BAC Information

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BAC

Clone NameB6Ng01-096L03
Chromosome5 (Build37)2 (Build37)
Map Location 18,084,511 - 18,084,577109,108,454 - 109,109,528
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096L03.bB6Ng01-096L03.g
ACCDH907273DH907274
length9721,058
definitionDH907273|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L03, 5' end.DH907274|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,577)(109,108,454 - 109,109,528)
sequence
gaattcaagaagctgttctccagaaaatcaaataaccccaataaaaatga
ggtacagagctaaacaaagaattctcaactgaggaatactgaatggctga
gaagcacctgaaaaaatgttcaacatccttaatcgtcatggaaatgcaaa
tcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatc
aaaatttcaggtgacagcagatgctggtgaggatgtggagaaagaggaac
actcctacattgctggtgggattgcaagcttgtacaaccactctggaaat
cagtctagagttccttcagaaaattggacatagtactactggaggatcca
gcaatacctctcctgggcatatatccagaagatgttccaactagtaataa
gaacacatgcttcactatgttcatagcagccttatttataatggccagaa
gctggaaagaacccagatgtccctcaacagaggaatgtatacagaaaatg
tggtacatttacacaatggagtactactcagcaattaaaaacaatgaatt
tatgaaattcttatgcaaatggatggatctggagggtatcattctaggtg
aggtaacataatcacaaaagaactcatatgatatgcgctcactgataagt
gcatattagcccagaaacttagaatactcaagatacaatttgcaaaaccc
aagaaaatcaagaagaaggaagtccaatgtgtggatacttcattccacct
tagaacagggaacaaaatacccaggtaaggagttatagagacaaagtttg
gagatgaaacagaaggaaaggacaatacagagactgccccatctggggat
ccataccataatcaaccaccaaacacaaacaaaattgcatatcccagcaa
gattttgctgacaggaccctgatatagctgacttttgtgaagttatacca
gtgcctggaaaatacagatgct
gaattccccagtcccataattggtcactaaaatttcattccttttcgtgt
agtatgtttaaattattagcaatctttcatttgagaatcttccactttaa
atggaaaataaacatcacagagaaaaatgcccagatgcttttccttcaag
taccgaaggctgtgacagcaagaaggagcttgttttgtttacccctgggt
tcttacagttgctcattcttagaggacaaggacagtggtgcagccaggcc
ggcggctgcacttctgttttctttagaaagctgcattttagatagaacaa
ctatcaggagttagaaatttcatcgttctcccccccccctaaatgtagct
tctctagggcatttcttttcctcattgcatctacctttgaagaaggtttt
tgtcttaaaaatctcatgtagcacattaagtggctaatgtattggattgt
tttctttttcttttttttttttttggtttttcgagacagggtttctctgt
atagtcttggctgccctggaactcactttgtagaccaggctggccctgaa
ctcagaaatccacctgtctctgcctcccaagtgctgggattaaaggtgtg
caccaccaccgcccggcggattgttttctgagtgtgacactgctgctgct
gctgtgcaggtggttgtctctcctggctcgcggagtaaaggttagctgta
accttctaagaacagctctgaactttgaggttatagatatctgtgcagtt
cctgctccccatttcaagctgactgcctggtgtcatggtgtgtacagttg
tctgcacttcccagggtttatacctactggaatccagttgttccacacag
tagtgctttctgagtctggccatcctcttgcttttccctgtgtcttttgt
ggatatcttgatcatatttcaaaatataagacttttagttaacctctgcc
aagtgtctgaaagctagggactatcttctctccctccctcccttccttct
tcccttctttcctcctcgcccattctttttccctccttccctcccttctc
ccttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084577
seq2: B6Ng01-096L03.b_427_493 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||| |||||||||||||||||||||||||||||| ||||||||| 
seq2  CTTCTGGCCATTATAAATAAGGCTGCTATGAACATAGTGAAGCATGTGTT  50

seq1  CTTCTTACCAGTTGGAA  67
      ||| |||| ||||||||
seq2  CTTATTACTAGTTGGAA  67

seq1: chr2_109108454_109109528
seq2: B6Ng01-096L03.g_67_1124 (reverse)

seq1  AGAGAAGGGAGGGAGGGAGGGAGGGAAGGGAGGGAGGGAGGGAGAAAGGA  50
      ||||||||||              ||||||||||| ||||||| |||| |
seq2  AGAGAAGGGA--------------GAAGGGAGGGAAGGAGGGAAAAAGAA  36

seq1  ATGGCGAGGAGG-AAGAAGGGAAGAAGGAAGGGAGGGAGGGAGAGAAGAT  99
        |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGGCGAGGAGGAAAGAAGGGAAGAAGGAAGGGAGGGAGGGAGAGAAGAT  86

