BAC Information

Click to search

BAC

Clone NameB6Ng01-095N16
Chromosome2 (Build37)
Map Location 61,223,408 - 61,407,122
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10, Dpp4, Gcg, Fap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095N16.bB6Ng01-095N16.g
ACCDH906679DH906680
length1,0911,116
definitionDH906679|Mus musculus domesticus DNA, BAC clone: B6Ng01-095N16, 5' end.DH906680|Mus musculus domesticus DNA, BAC clone: B6Ng01-095N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,406,013 - 61,407,122)(61,223,408 - 61,224,544)
sequence
gaattcagtggtctgttctcaagcctgagtggacagtctgggccctattc
ttgcttctcccttgtgtgaattctgttcttactgccttgcctttacttgc
ccatgggctttgttccactgtgtccactcaacaggaagcactctgtctcc
gttgtcacagcgagcctactagtcaccaatctgcaagtcaagtttttgaa
ttgaaaagcctttttaaaaacagtcattgatgctgattttaaaccatagt
taaaacatagttttgccttctctatcaagttatttccttctgtgtttaga
ttttatatttatttgtgtgtttgtgcattcgcgtgcgcatgtgtgtgcat
ggccatgtccagaaaaggcattgtgaaccatcaacttgacatggatgctg
ggaatcaaactccagtcttgcagaaaagcaccaaatggtcttaacaacta
agtgcctccccctcccgccctccccccatctcctttctctcccccagatc
cattccccatctgtttcccttcaaaaacaaagagcaggcctcccagggat
atcaactaacacggcataacaaattataataagccgggcgtggtggcgta
cacctttaatcccagcacttgggaggcagaggcaggtagatttctgagtt
tgaggccagcctggtctacagagtgagttccaggacagccaggactacac
agagaaaccctgtctcgaaaaaacaaaacaaaacaaaacaaaatataata
agactaggtacaagtctcacgtcaaggctggacaaggcaacccagtatca
gcgaagagttccaagcacaagcaaaagagtcagaaataaccccaacggtt
ggagtcccacaagaacacaactgtaatgtgtactcagagggggcccatga
ttcagtctctggaggccctatgagccctgctcagctctgcccagtgagca
gcactaactcttaaaagatgcagaaataaatcctgacagagatcagctct
gtttctactctgtcctcacactgggtggctgctcatctatgcagctggtt
ggataactgtctgtgcactgacagagatgagaggcttacgt
gaattcacacagactttgtgcatttttcctttcctaagcacagtaccttt
gttatcatcctctgagcttgtatctaaattacaaacccagaatcacaata
aaatttcccgaggccaaggaatacattttatagagaagataacacgggaa
gtgcatgattggagaatccaagctcctatcttggaacatgttattctgca
ggaagcaaatagcagcaactttgacagcccagaagctggtgtctatctct
gctttacagtttctccctgcggtatgatcaagcatatttctcaaactttt
atccactgcgaaagctttctttattcttctgctctttgagtggggctgtt
ctgtgtcttgtgtcaaagaatcaaatgttagggcctagctaaggcaccag
cttgagggccatatccaatcatgtatgtgcagcccgcctgagtcttgcac
acaatctatgaggaagcataatgagaatatgtgggcctggcaaccatggg
agaaggttgaccttcccataacagctcagccaaggacaagaaaaccggga
atgctacacttgaggtttctcatactggtggatgaaatgggctctcatta
atgatgcttgacgttaactcttaaaatggttaagaagagtcaaaatacaa
gccacctaatactaaaaacatgagattgcatatttaatgcagccaccaca
gtgccagggatataaccaatttgttgctttccctaaccgttatctcttgc
tgtggtcatgaaatgcaccacatatacaaaaattatgagtactatatggt
gtatagatataggttagaaacaaaatgccagaaaaaaagaatctaggtat
ctccacctagtttgaggttaatggatcctatcttttatatttaattttca
tgcagaaaaatcaggcctcttacaggtgtaaactaagtatacctctttac
atttaatttacttttaggaaatgtagcagggacaaacaagtcatcactgc
ttgctagatgacctggcacccagagcaatctatgttcctcagtcctccta
ctgtcagaataatcacaaactcctcatcttcccgggagccctgtgaaaga
atagaagaatataacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_61406013_61407122
seq2: B6Ng01-095N16.b_48_1138 (reverse)

seq1  ACGTAAACCTCTCATCTCTGTCAAGTTGCCACAGACAGTTTTATCCAACG  50
      |||||| ||||||||||||||| |||   |||||||||  ||||||||| 
seq2  ACGTAAGCCTCTCATCTCTGTC-AGT--GCACAGACAG--TTATCCAAC-  44

seq1  CAGGCTGCATAGATGAGCAGCCAACACAGTGTGAGGACCAAGAGTAGAAA  100
      || ||||||||||||||||||| || ||||||||||||  ||||||||||
seq2  CA-GCTGCATAGATGAGCAGCC-ACCCAGTGTGAGGAC--AGAGTAGAAA  90

