BAC Information

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BAC

Clone NameB6Ng01-095K04
Chromosome2 (Build37)
Map Location 30,885,862 - 31,014,539
singlet/doubletdoublet
Overlap geneFnbp1, Gpr107
Upstream geneSpna2, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20
Downstream geneFreq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095K04.bB6Ng01-095K04.g
ACCDH906520DH906521
length1,212980
definitionDH906520|Mus musculus domesticus DNA, BAC clone: B6Ng01-095K04, 5' end.DH906521|Mus musculus domesticus DNA, BAC clone: B6Ng01-095K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,885,862 - 30,887,107)(31,013,551 - 31,014,539)
sequence
gaattcactatgtagaccaggctggccttgaactgacagatctaccttca
tctgggtcccaagtgctgggattacattgatttgtatgtgttttgtgtaa
gtgtgcacatgtgccatggtgcacgaaggtcagaggtcaacttctgggac
acaggtcaacttaggggagttggtcttttccttcaaccatgtgagtcccg
gggacagcactagaattcgtcaggcttggggacaaatgtcttcacatacc
gagccaccttcccctgacacacatctccagtctccctttttaaacagcaa
actattggaagaaatgtctgtgttcgccactgaggagatagaaactacag
agcatcactcagttagtcaatgctgaactcattcatctgttcggatccta
aggtagtcaacttaatagcacacacttaagccaggacctgcacaaaccag
agggaaacccctccggttcacctagcaggccgttcaccagctcactgctg
gacctctctctttgagatgttttgggctttgtttttaagacagggtctat
cttatgtagttctagttgttcaggaactcactgtgtagactagaccgatc
ttaaacacacagaactctgctggcttctgcctatcaacggagtgggagtg
atgcacttctttaatcccagcactcaagaggcagaggcaggtggatctct
gtgagtctgagtccggcctggtctacagagtgagttcaggctgtccagga
tagccagggctacatagtgagactctttctagaaaagccaaaaagaagaa
ggaggaggaagaagaggagaagaagtagaagtggaggagaaaagagaagg
aggaagaacaggaaaaggaggggagatcacagccaagaagtgagttctgg
ataaaaagggcttctccagtctttctagcacctggtcacatgcccaattt
gcccttcctcctatccaatcagaaggctcttcaggggtcaggtacctgca
ggggattgagcccacatggctgactaaaagtactgtgacagcagactcac
tcggagaaatgtgagctacaaagctgatggtataacaagtctggtggctg
gtcacctgaaactgcctagtctgaggtggctgctgggcttcgaaggcatg
ggataccttcttgcactatgtaactgccaagcagtgcatacatggaattg
ccttatcttggc
gaattcaaatgcccaagaccaaggaggatgtttctaattcaaactatcac
agatgataagacccagttttgggctgggtgtggtggtgcatgcctttaat
cccagcacttgggaggcagaggcagtcggatttctgagttcgagaccagc
ctggtctacagagtgagttccaggacagccagggctatacagagaaaccc
tgtctcaaaaacaaaaaacaaaaacaaattaaaaaatccagttttttaag
aaaatcactctagggctggagagatggctcagtggttaagagcactgact
gctctttcaaaagtcctgaattcaattcccaacatccacatggtggctca
taaccatctatcctgtatcagatgccctcctgtggcatgcagacgcctat
acatacataaatacatacacacacacacatacacacacacatacacacac
acacacacacacacacacacgtgcgcgcgcgcgcacacacagagagagag
agagagagagagagagagtgaatcaccctagtgggctaaataaataagta
aaatgtaaaactctatgagctagaagatgctggagactacactggtccag
gagtcattaagggtggaccagaggaagcagcaattgtggtaataacacac
aagaagacaggggattgggagctatttagaatactttacagaacttggtg
acttggtgaaatgacagacttccagcttgagaaatgagcagccagtggtc
tagttactaagaaagtcaaagtgggagggagagtccacaggctgggggtg
gagggtgggggaggatatcccacccacccggagacaatgagagcttctga
acccgcacaggtctggctaccccctcccacatacgcaactttttcctgaa
aggtatagaagacagatggggtagctcgttctggaatcccatactgggaa
gcaggtcatgatatcagactcaagacaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30885862_30887107
seq2: B6Ng01-095K04.b_41_1252

seq1  GAATTCACTATGTAGACCAGGCTGGCCTTGAACTGACAGATCTACCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAGGCTGGCCTTGAACTGACAGATCTACCTTCA  50

seq1  TCTGGGTCCCAAGTGCTGGGATTACATTGATTTGTATGTGTTTTGTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCCAAGTGCTGGGATTACATTGATTTGTATGTGTTTTGTGTAA  100

seq1  GTGTGCACATGTGCCATGGTGCACGAAGGTCAGAGGTCAACTTCTGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACATGTGCCATGGTGCACGAAGGTCAGAGGTCAACTTCTGGGAC  150

seq1  ACAGGTCAACTTAGGGGAGTTGGTCTTTTCCTTCAACCATGTGAGTCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCAACTTAGGGGAGTTGGTCTTTTCCTTCAACCATGTGAGTCCCG  200

