BAC Information

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BAC

Clone NameB6Ng01-095I02
Chromosome2 (Build37)
Map Location 24,148,540 - 24,329,698
singlet/doubletdoublet
Overlap geneIl1f10, Il1rn, Psd4, Pax8
Upstream geneNxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5
Downstream geneLOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095I02.bB6Ng01-095I02.g
ACCDH906431DH906432
length1,1291,122
definitionDH906431|Mus musculus domesticus DNA, BAC clone: B6Ng01-095I02, 5' end.DH906432|Mus musculus domesticus DNA, BAC clone: B6Ng01-095I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,328,566 - 24,329,698)(24,148,540 - 24,149,672)
sequence
gaattctctgcaaatatgaagtcgcgcttagcaaacgggacatttgttat
aataaggagggtcggatcccgcgcgccgcttggctgagatctctatttag
cctccagggtcggacagtgtggagcagtctccgtttggagggcccacacc
gcactggaagggccaccgccaaccctcctacccccaggggcgcggaaagg
tttcctaaccatttctctgtgaagaagtggtaaagcagtggggggttcag
caggatgttcactccccaggaaagtggaatcccagcggtcttagctgtcc
tggctgacttgggggcagcttcagggactgcgacgtggagaagtcccagc
tcttccctggtgccaccaatgaagctgcccggttctcctgttctgtcagg
tccctagtgcgcccctttgccacgttctaagggcagggcaaaattacctt
tagtcaaactagcatatgcatcggccggccccgggagctgggaggttttc
cagcgaggtctataacttccctagctaggctccctccgcccctcaatccc
cccctgttactctgctttgacctcctcttgacgagagtggggactcacag
accttaaaatcatgagaatgagcgagactcttcttaaatgctgctaaaga
aaaaaagagtgtcagaatttctcctgattggcttgttttcgttctaaaaa
cactcactagaataatcaaaaataaaagacttaaaggcacaatgtactta
tatccttaatcaaacaactgccccagttgctgaaagaaaggcactttttc
ctaccagctcggatgagatcactcttgggggttgagtggctcctcggctg
tctcctgccctgccaaggtatttttctgtctgaggaagctgaggagcctc
ttctccctcctcctacaaaagaagaaattaaaaccgcaaaagagggactt
cctacatcaatacactgattttaaggatgaaaatacctaaagagtcccta
tagtcaattctgtcccgcattttctctcctggtccctgtgttgagccgag
aatgtctctttatttattgatgccctgtcatatttagagaggaattccgt
aactagcccctctgcttttgttgtttgtt
gaattccatttaccctgcagtctccatacagaaacaggccagaggggggc
agacccagtaacttctagctgagccctaccttgcttaaaacctgccatct
gtggtcccctcactgtctgaattgcattctgtcttacctcccagagaagg
tctgtatccttcctaaccgaggcctagaccgctccaaggtccccatcttc
ctggggatgcagggaggaagttgctgcctggcgtgtgtaaagacaagaga
gggacctctcctgcagctggaggtgagacacccctcctcattgcagtcag
tactgccactggaacatagtgacatctttgaacccacatgtcccctctct
tgtttcccatctatctctctttgcctccagctgagggactctagcctttg
gggatgtacagaaagaacatggcttcggaaaactcttccctattgagtcc
ttctttggccaagcctctgaggcactaagggctgacgtcccaaccaaaca
ctcatttcatctcacagctgtctccctttccccacaggatgtgaacatcg
aggacctatacaagggaggtgaacaaaccacccgtttcacctttttccag
agaagcttgggatctgccttcaggcttgaggctgctgcctgccctggctg
gtttctctgtggcccagctgagccccagcagccagtgcagctcaccaaag
agagtgaaccctccacccatactgaattctactttgagatgagtcggtaa
agagacataaggctggggcctcgtctagtgccccagtctgagatcttctt
gctcagcatctctggaaagcagaataaggaagataccaaagatgtttggg
tcttaatccccagaatctgtgaccgtgttacattaaatggcaaagggatt
tttttttcccttcatgggtccatttgggcccattggaatcatctgaggcc
tcatgaggagaaggaagtaggtcagagggagactggggcaaactttggta
ctaaagtaacaatgagacagggacataagctgattggtacagtggttcta
aacgtaatgatgaaaagcctcctgacccaggttctggattttctggactg
agatgggtgaaatatacagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24328566_24329698
seq2: B6Ng01-095I02.b_32_1160 (reverse)

