BAC Information

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BAC

Clone NameB6Ng01-095J22
Chromosome2 (Build37)
Map Location 149,553,537 - 149,679,574
singlet/doubletdoublet
Overlap geneEG667048, C530025M09Rik, OTTMUSG00000015750
Upstream geneNapb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10
Downstream geneLOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095J22.bB6Ng01-095J22.g
ACCDH906511DH906512
length8111,135
definitionDH906511|Mus musculus domesticus DNA, BAC clone: B6Ng01-095J22, 5' end.DH906512|Mus musculus domesticus DNA, BAC clone: B6Ng01-095J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,678,759 - 149,679,574)(149,553,537 - 149,554,684)
sequence
ttcactattatatgactttatttgccataggcaactgccagggttgagcc
ctagtcatttccttgaaataaaaggcaatgctcctagaggaccatagacc
attcaaagcatcatggtttaaaacatccttgtagaggaatgtatctgcta
aattcttattgtagatataaaagtatgtagatatgaaggtatgaagctat
gtagatatgtacaaccagaggcatcgggaagaatccagagtagggaaaga
aagcagtagaacaaatatgaccagcagacaactgaaccaggccatgcaga
ctgaaacaggccatgcaaagagaggggttggggatgaaagaggaagagaa
gaaaaagggcaagggagacagaaagagaggaccaagaaatgagagggcaa
aagaaaccaaaaaagcccatggtagaaacagcagggttatataggaatca
gaaactagaggaagggaagggaagcatactagagaagtttgggtagctcc
agtggggtgagaggagctgagagaagccacatgtactgagtgagcctggg
agccagcacccactttagtatgctaataggcaccagttagccacctgtcc
tgagttctttgggacctgacatctagtattttaatatgagtagttttcaa
agaatatgtaatatcagagggaaatcttgttaaaataagtcaacttaaac
caagaaaaagctttacaactgtacagagtgatgggtagaggggaaagata
gatagatagatagatagatagattgatgaaagatggaactaatgcgtttt
aacagagattc
gaattccttgttctgttgacaatgcacatagtgatcatattttattccag
aaaaataatcttattggatcccttgaaactgtgctatacagaggtccata
gtttttggttgtaagtgattaatgagaaaggtgacacagactatacagaa
aacgcatgaaaatacactttatgcttcttcataaatgtataaaaagatta
tagaaagacaaccgctaagcctggcttctccctgccttcattgatttcaa
cagaccacagatccacaaggatgatgatgatgatggtaatgtgcaaggga
atgtgaagagtgtacaaaatattctaattaataatacatggttaattatg
catgctcatgtacataaaattaatatattgatagaatcatttcaatttag
agatgtggcttttgtaaagcctgaatgtttcactccaaatcaaatgtatc
cagaaacataaataatgaattgtgctcattaaataattcgtatctttagt
agcaaaaagttagaagtaatattggattttttagagggtgggtaaccctt
tatagttttgttttttctcctttctttcctcttccatccctccgcccttc
attcatctttctttctttccaattaataattttcacttggttagaaaatt
ttctacaacataaggctacagagatggctcataggagaaccaatttagtt
ccccagcatctgagtggtacatgagaagtgctgagaagtccaaggcggtg
ttccctccagagccattctagccagtgaatgctgggttcagtaggagagc
tcatctcaaaaactaaagtagaagtctatggaacagaacactcagtgtca
acctctgggcctccacacaggcatatacacttgtctgcaggtgtatcact
catgcatgcacatgtacaggaactcaatgcacaatacaagaaacatatat
tttcacttatacaattcttccctacctctcacctaaaccactgattgtaa
gtattgaacaccaaactctcatgacgaacacttaccaagtgcctcttctc
agcactgtcctcacctctgctaggtaattgtttccagcttaaagggactt
atttcatgactgagtccatctaaggttccagcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_149678759_149679574
seq2: B6Ng01-095J22.b_60_870 (reverse)

seq1  GAATCTCAGTTAAAACACAATTATGTATCCATCTATTCATCAATCTATCT  50
      ||||||| |||||||| | |||| || ||||||| |||||||||||||||
seq2  GAATCTCTGTTAAAACGC-ATTA-GT-TCCATCT-TTCATCAATCTATCT  46

seq1  ATCTATCTATCTATCTATCTTTCCCCCTCTACCCATCACTCTGTACAGTT  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTTT-CCCCTCTACCCATCACTCTGTACAGTT  95