seq1  CAAGAGCCTGAATCTCTGTCAGGATTTATTTCTGCCATCTTTTAAGAGTT  150
      | |||| ||| ||||||||||||||||||||||| |||||||||||||||
seq2  C-AGAG-CTG-ATCTCTGTCAGGATTTATTTCTG-CATCTTTTAAGAGTT  136

seq1  AGTGCTGCTTCCACTGGGCAGAGCTGAGCAGGGCTCATAGGGCCCTCCAG  200
      |||||||||  ||||||||||||||||||||||||||||||| |||||||
seq2  AGTGCTGCT--CACTGGGCAGAGCTGAGCAGGGCTCATAGGG-CCTCCAG  183

seq1  AGACTGAATCATGGGCCCCCCTCTGAGTACACATTACAGTTGTGTTCTTG  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGACTGAATCATGGG-CCCCCTCTGAGTACACATTACAGTTGTGTTCTTG  232

seq1  TGGGACTCCAACCGTTGGGGTTATTTCTGACTCTTTTGCTTGTGCTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCCAACCGTTGGGGTTATTTCTGACTCTTTTGCTTGTGCTTGGA  282

seq1  ACTCTTCGCTGATACTGGGTTGCCTTGTCCAGCCTTGACGTGAGACTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCGCTGATACTGGGTTGCCTTGTCCAGCCTTGACGTGAGACTTGT  332

seq1  ACCTAGTCTTATTATATTTTGTTTTGTTTTGTTTTGTTTTTTTCGAGACA  400
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCTAGTCTTATTATATTTTGTTTTGTTTTGTTTTG-TTTTTTCGAGACA  381

seq1  GGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAG  431

seq1  GCTGGCCTCAAACTCAGAAATCTACCTGCCTCTGCCTCCCAAGTGCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCAAACTCAGAAATCTACCTGCCTCTGCCTCCCAAGTGCTGGG  481

seq1  ATTAAAGGTGTACGCCACCACGCCCGGCTTATTATAATTTGTTATGCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGTACGCCACCACGCCCGGCTTATTATAATTTGTTATGCCGT  531

seq1  GTTAGTTGATATCCCTGGGAGGCCTGCTCTTTGTTTTTGAAGGGAAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTGATATCCCTGGGAGGCCTGCTCTTTGTTTTTGAAGGGAAACAG  581

seq1  ATGGGGAATGGATCTGGGGGAGAGAAAGGAGATGGGGGGAGGGCGGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAATGGATCTGGGGGAGAGAAAGGAGATGGGGGGAGGGCGGGAGG  631

seq1  GGGAGGCACTTAGTTGTTAAGACCATTTGGTGCTTTTCTGCAAGACTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCACTTAGTTGTTAAGACCATTTGGTGCTTTTCTGCAAGACTGGA  681

seq1  GTTTGATTCCCAGCATCCATGTCAAGTTGATGGTTCACAATGCCTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCCCAGCATCCATGTCAAGTTGATGGTTCACAATGCCTTTTCT  731

seq1  GGACATGGCCATGCACACACATGCGCACGCGAATGCACAAACACACAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGGCCATGCACACACATGCGCACGCGAATGCACAAACACACAAAT  781

seq1  AAATATAAAATCTAAACACAGAAGGAAATAACTTGATAGAGAAGGCAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAATCTAAACACAGAAGGAAATAACTTGATAGAGAAGGCAAAA  831

seq1  CTATGTTTTAACTATGGTTTAAAATCAGCATCAATGACTGTTTTTAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTTTAACTATGGTTTAAAATCAGCATCAATGACTGTTTTTAAAAA  881

seq1  GGCTTTTCAATTCAAAAACTTGACTTGCAGATTGGTGACTAGTAGGCTCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCAATTCAAAAACTTGACTTGCAGATTGGTGACTAGTAGGCTCG  931

seq1  CTGTGACAACGGAGACAGAGTGCTTCCTGTTGAGTGGACACAGTGGAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACAACGGAGACAGAGTGCTTCCTGTTGAGTGGACACAGTGGAACA  981

seq1  AAGCCCATGGGCAAGTAAAGGCAAGGCAGTAAGAACAGAATTCACACAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATGGGCAAGTAAAGGCAAGGCAGTAAGAACAGAATTCACACAAG  1031

seq1  GGAGAAGCAAGAATAGGGCCCAGACTGTCCACTCAGGCTTGAGAACAGAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCAAGAATAGGGCCCAGACTGTCCACTCAGGCTTGAGAACAGAC  1081

seq1  CACTGAATTC  1110
      ||||||||||
seq2  CACTGAATTC  1091

seq1: chr2_61223408_61224544
seq2: B6Ng01-095N16.g_69_1184

seq1  GAATTCACACAGACTTTGTGCATTTTTCCTTTCCTAAGCACAGTACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGACTTTGTGCATTTTTCCTTTCCTAAGCACAGTACCTTT  50

seq1  GTTATCATCCTCTGAGCTTGTATCTAAATTACAAACCCAGAATCACAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATCCTCTGAGCTTGTATCTAAATTACAAACCCAGAATCACAATA  100

