BAC Information

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BAC

Clone NameB6Ng01-096J21
Chromosome2 (Build37)
Map Location 113,074,643 - 113,179,893
singlet/doubletdoublet
Overlap gene4930563P21Rik, Fmn1
Upstream geneAgpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream geneGrem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096J21.bB6Ng01-096J21.g
ACCDH907218DH907219
length1,189541
definitionDH907218|Mus musculus domesticus DNA, BAC clone: B6Ng01-096J21, 5' end.DH907219|Mus musculus domesticus DNA, BAC clone: B6Ng01-096J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,178,700 - 113,179,893)(113,074,643 - 113,075,189)
sequence
gaattcttgataatcaacatatattattttcataaagtgggttcagggct
gggaagatggtttacacatgcaagttctatggccatttcctttatactgc
atcttcaggtattttaactacagttagataatgtcaacctaccttaacac
aaagcacttgccatgcaattatggggactagagtttggatctccagaatc
aacataaatgtcaggttggatactgagttcctcctggttccccccccccc
ccccgctcccacccccaacacacactcaaaaggcagagattggatcttca
gagcaatctggccagttagactagcagaaatgatgagtcctggcttcagt
aagagactttgtcttctcataagaatggagcaaccaaggaagacacttct
ggcctccaaaggcagacatacataaatacacacacccatgcaaatatata
tgcacacacatcatagcaaataaaaagcatattcatttagaaaatattta
cgctgctatcgcttgaaacaattcaaggaatcaactcacttcatgtaaaa
atctgcagcccctgtgcttagcactatctatcataatcatattctgagag
ttatttatttttttcaatttttgtgaacaacttattggctgtgaacagct
ttaatcaccgttgactataataaaaaggataaacacttattgcctttact
tttggaaatgccttctgccaatcaaactttgtagcttttatatatgtttt
aatgaaagaagagagattttgtaaaactatgttggtgacgtgctataact
cctacagcatactgtcaaagcagggctggcgttccctagtccatgagtta
gtgttattcacaggggaaaatgatacaaccctttaatctaaagattaaat
gtgccccatcccctctcagtgctgggcctctctccccaactgcagctctt
atggatacctatcccaccttgtcttgaactaacactctaccataaaagga
actcatggccagtccagatagctctaaatataaatgtctctcttattctg
agcaaatctatttccatcaatttctgttctcatactgtactgtatccagc
tcctctccgttcaaccctggtatctcctggccatcttcctggaaatacgt
catcctgacttacgttccacctctcctggacctctgttg
aaagttaacttatggcctcagatggcaataggcaatgactaggattaaac
cagaatttaaaaataaccaaggcaggcggtatcaagcagggaagagtaat
tatgcactcaatggtcaaaccaggaccagaagattgtatgagttcttttt
ttaacaccctacatggactttcttgtctgggatatctttttctcctgaaa
cagttgaagcttctcaggcgtctggactcacacagtcacagttacactac
tctgccctctagtggcctaatgtgaatcctagttcccgataagacatttg
aatttgttttgatctatcagtttgtattaagattttctgacagtttttct
atgcaacaaatacaatttcagaactttcagaacataaacaaacagcacaa
aactatagttccttttctattccttatgaagagtttagaaactagggttc
aggagagtgtctgtgataattcattagagagagagagagagagagagaga
gagagagaaagagagagagagagagagagagagagaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_113178700_113179893
seq2: B6Ng01-096J21.b_51_1239 (reverse)

seq1  CAACAGATGT-CTTGAGAGGTGGGGACGGTAGAGTCAGGATGAGGTATCT  49
      ||||||| || |  |||||||  |||  ||| ||||||||||| |||| |
seq2  CAACAGAGGTCCAGGAGAGGT--GGAACGTA-AGTCAGGATGACGTATTT  47

seq1  CAGGAAAGATGGGCAGGAGATTAACAGGGTTGGACAGGAGAGGAGCTGGA  99
      |  | ||||||| ||||||| || |||||||| || ||||||||||||||
seq2  CCAGGAAGATGGCCAGGAGA-TACCAGGGTTGAAC-GGAGAGGAGCTGGA  95

seq1  TTACAGTACAAGTATGAGAACAAGAAATTGATGGAAATAGATTTGGCTCA  149
       |||||||| ||||||||||| |||||||||||||||||||||| |||||
seq2  -TACAGTAC-AGTATGAGAAC-AGAAATTGATGGAAATAGATTT-GCTCA  141

seq1  GAATAAGAGAGACATTTATATTTAGAGCTATCTGGACT-GCCATGAGGTT  198
      |||||||||||||||||||||||||||||||||||||| ||||||||  |
seq2  GAATAAGAGAGACATTTATATTTAGAGCTATCTGGACTGGCCATGAG--T  189

seq1  TCCTTTTATGGTAGAGTGTTAGTTCAAGACAAGGTGGGATAGGTATCCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTATGGTAGAGTGTTAGTTCAAGACAAGGTGGGATAGGTATCCAT  239

seq1  AAGAGCTGCAGTTGGGGAGAGAGG-CCAGCACTGAGAGGGGATGGGGCAC  297
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGAGCTGCAGTTGGGGAGAGAGGCCCAGCACTGAGAGGGGATGGGGCAC  289

seq1  ATTTAATCTTTAGATTAAA-GGTTGTATCATTTT-CCCTGTGAATAACAC  345
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  ATTTAATCTTTAGATTAAAGGGTTGTATCATTTTCCCCTGTGAATAACAC  339

seq1  TAACTCATGGACTA-GGAACGCCAGCCCTGCTTTGACAGTATGCTGTAGG  394
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAACTCATGGACTAGGGAACGCCAGCCCTGCTTTGACAGTATGCTGTAGG  389