seq1  GTAAAGCTTTTTCTTGGTTTAAGTTGACTTATTTTAACAAGATTTCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTTTTTCTTGGTTTAAGTTGACTTATTTTAACAAGATTTCCCTC  145

seq1  TGATATTACATATTCTTTGAAAACTACTCATATTAAAATACTAGATGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTACATATTCTTTGAAAACTACTCATATTAAAATACTAGATGTCA  195

seq1  GGTCCCAAAGAACTCAGGACAGGTGGCTAACTGGTGCCTATTAGCATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAAAGAACTCAGGACAGGTGGCTAACTGGTGCCTATTAGCATACT  245

seq1  AAAGTGGGTGCTGGCTCCCAGGCTCACTCAGTACATGTGGCTTCTCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGTGCTGGCTCCCAGGCTCACTCAGTACATGTGGCTTCTCTCAG  295

seq1  CTCCTCTCACCCCACTGGAGCTACCCAAACTTCTCTAGTATGCTTCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCACCCCACTGGAGCTACCCAAACTTCTCTAGTATGCTTCCCTT  345

seq1  CCCTTCCTCTAGTTTCTGATTCCTATATAACCCTGCTGTTTCTACCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTAGTTTCTGATTCCTATATAACCCTGCTGTTTCTACCATGG  395

seq1  GCTTTTTTGGTTTCTTTTGCCCTCTCATTTCTTGGTCCTCTCTTTCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTGGTTTCTTTTGCCCTCTCATTTCTTGGTCCTCTCTTTCTGTC  445

seq1  TCCCTTGCCCTTTTTCTTCTCTTCCTCTTTCATCCCCAACCCCTCTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCCCTTTTTCTTCTCTTCCTCTTTCATCCCCAACCCCTCTCTTT  495

seq1  GCATGGCCTGTTTCAGTCTGCATGGCCTGGTTCAGTTGTCTGCTGGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCTGTTTCAGTCTGCATGGCCTGGTTCAGTTGTCTGCTGGTCAT  545

seq1  ATTTGTTCTACTGCTTTCTTTCCCTACTCTGGATTCTTCCCGATGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCTACTGCTTTCTTTCCCTACTCTGGATTCTTCCCGATGCCTCT  595

seq1  GGTTGTACATATCTACATAGCTTCATACCTTCATATCTACATACTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACATATCTACATAGCTTCATACCTTCATATCTACATACTTTTAT  645

seq1  ATCTACAATAAGAATTTAGCAGATACATTCCTCTACAAGGATGTTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAATAAGAATTTAGCAGATACATTCCTCTACAAGGATGTTTTAAA  695

seq1  CCATGATGCTTTGAATGGTCTATGGTCCTCTAGGAGCATTGCCTTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGCTTTGAATGGTCTATGGTCCTCTAGGAGCATTGCCTTTTATT  745

seq1  TCAAGGAAATGACTAGGGCTCAACCCTGGCAGTTGCCTATGGCAAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAATGACTAGGGCTCAACCCTGGCAGTTGCCTATGGCAAATAAA  795

seq1  GTCATATAATAGTGAA  816
      ||||||||||||||||
seq2  GTCATATAATAGTGAA  811

seq1: chr2_149553537_149554684
seq2: B6Ng01-095J22.g_67_1201

seq1  GAATTCCTTGTTCTGTTGACAATGCACATAGTGATCATATTTTATTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTTCTGTTGACAATGCACATAGTGATCATATTTTATTCCAG  50

seq1  AAAAATAATCTTATTGGATCCCTTGAAACTGTGCTATACAGAGGTCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATCTTATTGGATCCCTTGAAACTGTGCTATACAGAGGTCCATA  100

seq1  GTTTTTGGTTGTAAGTGATTAATGAGAAAGGTGACACAGACTATACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGTTGTAAGTGATTAATGAGAAAGGTGACACAGACTATACAGAA  150

seq1  AACGCATGAAAATACACTTTATGCTTCTTCATAAATGTATAAAAAGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCATGAAAATACACTTTATGCTTCTTCATAAATGTATAAAAAGATTA  200

seq1  TAGAAAGACAACCGCTAAGCCTGGCTTCTCCCTGCCTTCATTGATTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGACAACCGCTAAGCCTGGCTTCTCCCTGCCTTCATTGATTTCAA  250