seq1  AACAAACA--AAAAGCCAAGAGGGGCTAGCTAC-GAATTCCTCTCTAAAT  47
      ||||||||  ||||||  ||||||||||| ||| ||||||||||||||||
seq2  AACAAACAACAAAAGC--AGAGGGGCTAGTTACGGAATTCCTCTCTAAAT  48

seq1  ATGGGACAGGGCATCAAATAAATAGAAAGAGCATCTCCGGCTCAACACAG  97
      ||  ||||||||||| |||||||| | ||| |||   |||||||||||||
seq2  AT--GACAGGGCATC-AATAAATAAAGAGA-CATTCTCGGCTCAACACAG  94

seq1  GGACCAGGAGAG-AAATGCGGGACAGATTTGAACTATAGGGACTCCTTTA  146
      |||||||||||| |||||||||||||| ||| |||||||||||| |||||
seq2  GGACCAGGAGAGAAAATGCGGGACAGAATTG-ACTATAGGGACT-CTTTA  142

seq1  GGTATTTTCATCCTTTTAAAAATCAGTGTATTGATGTAGAAAGTCCCTCT  196
      |||||||||||||||   ||||||||||||||||||||| ||||||||||
seq2  GGTATTTTCATCCTT---AAAATCAGTGTATTGATGTAGGAAGTCCCTCT  189

seq1  TTTGCGGTTTT-ATTTCTTCTTTTGTTAGGAGGAGGGAGAAGAGGCTCCT  245
      ||||||||||| ||||||||||||| ||||||||||||||||||||||| 
seq2  TTTGCGGTTTTAATTTCTTCTTTTG-TAGGAGGAGGGAGAAGAGGCTCC-  237

seq1  TCAGCTTCCTCAGACAGAAAATTACC-TGGCAGGGCAGGAGACAGCCGAG  294
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  TCAGCTTCCTCAGACAGAAAAATACCTTGGCAGGGCAGGAGACAGCCGAG  287

seq1  GAGCCACTCAA-CCCCAAGAGTGATCTCATCCGAGCTGGTAGGAAAAAGT  343
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTCAACCCCCAAGAGTGATCTCATCCGAGCTGGTAGGAAAAAGT  337

seq1  GCCTTTCTTTCAGCAACTGGGGCAGTTG-TTGATTAAGGATATAAGTACA  392
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCTTTCTTTCAGCAACTGGGGCAGTTGTTTGATTAAGGATATAAGTACA  387

seq1  TTGTGCCTTT-AGTCTTTTATTTTTGATTATTCTAGTGAGTGTTTTTAGA  441
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTTTAAGTCTTTTATTTTTGATTATTCTAGTGAGTGTTTTTAGA  437

seq1  ACGAAAACAAGCCAATCAGGAGAAATTCTGACACTCTTTTTTTCTTTAGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAACAAGCCAATCAGGAGAAATTCTGACACTCTTTTTTTCTTTAGC  487

seq1  AGCATTTAAGAAGAGTCTCGCTCATTCTCATGATTTTAAGGTCTGTGAGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAAGAAGAGTCTCGCTCATTCTCATGATTTTAAGGTCTGTGAGT  537

seq1  CCCCACTCTCGTCAAGAGGAGGTCAAAGCAGAGTAACAGGGGGGGATTGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCTCGTCAAGAGGAGGTCAAAGCAGAGTAACAGGGGGGGATTGA  587