seq1  AAATTTCCCGAGGCCAAGGAATACATTTTATAGAGAAGATAACACGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCCGAGGCCAAGGAATACATTTTATAGAGAAGATAACACGGGAA  150

seq1  GTGCATGATTGGAGAATCCAAGCTCCTATCTTGGAACATGTTATTCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGATTGGAGAATCCAAGCTCCTATCTTGGAACATGTTATTCTGCA  200

seq1  GGAAGCAAATAGCAGCAACTTTGACAGCCCAGAAGCTGGTGTCTATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAATAGCAGCAACTTTGACAGCCCAGAAGCTGGTGTCTATCTCT  250

seq1  GCTTTACAGTTTCTCCCTGCGGTATGATCAAGCATATTTCTCAAACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACAGTTTCTCCCTGCGGTATGATCAAGCATATTTCTCAAACTTTT  300

seq1  ATCCACTGCGAAAGCTTTCTTTATTCTTCTGCTCTTTGAGTGGGGCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGCGAAAGCTTTCTTTATTCTTCTGCTCTTTGAGTGGGGCTGTT  350

seq1  CTGTGTCTTGTGTCAAAGAATCAAATGTTAGGGCCTAGCTAAGGCACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTTGTGTCAAAGAATCAAATGTTAGGGCCTAGCTAAGGCACCAG  400

seq1  CTTGAGGGCCATATCCAATCATGTATGTGCAGCCCGCCTGAGTCTTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGGCCATATCCAATCATGTATGTGCAGCCCGCCTGAGTCTTGCAC  450

seq1  ACAATCTATGAGGAAGCATAATGAGAATATGTGGGCCTGGCAACCATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTATGAGGAAGCATAATGAGAATATGTGGGCCTGGCAACCATGGG  500

seq1  AGAAGGTTGACCTTCCCATAACAGCTCAGCCAAGGACAAGAAAACCGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTTGACCTTCCCATAACAGCTCAGCCAAGGACAAGAAAACCGGGA  550

seq1  ATGCTACACTTGAGGTTTCTCATACTGGTGGATGAAATGGGCTCTCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACACTTGAGGTTTCTCATACTGGTGGATGAAATGGGCTCTCATTA  600

seq1  ATGATGCTTGACGTTAACTCTTAAAATGGTTAAGAAGAGTCAAAATACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTTGACGTTAACTCTTAAAATGGTTAAGAAGAGTCAAAATACAA  650

seq1  GCCACCTAATACTAAAAACATGAGATTGCATATTTAATGCAGCCACCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTAATACTAAAAACATGAGATTGCATATTTAATGCAGCCACCACA  700

seq1  GTGCCAGGGATATAACCAATTTGTTGCTTTCCCTAACCGTTATCTCTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGGGATATAACCAATTTGTTGCTTTCCCTAACCGTTATCTCTTGC  750

seq1  TGTGGTCATGAAATGCACCACATATACAAAAATTATGAGTACTATATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCATGAAATGCACCACATATACAAAAATTATGAGTACTATATGGT  800

seq1  GTATAGATATAGGTTAGAAACAAAATGCCAGAAAAAAAGAATCTAGGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATATAGGTTAGAAACAAAATGCCAGAAAAAAAGAATCTAGGTAT  850

seq1  CTTCCACCTAGTTTGAGGTTAATGGAT-CTATCTTTTAATATTTAATTTT  899
      | ||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  C-TCCACCTAGTTTGAGGTTAATGGATCCTATCTTTT-ATATTTAATTTT  898

seq1  CATGCAG-AAAATCAGGCCTCTTTACA-GTGTAAAACTAAGTATACCTCC  947
      ||||||| ||||||||||||| ||||| |||| |||||||||||||||| 
seq2  CATGCAGAAAAATCAGGCCTC-TTACAGGTGT-AAACTAAGTATACCTCT  946

seq1  TTACATTTTAATTTACTTTTAAGGAAATGTAGCAAGGGAACAAACACAAG  997
      ||||| |||||||||||||| |||||||||||||  || ||||  |||||
seq2  TTACA-TTTAATTTACTTTT-AGGAAATGTAGCA--GGGACAA--ACAAG  990

seq1  TCATCACTGCTTGCTAGATGACCTTGGCAACCCAGAGCCAAATCTCATTG  1047
      ||||||||||||||||||||||| |||| |||||||||  |||||   ||
seq2  TCATCACTGCTTGCTAGATGACC-TGGC-ACCCAGAGC--AATCT--ATG  1034

seq1  GTCCTCAGTTTCCT-CTACTGTCAG-ATAATCACAAAAACTCCTCATCTT  1095
       |||||||  |||| |||||||||| ||||||||  ||||||||||||||
seq2  TTCCTCAG--TCCTCCTACTGTCAGAATAATCAC--AAACTCCTCATCTT  1080

seq1  CCCCACAGGAGCCCCTGTGAAAAGAATAGGAAGATAATAACC  1137
      ||   | |||| ||||||| |||||||| |||||  ||||||
seq2  CC---CGGGAG-CCCTGTG-AAAGAATA-GAAGAATATAACC  1116