seq1  AGTTATAGCACGTCACCAACATAGTTTTACAAAATCTCTCTTCTTTCATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGCACGTCACCAACATAGTTTTACAAAATCTCTCTTCTTTCATT  439

seq1  AAAACATATATAAAAGCTACAAAGTTTGATTGGCAGAAGGCATTTCCAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATATAAAAGCTACAAAGTTTGATTGGCAGAAGGCATTTCCAAA  489

seq1  AGTAAAGGCAATAAGTGTTTATCCTTTTTATTATAGTCAACGGTGATTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGCAATAAGTGTTTATCCTTTTTATTATAGTCAACGGTGATTAA  539

seq1  AGCTGTTCACAGCCAATAAGTTGTTCACAAAAATTGAAAAAAATAAATAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCACAGCCAATAAGTTGTTCACAAAAATTGAAAAAAATAAATAA  589

seq1  CTCTCAGAATATGATTATGATAGATAGTGCTAAGCACAGGGGCTGCAGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAATATGATTATGATAGATAGTGCTAAGCACAGGGGCTGCAGAT  639

seq1  TTTTACATGAAGTGAGTTGATTCCTTGAATTGTTTCAAGCGATAGCAGCG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATGAAGTGAGTTGATTCCTTGAATTGTTTCAAGCGATAGCAGCG  689

seq1  TAAATATTTTCTAAATGAATATGCTTTTTATTTGCTATGATGTGTGTGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTCTAAATGAATATGCTTTTTATTTGCTATGATGTGTGTGCA  739

seq1  TATATATTTGCATGGGTGTGTGTATTTATGTATGTCTGCCTTTGGAGGCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTGCATGGGTGTGTGTATTTATGTATGTCTGCCTTTGGAGGCC  789

seq1  AGAAGTGTCTTCCTTGGTTGCTCCATTCTTATGAGAAGACAAAGTCTCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTCTTCCTTGGTTGCTCCATTCTTATGAGAAGACAAAGTCTCTT  839

seq1  ACTGAAGCCAGGACTCATCATTTCTGCTAGTCTAACTGGCCAGATTGCTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCCAGGACTCATCATTTCTGCTAGTCTAACTGGCCAGATTGCTC  889

seq1  TGAAGATCCAATCTCTGCCTTTTGAGTGTGTGTTGGGGGTGGGAGCGGGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATCCAATCTCTGCCTTTTGAGTGTGTGTTGGGGGTGGGAGCGGGG  939

seq1  GGGGGGGGGGGAACCAGGAGGAACTCAGTATCCAACCTGACATTTATGTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGAACCAGGAGGAACTCAGTATCCAACCTGACATTTATGTT  989

seq1  GATTCTGGAGATCCAAACTCTAGTCCCCATAATTGCATGGCAAGTGCTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGAGATCCAAACTCTAGTCCCCATAATTGCATGGCAAGTGCTTT  1039

seq1  GTGTTAAGGTAGGTTGACATTATCTAACTGTAGTTAAAATACCTGAAGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAGGTAGGTTGACATTATCTAACTGTAGTTAAAATACCTGAAGAT  1089

seq1  GCAGTATAAAGGAAATGGCCATAGAACTTGCATGTGTAAACCATCTTCCC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATAAAGGAAATGGCCATAGAACTTGCATGTGTAAACCATCTTCCC  1139

seq1  AGCCCTGAACCCACTTTATGAAAATAATATATGTTGATTATCAAGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAACCCACTTTATGAAAATAATATATGTTGATTATCAAGAATTC  1189

seq1: chr2_113074643_113075189
seq2: B6Ng01-096J21.g_64_610

seq1  GAATTCAAAGTTAACTTATGGCCTCAGATGGCAATAGGCAATGACTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTTAACTTATGGCCTCAGATGGCAATAGGCAATGACTAGGA  50

seq1  TTAAACCAGAATTTAAAAATAACCAAGGCAGGCGGTATCAAGCAGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCAGAATTTAAAAATAACCAAGGCAGGCGGTATCAAGCAGGGAAG  100

seq1  AGTAATTATGCACTCAATGGTCAAACCAGGACCAGAAGATTGTATGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTATGCACTCAATGGTCAAACCAGGACCAGAAGATTGTATGAGTT  150

seq1  CTTTTTTTAACACCCTACATGGACTTTCTTGTCTGGGATATCTTTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTAACACCCTACATGGACTTTCTTGTCTGGGATATCTTTTTCTC  200

seq1  CTGAAACAGTTGAAGCTTCTCAGGCGTCTGGACTCACACAGTCACAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAGTTGAAGCTTCTCAGGCGTCTGGACTCACACAGTCACAGTTA  250

seq1  CACTACTCTGCCCTCTAGTGGCCTAATGTGAATCCTAGTTCCCGATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTCTGCCCTCTAGTGGCCTAATGTGAATCCTAGTTCCCGATAAGA  300

seq1  CATTTGAATTTGTTTTGATCTATCAGTTTGTATTAAGATTTTCTGACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAATTTGTTTTGATCTATCAGTTTGTATTAAGATTTTCTGACAGT  350

seq1  TTTTCTATGCAACAAATACAATTTCAGAACTTTCAGAACATAAACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATGCAACAAATACAATTTCAGAACTTTCAGAACATAAACAAACA  400

seq1  GCACAAAACTATAGTTCCTTTTCTATTCCTTATGAAGAGTTTAGAAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAACTATAGTTCCTTTTCTATTCCTTATGAAGAGTTTAGAAACTA  450

seq1  GGGTTCAGGAGAGTGTCTGTGATAATTCATTAGAGAGAGAGAGAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGGAGAGTGTCTGTGATAATTCATTAGAGAGAGAGAGAGAGAGA  500

seq1  GAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGA  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGA  547