgg
attgtaaaatacatttttaataaactgcccgctgcaattttaattagcat
attcatttgcgtctaagtgtgtgcacctatctgtttcttactgttttctt
gtgtcagtgaagacagaaaacaattgtctcttgtaaagatgaacaaggat
ctgtgttgcaaatgtttgttacatattatgacatttccaagactttcttt
gcattctggaaagcaggaggtaaacatttgtagtcattaaggtaaagtct
gttgataaaccatcttctgtttactaacaggtaaattgtagctttcctgg
ctattgaaatgaatagcttctatatactgtacttgggaggcagagagaga
aagccagagagaggtagctaggcaagggccaaccctgttttctgaggagc
tgggtggtctaacagcatccaagatggggcagatgtgccactgaagtcct
acaggagccattgtgataggtataaaatagaaatcagaaatcattcatgt
ttagggaacccacacagtctaggtaaaaacgagtcatgtagtgca
gaattctcctgtgtctatgtaccatctcattgattacagatggacgtgcc
tggctttacaaaggttctggggaggtgaacttaagccctcatatttccta
ggaagtaccttactcattgagtcatctccaaaggccaccattctttttat
gttaaaaatattcttaagagataggagagatttgctgctgttttgacaaa
gacaaatcatttaaaggttaaatactcaaatccagtgcatggtcccaggg
gttggaagtgagcaaaaagccaagaaagtgatagaaaacttgaaagggta
agtttctcaaagtataggatctatgttttgagaggtaacaggattggatg
gtgaaaaagatggaaaactaaaacagatttttcattgccactgcacagtg
tcgatatacaaaggacatgttagtgtctgtgctgtggactaactatctca
agggcatttgctttaggaagttattgtctacagaatggcttgccatctct
ggaagtgtgggaacgcaaatcattctactaactgcgaacctcttttgtcc
cctaaactgttagcactgtaaatgattttttcaaagagaccagtagttca
tgctgaccacatggctcaaaacaaagatttgaaagatgtctaccacactg
agtgatttatatgtctacaagtgtcaattatttattcctttgtttctcca
cacatcaatccaaacttggggaaaatatagaaaagacatgtattaagaat
ttgcttgtctgcactccattatggaacagttcttgcccatatttaaagga
tttatttaaagagatttaaatataaacagattcatatgcacgtgcatgca
taataaagaaagaaaaggaggaaatgttatgtaatttcctttctaatttt
ttttttgtgcaaaataccacatctgacttgcatggcttgggggttcaggg
tttaacagatatcttttcttcttatcagtgtcctaaactgaggacaatga
tgctcctgtataatactaaaatgtggctgatgttattcctgatcagccac
cggttactatgtattgatttggtggctgctcttctgtccgagttagcaaa
ttccaagaagccagaaattgaacaaagtacaagtccgactggcccaggcc
ctggggacaggcctggctctttcttcccttaacccccctccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44419430_44420582
seq2: B6Ng01-095B08.b_43_1187 (reverse)

seq1  TGCACTACATGACTCTTTTTACCCTAGGACTGTGTGTGGCTCCCCAACCC  50
      ||||||||||||||| ||||  |||| ||||||||| || |||| || | 
seq2  TGCACTACATGACTCGTTTTTACCTA-GACTGTGTG-GGTTCCCTAAACA  48

seq1  TGATTGATTTTCTGATTTCTATTTTGATACCTATCACATGGGCT-CTGTA  99
      ||| ||| ||||||||||||||||| ||||||||||||  |||| |||||
seq2  TGAATGA-TTTCTGATTTCTATTTT-ATACCTATCACAATGGCTCCTGTA  96

seq1  GGACTTCAGTGCAACCATCTGCCCCATCTTGGATGCCTGTTAGACCACCC  149
      |||||||||||  | |||||||||||||||||||| ||||||||||||||
seq2  GGACTTCAGTGGCA-CATCTGCCCCATCTTGGATG-CTGTTAGACCACCC  144

seq1  AGCTCCTCTAGAGAACAGGGTTGGCCCTTGCCTAGCTACCTCTCTCTGGC  199
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTC-AGAAAACAGGGTTGGCCCTTGCCTAGCTACCTCTCTCTGGC  193

seq1  TTTCTTCTTCTCTGCCTCCCAAGTACAGTATATAGAAGCTATTCATTTCA  249
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCT--CTCTCTGCCTCCCAAGTACAGTATATAGAAGCTATTCATTTCA  241

seq1  ATAGCCAGGGAAGCTACAATTTACCTGTTAGTAAACAGAAGATGGTTTAT  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGGAAAGCTACAATTTACCTGTTAGTAAACAGAAGATGGTTTAT  291

seq1  CAACAGACTTTACCTTAATGACTACAAATGTTTACCTCCTGCTTTCCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGACTTTACCTTAATGACTACAAATGTTTACCTCCTGCTTTCCAGA  341