seq1  CAGACCACAGATCCACAAGGATGATGATGATGATGGTAATGTGCAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCACAGATCCACAAGGATGATGATGATGATGGTAATGTGCAAGGGA  300

seq1  ATGTGAAGAGTGTACAAAATATTCTAATTAATAATACATGGTTAATTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGAGTGTACAAAATATTCTAATTAATAATACATGGTTAATTATG  350

seq1  CATGCTCATGTACATAAAATTAATATATTGATAGAATCATTTCAATTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCATGTACATAAAATTAATATATTGATAGAATCATTTCAATTTAG  400

seq1  AGATGTGGCTTTTGTAAAGCCTGAATGTTTCACTCCAAATCAAATGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGCTTTTGTAAAGCCTGAATGTTTCACTCCAAATCAAATGTATC  450

seq1  CAGAAACATAAATAATGAATTGTGCTCATTAAATAATTCGTATCTTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACATAAATAATGAATTGTGCTCATTAAATAATTCGTATCTTTAGT  500

seq1  AGCAAAAAGTTAGAAGTAATATTGGATTTTTTAGAGGGTGGGTAACCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAGTTAGAAGTAATATTGGATTTTTTAGAGGGTGGGTAACCCTT  550

seq1  TATAGTTTTGTTTTTTCTCCTTTCTTTCCTCTTCCATCCCTCCGCCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTTGTTTTTTCTCCTTTCTTTCCTCTTCCATCCCTCCGCCCTTC  600

seq1  ATTCATCTTTCTTTCTTTCCAATTAATAATTTTCACTTGGTTAGAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTTTCTTTCTTTCCAATTAATAATTTTCACTTGGTTAGAAAATT  650

seq1  TTCTACAACATAAGGCTACAGAGATGGCTCATAGGAGAACCAATTTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAACATAAGGCTACAGAGATGGCTCATAGGAGAACCAATTTAGTT  700

seq1  CCCCAGCATCTGAGTGGTACATGAGAAGTGCTGAGAAGTCCAAGGCAGGT  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCCAGCATCTGAGTGGTACATGAGAAGTGCTGAGAAGTCCAAGGC-GGT  749

seq1  GTTCCC-CCAGAGCCATTCTAGCCAGTGAATGCTGGGTTCAGTAGGAGAG  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCCAGAGCCATTCTAGCCAGTGAATGCTGGGTTCAGTAGGAGAG  799

seq1  CTCATCTCAAAAACTAAGGTAGAAGTCTATGGAACAGAACACCCAGTGTC  849
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  CTCATCTCAAAAACTAAAGTAGAAGTCTATGGAACAGAACACTCAGTGTC  849

seq1  AACCTCT-GGCCTCCACACAGGCATATACACTTGTCTGCAGGTGTATTCA  898
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  AACCTCTGGGCCTCCACACAGGCATATACACTTGTCTGCAGGTGTA-TCA  898

seq1  CTCATGCATGCACATGTACAGGAACTCAAATGCACAAATACAAGAAACAT  948
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CTCATGCATGCACATGTACAGGAACTC-AATGCAC-AATACAAGAAACAT  946

seq1  ATATTTTCACTTATTACAATTCTTCCCTACCTCTCACCTAAACCACTGAT  998
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCACTTA-TACAATTCTTCCCTACCTCTCACCTAAACCACTGAT  995

seq1  TTGTTAAGTATTGAACACCAAACTCTCATGAACGAAACACTTACCAAAGT  1048
      |   |||||||||||||||||||||||||| ||| |||||||||| ||||
seq2  T--GTAAGTATTGAACACCAAACTCTCATG-ACG-AACACTTACC-AAGT  1040

seq1  GGCTCTTCTCAAGCAACTTGTTCCTCACCTCTGCTAGGTAATTGTTT-CA  1097
      | |||||||| ||| |||   |||||||||||||||||||||||||| ||
seq2  GCCTCTTCTC-AGC-ACT--GTCCTCACCTCTGCTAGGTAATTGTTTCCA  1086

seq1  GCTCTAAAGGGAACTTATTTCATGACTGAGTCAATCTAAGGTCCCAGCAG  1147
      ||| ||||||| |||||||||||||||||||| ||||||||| |||||||
seq2  GCT-TAAAGGG-ACTTATTTCATGACTGAGTCCATCTAAGGTTCCAGCAG  1134

seq1  A  1148
      |
seq2  A  1135