seq1  GGGGCGGAGGGAGCCTAGCTAGGGAAGTTATAGACCTCGCTGGAAAACCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGAGGGAGCCTAGCTAGGGAAGTTATAGACCTCGCTGGAAAACCT  637

seq1  CCCAGCTCCCGGGGCCGGCCGATGCATATGCTAGTTTGACTAAAGGTAAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCCCGGGGCCGGCCGATGCATATGCTAGTTTGACTAAAGGTAAT  687

seq1  TTTGCCCTGCCCTTAGAACGTGGCAAAGGGGCGCACTAGGGACCTGACAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCTGCCCTTAGAACGTGGCAAAGGGGCGCACTAGGGACCTGACAG  737

seq1  AACAGGAGAACCGGGCAGCTTCATTGGTGGCACCAGGGAAGAGCTGGGAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGAACCGGGCAGCTTCATTGGTGGCACCAGGGAAGAGCTGGGAC  787

seq1  TTCTCCACGTCGCAGTCCCTGAAGCTGCCCCCAAGTCAGCCAGGACAGCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACGTCGCAGTCCCTGAAGCTGCCCCCAAGTCAGCCAGGACAGCT  837

seq1  AAGACCGCTGGGATTCCACTTTCCTGGGGAGTGAACATCCTGCTGAACCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCGCTGGGATTCCACTTTCCTGGGGAGTGAACATCCTGCTGAACCC  887

seq1  CCCACTGCTTTACCACTTCTTCACAGAGAAATGGTTAGGAAACCTTTCCG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCTTTACCACTTCTTCACAGAGAAATGGTTAGGAAACCTTTCCG  937

seq1  CGCCCCTGGGGGTAGGAGGGTTGGCGGTGGCCCTTCCAGTGCGGTGTGGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCTGGGGGTAGGAGGGTTGGCGGTGGCCCTTCCAGTGCGGTGTGGG  987

seq1  CCCTCCAAACGGAGACTGCTCCACACTGTCCGACCCTGGAGGCTAAATAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAACGGAGACTGCTCCACACTGTCCGACCCTGGAGGCTAAATAG  1037

seq1  AGATCTCAGCCAAGCGGCGCGCGGGATCCGACCCTCCTTATTATAACAAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCAGCCAAGCGGCGCGCGGGATCCGACCCTCCTTATTATAACAAA  1087

seq1  TGTCCCGTTTGCTAAGCGCGACTTCATATTTGCAGAGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCGTTTGCTAAGCGCGACTTCATATTTGCAGAGAATTC  1129

seq1: chr2_24148540_24149672
seq2: B6Ng01-095I02.g_70_1191

seq1  GAATTCCATTTACCCTGCAGTCTCCATACAGAAACAGGCCAGAGGGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTACCCTGCAGTCTCCATACAGAAACAGGCCAGAGGGGGGC  50

seq1  AGACCCAGTAACTTCTAGCTGAGCCCTACCTTGCTTAAAACCTGCCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGTAACTTCTAGCTGAGCCCTACCTTGCTTAAAACCTGCCATCT  100

seq1  GTGGTCCCCTCACTGTCTGAATTGCATTCTGTCTTACCTCCCAGAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCCCTCACTGTCTGAATTGCATTCTGTCTTACCTCCCAGAGAAGG  150

seq1  TCTGTATCCTTCCTAACCGAGGCCTAGACCGCTCCAAGGTCCCCATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCCTTCCTAACCGAGGCCTAGACCGCTCCAAGGTCCCCATCTTC  200

seq1  CTGGGGATGCAGGGAGGAAGTTGCTGCCTGGCGTGTGTAAAGACAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATGCAGGGAGGAAGTTGCTGCCTGGCGTGTGTAAAGACAAGAGA  250

seq1  GGGACCTCTCCTGCAGCTGGAGGTGAGACACCCCTCCTCATTGCAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTCTCCTGCAGCTGGAGGTGAGACACCCCTCCTCATTGCAGTCAG  300

seq1  TACTGCCACTGGAACATAGTGACATCTTTGAACCCACATGTCCCCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCACTGGAACATAGTGACATCTTTGAACCCACATGTCCCCTCTCT  350