seq1  ATGCAAAGAAAGTCTTGGAAATGTCATAATATGTAACAAACATTTGCAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGAAAGTCTTGGAAATGTCATAATATGTAACAAACATTTGCAAC  391

seq1  ACAGATCCTTGTTCATCTTTACAAGAGACAATTGTTTTCTGTCTTCACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCTTGTTCATCTTTACAAGAGACAATTGTTTTCTGTCTTCACTG  441

seq1  ACACAAGAAAACAGTAAGAAACAGATAGGTGCACACACTTAGACGCAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAAAACAGTAAGAAACAGATAGGTGCACACACTTAGACGCAAAT  491

seq1  GAATATGCTAATTAAAATTGCAGCGGGCAGTTTATTAAAAATGTATTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGCTAATTAAAATTGCAGCGGGCAGTTTATTAAAAATGTATTTTA  541

seq1  CAATCCAGCCATTTAAAACATCTTTACACCAACAAACAGAGCAAGAATCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAGCCATTTAAAACATCTTTACACCAACAAACAGAGCAAGAATCG  591

seq1  TAAGTGACTTATCTCAAGAAGAATATATTTATAGTTGGATACAAGTATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACTTATCTCAAGAAGAATATATTTATAGTTGGATACAAGTATTT  641

seq1  TGAAGAATTTTGTACCAAATTATGTTTTGTTATAAGCATTCTGATTTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATTTTGTACCAAATTATGTTTTGTTATAAGCATTCTGATTTTTC  691

seq1  TATTTTTACCCACAGGGAAAAAATTTTAAAACAAGTATCTCGTGTTCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACCCACAGGGAAAAAATTTTAAAACAAGTATCTCGTGTTCATT  741

seq1  TTATGGATGAGAGGACTTCACTCACTGAATCTGCCATGTTTGTCCGAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATGAGAGGACTTCACTCACTGAATCTGCCATGTTTGTCCGAATT  791

seq1  CCAGCTGTTTATCTTGCAAGTTTCTTTAAGATTAATTCAATGCAAATGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTTTATCTTGCAAGTTTCTTTAAGATTAATTCAATGCAAATGGA  841

seq1  ACTCTGAGAATCATGGGAATACCTGCCAGAGCCCTTATTAATGCCTTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGAATCATGGGAATACCTGCCAGAGCCCTTATTAATGCCTTCAC  891

seq1  TTAAACACTCCTTTGCCAGAGAGTCATTAATTTGCTAAAAGAAAAGTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACTCCTTTGCCAGAGAGTCATTAATTTGCTAAAAGAAAAGTGCT  941

seq1  ACAGCAGCCCTTTGCCTACAGCAGCTTTGAGATGGCTGCCCAATTAGTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCCCTTTGCCTACAGCAGCTTTGAGATGGCTGCCCAATTAGTTC  991

seq1  AGTAGCATTCTGATCCTCTTTCTAGGCCCCGTGGCCCTTTGAGGACACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATTCTGATCCTCTTTCTAGGCCCCGTGGCCCTTTGAGGACACAA  1041

seq1  GAAGGCTCCGATGATAACCTGGCAACCCAGGTAGAAACTCAGCCAAGTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCCGATGATAACCTGGCAACCCAGGTAGAAACTCAGCCAAGTGT  1091

seq1  GAGTGTTTGAAGCTGCAGTTTGGCTGCCATCGTGTCGGCAGAAAGAAAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTGAAGCTGCAGTTTGGCTGCCATCGTGTCGGCAGAAAGAAAGA  1141

seq1  ATTC  1153
      ||||
seq2  ATTC  1145

seq1: chr2_44289439_44290658
seq2: B6Ng01-095B08.g_69_1262

seq1  GAATTCTCCTGTGTCTATGTACCATCTCATTGATTACAGATGGACGTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTGTCTATGTACCATCTCATTGATTACAGATGGACGTGCC  50

seq1  TGGCTTTACAAAGGTTCTGGGGAGGTGAACTTAAGCCCTCATATTTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTACAAAGGTTCTGGGGAGGTGAACTTAAGCCCTCATATTTCCTA  100

seq1  GGAAGTACCTTACTCATTGAGTCATCTCCAAAGGCCACCATTCTTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTACCTTACTCATTGAGTCATCTCCAAAGGCCACCATTCTTTTTAT  150

seq1  GTTAAAAATATTCTTAAGAGATAGGAGAGATTTGCTGCTGTTTTGACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAATATTCTTAAGAGATAGGAGAGATTTGCTGCTGTTTTGACAAA  200

seq1  GACAAATCATTTAAAGGTTAAATACTCAAATCCAGTGCATGGTCCCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATCATTTAAAGGTTAAATACTCAAATCCAGTGCATGGTCCCAGGG  250

seq1  GTTGGAAGTGAGCAAAAAGCCAAGAAAGTGATAGAAAACTTGAAAGGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGTGAGCAAAAAGCCAAGAAAGTGATAGAAAACTTGAAAGGGTA  300