seq1  GGGACAGCACTAGAATTCGTCAGGCTTGGGGACAAATGTCTTCACATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGCACTAGAATTCGTCAGGCTTGGGGACAAATGTCTTCACATACC  250

seq1  GAGCCACCTTCCCCTGACACACATCTCCAGTCTCCCTTTTTAAACAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCTTCCCCTGACACACATCTCCAGTCTCCCTTTTTAAACAGCAA  300

seq1  ACTATTGGAAGAAATGTCTGTGTTCGCCACTGAGGAGATAGAAACTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGAAGAAATGTCTGTGTTCGCCACTGAGGAGATAGAAACTACAG  350

seq1  AGCATCACTCAGTTAGTCAATGCTGAACTCATTCATCTGTTCGGATCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACTCAGTTAGTCAATGCTGAACTCATTCATCTGTTCGGATCCTA  400

seq1  AGGTAGTCAACTTAATAGCACACACTTAAGCCAGGACCTGCACAAACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTCAACTTAATAGCACACACTTAAGCCAGGACCTGCACAAACCAG  450

seq1  AGGGAAACCCCTCCGGTTCACCTAGCAGGCCGTTCACCAGCTCACTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACCCCTCCGGTTCACCTAGCAGGCCGTTCACCAGCTCACTGCTG  500

seq1  GACCTCTCTCTTTGAGATGTTTTGGGCTTTGTTTTTAAGACAGGGTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTCTCTTTGAGATGTTTTGGGCTTTGTTTTTAAGACAGGGTCTAT  550

seq1  CTTATGTAGTTCTAGTTGTTCAGGAACTCACTGTGTAGACTAGACCGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTAGTTCTAGTTGTTCAGGAACTCACTGTGTAGACTAGACCGATC  600

seq1  TTAAACACACAGAACTCTGCTGGCTTCTGCCTATCAACGGAGTGGGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACACAGAACTCTGCTGGCTTCTGCCTATCAACGGAGTGGGAGTG  650

seq1  ATGCACTTCTTTAATCCCAGCACTCAAGAGGCAGAGGCAGGTGGATCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTCTTTAATCCCAGCACTCAAGAGGCAGAGGCAGGTGGATCTCT  700

seq1  GTGAGTCTGAGTCCGGCCTGGTCTACAGAGTGAGTTCAGGCTGTCCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTGAGTCCGGCCTGGTCTACAGAGTGAGTTCAGGCTGTCCAGGA  750

seq1  TAGCCAGGGCTACATAGTGAGACTCTTTCTAGAAAAGCCAAAAAGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGGCTACATAGTGAGACTCTTTCTAGAAAAGCCAAAAAGAAGAA  800

seq1  GGAGGAGGAAGAAGAGGAGAAGAAGTAGAAGTGGAGGAGAAAAGAGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAAGAAGAGGAGAAGAAGTAGAAGTGGAGGAGAAAAGAGAAGG  850

seq1  AGGAAGAACAGGAAAAGGAGGGGGAGATCACAGCCAAGAAGTGAGTTCTG  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGAAGAACAGGAAAAGGA-GGGGAGATCACAGCCAAGAAGTGAGTTCTG  899

seq1  GATAAAGAGGGCTTCTCCAGTCTTTCTAGCCACCTGGTCACATGCCCAAT  950
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  GATAAAAAGGGCTTCTCCAGTCTTTCTAG-CACCTGGTCACATGCCCAAT  948

seq1  TTGCCCTTCCTCCTATCCAATCAGAAGGCTCTTCAGGGGTTCAGGGTACC  1000
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  TTGCCCTTCCTCCTATCCAATCAGAAGGCTCTTCAGGGG-TCA-GGTACC  996

seq1  TGCAGGGGGATTGAGCCCCACAATGGCTGACCTTAAAAGTACTGTGACAG  1050
      |||| |||||||||| ||||| |||||||||  |||||||||||||||||
seq2  TGCA-GGGGATTGAG-CCCAC-ATGGCTGAC--TAAAAGTACTGTGACAG  1041

seq1  CAAGACTCACTCGGAGAAAATGTGAGCTACAAAGCTGATGTGTATTAAAC  1100
      | |||||||||||||| ||||||||||||||||||||||| ||||  |||
seq2  C-AGACTCACTCGGAG-AAATGTGAGCTACAAAGCTGATG-GTAT--AAC  1086

seq1  AGGTCTGGTGGGCTGGGTCAGCTCGAGACTGCACTAGTCTGAGGTGTGGC  1150
      | ||||||| |||| ||||| || || ||||| ||||||||||  |||||
seq2  AAGTCTGGT-GGCT-GGTCACCT-GAAACTGC-CTAGTCTGAG--GTGGC  1130

seq1  TGCTGGGGCTTCAGGAAGGCCATGGG-GACCTCTTTGTGCCACTTATGTA  1199
      |||| |||||||  ||||| ||||||  ||||  |||   ||| ||||||
seq2  TGCT-GGGCTTC--GAAGG-CATGGGATACCTTCTTG---CAC-TATGTA  1172