seq1  TGTTTCCCATCTATCTCTCTTTGCCTCCAGCTGAGGGACTCTAGCCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCATCTATCTCTCTTTGCCTCCAGCTGAGGGACTCTAGCCTTTG  400

seq1  GGGATGTACAGAAAGAACATGGCTTCGGAAAACTCTTCCCTATTGAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTACAGAAAGAACATGGCTTCGGAAAACTCTTCCCTATTGAGTCC  450

seq1  TTCTTTGGCCAAGCCTCTGAGGCACTAAGGGCTGACGTCCCAACCAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGCCAAGCCTCTGAGGCACTAAGGGCTGACGTCCCAACCAAACA  500

seq1  CTCATTTCATCTCACAGCTGTCTCCCTTTCCCCACAGGATGTGAACATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCATCTCACAGCTGTCTCCCTTTCCCCACAGGATGTGAACATCG  550

seq1  AGGACCTATACAAGGGAGGTGAACAAACCACCCGTTTCACCTTTTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTATACAAGGGAGGTGAACAAACCACCCGTTTCACCTTTTTCCAG  600

seq1  AGAAGCTTGGGATCTGCCTTCAGGCTTGAGGCTGCTGCCTGCCCTGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTGGGATCTGCCTTCAGGCTTGAGGCTGCTGCCTGCCCTGGCTG  650

seq1  GTTTCTCTGTGGCCCAGCTGAGCCCCAGCAGCCAGTGCAGCTCACCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGGCCCAGCTGAGCCCCAGCAGCCAGTGCAGCTCACCAAAG  700

seq1  AGAGTGAACCCTCCACCCATACTGAATTCTACTTTGAGATGAGTCGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAACCCTCCACCCATACTGAATTCTACTTTGAGATGAGTCGGTAA  750

seq1  AGAGACATAAGGCTGGGGCCTCGTCTAGTGCCCCCAGTCTGAGATCTTCT  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAGACATAAGGCTGGGGCCTCGTCTAGTG-CCCCAGTCTGAGATCTTCT  799

seq1  TGCTCAGCATCTCTGGAAAGCAGAATAAGGAAGATACCAAAGATGTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCATCTCTGGAAAGCAGAATAAGGAAGATACCAAAGATGTTTGG  849

seq1  GTCTTAATCCCCAGAATCTGTGACCGTGTTACATTAAATGGCAAAGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATCCCCAGAATCTGTGACCGTGTTACATTAAATGGCAAAGGGAT  899

seq1  TTTTTTTTTCCTTCAT-GGTCCATTTGGGCCCATTGGAATCATCTGAGGC  949
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCCTTCATGGGTCCATTTGGGCCCATTGGAATCATCTGAGGC  949

seq1  CTCATGAGGAGAAGGAAG-AGGTCAGAGGGAGACTGGGGCAAACTTTGGT  998
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCATGAGGAGAAGGAAGTAGGTCAGAGGGAGACTGGGGCAAACTTTGGT  999

seq1  ACTAAAAGTAACAATGGAGACAGGGACCATAAGCTGATGGGTAACAGTGG  1048
      ||| ||||||||||| |||||||||| ||||||||||| ||| |||||||
seq2  ACT-AAAGTAACAAT-GAGACAGGGA-CATAAGCTGATTGGT-ACAGTGG  1045

seq1  TTTCTAGAAACCGGAAATGATGAGAGCTCTCCTGACACAGGTTCTGGATT  1098
       ||||  ||||  | |||||||| |   |||||||| ||||||||||| |
seq2  -TTCT--AAAC--GTAATGATGAAAAGCCTCCTGACCCAGGTTCTGGA-T  1089

seq1  TTTCTGGACTGAAGAATGGTGAAATAATACAGCTC  1133
      ||||||||||| |||  |||||||| |||||||||
seq2  TTTCTGGACTG-AGATGGGTGAAAT-ATACAGCTC  1122