seq1  AGTTTCTCAAAGTATAGGATCTATGTTTTGAGAGGTAACAGGATTGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCAAAGTATAGGATCTATGTTTTGAGAGGTAACAGGATTGGATG  350

seq1  GTGAAAAAGATGGAAAACTAAAACAGATTTTTCATTGCCACTGCACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAGATGGAAAACTAAAACAGATTTTTCATTGCCACTGCACAGTG  400

seq1  TCGATATACAAAGGACATGTTAGTGTCTGTGCTGTGGACTAACTATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATATACAAAGGACATGTTAGTGTCTGTGCTGTGGACTAACTATCTCA  450

seq1  AGGGCATTTGCTTTAGGAAGTTATTGTCTACAGAATGGCTTGCCATCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTTGCTTTAGGAAGTTATTGTCTACAGAATGGCTTGCCATCTCT  500

seq1  GGAAGTGTGGGAACGCAAATCATTCTACTAACTGCGAACCTCTTTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGTGGGAACGCAAATCATTCTACTAACTGCGAACCTCTTTTGTCC  550

seq1  CCTAAACTGTTAGCACTGTAAATGATTTTTTCAAAGAGACCAGTAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTGTTAGCACTGTAAATGATTTTTTCAAAGAGACCAGTAGTTCA  600

seq1  TGCTGACCACATGGCTCAAAACAAAGATTTGAAAGATGTCTACCACACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACCACATGGCTCAAAACAAAGATTTGAAAGATGTCTACCACACTG  650

seq1  AGTGATTTATATGTCTACAAGTGTCAATTATTTATTCCTTTGTTTCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTATATGTCTACAAGTGTCAATTATTTATTCCTTTGTTTCTCCA  700

seq1  CACATCAATCCAAACTTGGGGAAAATATAGAAAAGACATGTATTAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAATCCAAACTTGGGGAAAATATAGAAAAGACATGTATTAAGAAT  750

seq1  TTGCTTGTCTGCACTCCATTATGGAACAGTTCTTGCCCATATTT-AAGGA  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGCTTGTCTGCACTCCATTATGGAACAGTTCTTGCCCATATTTAAAGGA  800

seq1  TTTATTTAAAGAGAATTTAAATATAAACAGATTCATATGCACGTGCATGC  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAAGAG-ATTTAAATATAAACAGATTCATATGCACGTGCATGC  849

seq1  ATAATAGAAGAAAGAAAAGGAAGGAAATGTTATGTAATTTCCTTTCTAAT  899
      |||||| ||||||||||||| |||||||||||||||||||||||||||| 
seq2  ATAATA-AAGAAAGAAAAGG-AGGAAATGTTATGTAATTTCCTTTCTAA-  896

seq1  TTTTTTTTTTTGTGCAAAATACCACATCTGACTTGCATGGCTTGGGGGTT  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTTTTTTTGTGCAAAATACCACATCTGACTTGCATGGCTTGGGGGTT  945

seq1  CAGGGTTTTAAACAGATATTCTTTTCTTCTTATCAGTGTCCTATACTGAG  999
      ||||||||  |||||||| |||||||||||||||||||||||| ||||||
seq2  CAGGGTTT--AACAGATA-TCTTTTCTTCTTATCAGTGTCCTAAACTGAG  992

seq1  GACAAATGATGCT-CTGTATAATAACTAAGAGATGTGTGCTGATGTTTAT  1048
      ||| ||||||||| ||||||||| ||||  | ||||| ||||||| ||||
seq2  GAC-AATGATGCTCCTGTATAAT-ACTA--AAATGTG-GCTGATG-TTAT  1036

seq1  TCCTGATCAGCCA-CAGTTACTAATGTAGTGATTTGTTGGCTGCTCTTTC  1097
      ||||||||||||| | |||||| ||||| ||||||| ||||||||| |||
seq2  TCCTGATCAGCCACCGGTTACT-ATGTATTGATTTGGTGGCTGCTC-TTC  1084

seq1  TGTTCAGAGTTAGGCCAAAATTCCCAAAGGAAGCCCAGAATTGAAACAAA  1147
      || || |||||||    |||||||   | ||||||   |||||||   ||
seq2  TG-TCCGAGTTAG---CAAATTCC---AAGAAGCCAGAAATTGAA--CAA  1125

seq1  AGTACAAGCCGCACCTGGCCAGGGCCTGGGGAGCAGGGGCGTGGCT-TTT  1196
      |||||||| |  ||  | ||||| |||||||| ||  ||| ||||| |||
seq2  AGTACAAGTCCGACTGGCCCAGGCCCTGGGGA-CA--GGCCTGGCTCTTT  1172

seq1  CTTCCTCTAACACCCCCCCCCCCC  1220
      |||||  ||  ||||||| |||||
seq2  CTTCCCTTA--ACCCCCCTCCCCC  1194