seq1  ACTGCCAACAGCCAGTCACTACTATGAAATATTGTCTTTATCTTGGC  1246
      ||||||||    ||||   ||| ||| |  |||| | ||||||||||
seq2  ACTGCCAA---GCAGTGCATAC-ATGGA--ATTG-CCTTATCTTGGC  1212

seq1: chr2_31013551_31014539
seq2: B6Ng01-095K04.g_66_1045 (reverse)

seq1  GTTTGTCTTTGAACTCTTGATCTCATGCCCCTGCCTCCCAATTATGGGAT  50
      |||||||||   | || |||| |||||  ||||| |||| | ||||||||
seq2  GTTTGTCTT--GAGTC-TGATATCATG-ACCTGCTTCCC-AGTATGGGAT  45

seq1  TCCAAGCACAGGCTACCCCATCTGTCTTCTTTACCTTTCATGGAAATAGT  100
      ||| || ||  ||||||||||||||||||| ||||||||| ||||| |||
seq2  TCC-AGAACGAGCTACCCCATCTGTCTTCTATACCTTTCA-GGAAAAAGT  93

seq1  TCGGTATGTTGGGGTGGGGTGGCCAGACCTGTGCGTGTTCAGATGCTCTC  150
      |  ||||| ||||  ||||| |||||||||||||| ||||||| ||||||
seq2  TGCGTATG-TGGGAGGGGGTAGCCAGACCTGTGCGGGTTCAGAAGCTCTC  142

seq1  ATTGTCTCCTGTGTTGGTTGGGCTATCCT-CCCCACCCTCCACCCCCAGC  199
      |||||||||   | ||| |||| |||||| ||||||||||||||||||||
seq2  ATTGTCTCC--GGGTGGGTGGGATATCCTCCCCCACCCTCCACCCCCAGC  190

seq1  CTGTGGACTCTCCCTCCCACTTTGACTTTCTTAGTAACTAGACCACTGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACTCTCCCTCCCACTTTGACTTTCTTAGTAACTAGACCACTGGC  240

seq1  TGCTCATTTCTCAAGCTGGAAGTCTGTCATTTCACCAAGTCACCAAGTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTCTCAAGCTGGAAGTCTGTCATTTCACCAAGTCACCAAGTTC  290

seq1  TGTAAAGTATTCTAAATAGCTCCCAATCCCCTGTCTTCTTGTGTGTTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTATTCTAAATAGCTCCCAATCCCCTGTCTTCTTGTGTGTTATT  340

seq1  ACCACAATTGCTGCTTCCTCTGGTCCACCCTTAATGACTCCTGGACCAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATTGCTGCTTCCTCTGGTCCACCCTTAATGACTCCTGGACCAGT  390

seq1  GTAGTCTCCAGCATCTTCTAGCTCATAGAGTTTTACATTTTACTTATTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTCCAGCATCTTCTAGCTCATAGAGTTTTACATTTTACTTATTTA  440

seq1  TTTAGCCCACTAGGGTGATTCACTCTCTCTCTCTCTCTCTCTCTCTCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCCACTAGGGTGATTCACTCTCTCTCTCTCTCTCTCTCTCTCTCT  490

seq1  GTGTGTGCGCGCGCGCGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGCGCGCGCGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT  540

seq1  GTGTGTGTGTATGTGTGTGTGTGTATGTATTTATGTATGTATAGGCGTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTATGTGTGTGTGTGTATGTATTTATGTATGTATAGGCGTCT  590

seq1  GCATGCCACAGGAGGGCATCTGATACAGGATAGATGGTTATGAGCCACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCACAGGAGGGCATCTGATACAGGATAGATGGTTATGAGCCACCA  640

seq1  TGTGGATGTTGGGAATTGAATTCAGGACTTTTGAAAGAGCAGTCAGTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGTTGGGAATTGAATTCAGGACTTTTGAAAGAGCAGTCAGTGCT  690

seq1  CTTAACCACTGAGCCATCTCTCCAGCCCTAGAGTGATTTTCTTAAAAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCACTGAGCCATCTCTCCAGCCCTAGAGTGATTTTCTTAAAAAAC  740

seq1  TGGATTTTTTAATTTGTTTTTGTTTTTTGTTTTTGAGACAGGGTTTCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTTAATTTGTTTTTGTTTTTTGTTTTTGAGACAGGGTTTCTCT  790

seq1  GTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTCG  840

seq1  AACTCAGAAATCCGACTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCCGACTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCA  890

seq1  TGCACCACCACACCCAGCCCAAAACTGGGTCTTATCATCTGTGATAGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACCACACCCAGCCCAAAACTGGGTCTTATCATCTGTGATAGTTT  940

seq1  GAATTAGAAACATCCTCCTTGGTCTTGGGCATTTGAATTC  989
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGAAACATCCTCCTTGGTCTTGGGCATTTGAATTC  980