seq1  AGTCCCTAGCTTTTCCAAGACACTTGGCAGAGGTTAACTAAAAGTCTTAT  149
      |||||||||||||    |||||||||||||||||||||||||||||||||
seq2  AGTCCCTAGCTTT---CAGACACTTGGCAGAGGTTAACTAAAAGTCTTAT  133

seq1  ATTTTGAAATATGATCAAGATATTCCACAAAAGACACAGGGAAAAGCAAG  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTTTGAAATATGATCAAGATA-TCCACAAAAGACACAGGGAAAAGCAAG  182

seq1  AGGATGGCCAGACTCAGAAAGCACTACTGTGTGGAACAACTGGATTCCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGCCAGACTCAGAAAGCACTACTGTGTGGAACAACTGGATTCCAG  232

seq1  TAGGTATAAACCCTGGGAAGTGCAGACAACTGTACACACCATGACACCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATAAACCCTGGGAAGTGCAGACAACTGTACACACCATGACACCAG  282

seq1  GCAGTCAGCTTGAAATGGGGAGCAGGAACTGCACAGATATCTATAACCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGCTTGAAATGGGGAGCAGGAACTGCACAGATATCTATAACCTC  332

seq1  AAAGTTCAGAGCTGTTCTTAGAAGGTTACAGCTAACCTTTACTCCGCGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAGAGCTGTTCTTAGAAGGTTACAGCTAACCTTTACTCCGCGAG  382

seq1  CCAGGAGAGACAACCACCTGCACAGCAGCAGCAGCAGTGTCACACTCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAGACAACCACCTGCACAGCAGCAGCAGCAGTGTCACACTCAGA  432

seq1  AAACAATCCGCCGGGCGGTGGTGGTGCACACCTTTAATCCCAGCACTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCCGCCGGGCGGTGGTGGTGCACACCTTTAATCCCAGCACTTGG  482

seq1  GAGGCAGAGACAGGTGGATTTCTGAGTTCAGGGCCAGCCTGGTCTACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGACAGGTGGATTTCTGAGTTCAGGGCCAGCCTGGTCTACAAA  532

seq1  GTGAGTTCCAGGGCAGCCAAGACTATACAGAGAAACCCTGTCTCGAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGGCAGCCAAGACTATACAGAGAAACCCTGTCTCGAAAAA  582

seq1  CCAAAAAAAAAAAAAAGAAAAAGAAAACAATCCAATACATTAGCCACTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAAAAAAAGAAAAAGAAAACAATCCAATACATTAGCCACTTA  632

seq1  ATGTGCTACATGAGATTTTTAAGACAAAAACCTTCTTCAAAGGTAGATGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTACATGAGATTTTTAAGACAAAAACCTTCTTCAAAGGTAGATGC  682

seq1  AATGAGGAAAAGAAATGCCCTAGAGAAGCTACATTTAGGGGGGGGGGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAAAAGAAATGCCCTAGAGAAGCTACATTTAGGGGGGGGGGAGA  732

seq1  ACGATGAAATTTCTAACTCCTGATAGTTGTTCTATCTAAAATGCAGCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGAAATTTCTAACTCCTGATAGTTGTTCTATCTAAAATGCAGCTTT  782

seq1  CTAAAGAAAACAGAAGTGCAGCCGCCGGCCTGGCTGCACCACTGTCCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAAACAGAAGTGCAGCCGCCGGCCTGGCTGCACCACTGTCCTTG  832

seq1  TCCTCTAAGAATGAGCAACTGTAAGAACCCAGGGGTAAACAAAACAAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAAGAATGAGCAACTGTAAGAACCCAGGGGTAAACAAAACAAGCT  882

seq1  CCTTCTTGCTGTCACAGCCTTCGGTACTTGAAGGAAAAGCATCTGGGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGCTGTCACAGCCTTCGGTACTTGAAGGAAAAGCATCTGGGCAT  932

seq1  TTTTCTCTGTGATGTTTATTTTCCATTTAAAGTGGAAGATTCTCAAATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGTGATGTTTATTTTCCATTTAAAGTGGAAGATTCTCAAATGA  982

seq1  AAGATTGCTAATAATTTAAACATACTACACGAAAAGGAATGAAATTTTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGCTAATAATTTAAACATACTACACGAAAAGGAATGAAATTTTAG  1032

seq1  TGACCAATTATGGGACTGGGGAATTC  1075
      ||||||||||||||||||||||||||
seq2  TGACCAATTATGGGACTGGGGAATTC  1058