BAC Information

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BAC

Clone NameB6Ng01-096O20
Chromosome2 (Build37)
Map Location 152,695,622 - 152,838,595
singlet/doubletdoublet
Overlap geneTpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1
Upstream geneRspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1
Downstream geneXkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096O20.bB6Ng01-096O20.g
ACCDH907434DH907435
length1,0661,075
definitionDH907434|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O20, 5' end.DH907435|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,695,622 - 152,696,668)(152,837,539 - 152,838,595)
sequence
gaattcagtccatggtaaatgtgctctttttcccgagacagggtctgtgt
ggagctcaggttgccctcagacttgtaatcttcttgcccctgcctctcac
atgctgattgtgggcagcgccatgcctaactatacttttcttttgaatat
gcctttaggattcatttgctttttttttttttccaatgctaggggttaaa
tctaggagttcatgcttaacaagtgctctaccagagttatgcactatcct
gagcacaacatttaatttttttaaggtttatttattatatataagttcac
tgtagctgtcttcacacaccccagaagagggcatcagacctcattatggg
tggttgtgagccaccatgtggttgctgggatttgaactctggaccttggg
aagagcagtcagtgctcttacctgctgagccatcttgctgctccctgagc
actacatttttaaaagaattttgcacaaaggttcatgaatagtgttacat
tataattttctcttcttgtgattttttttttccctgctggtgtttgtctt
ccttttttctttttgctttgagcatggcagcaaatgcttccctactggac
agcactccagcccccatttatgtgattataagcacgtaacttttattttt
ttttaattttttaaaataattatttatatatatatatgagtgtagctgtc
ttcagacaccctagaagagtgcatcaaatcccattacaggtggttgtaag
ccaccgtgtggttggtaagaatttgaactcaggacctctgaaagagcagt
cagtgctctcaactgctgagccatctctccatcccagcacatagcttttt
ataaaacaggccttctgtataactttacctgagttaaggttaccatgcat
aggagtaatattttgtatgtgtgtgatacatattgatcttcattttgaat
tctgtagtcacacacacatgctaatgcatatctgcctaaattatatacaa
ttgtgcatatatgtaatataatttctgattcttgaaattgagtactgatt
agctccatttcacatt
gaattccaaaaatcacacactggaagaaactatctgcagctggcaaaatc
ataccagagcatgaggcaaatcatagtcagctgctgtggacagtctgaag
cagccccacatcgcacacctgggattgtaatgaaaacattttcttacagt
atttctgtgttttgttttttaaagaaacaaaaatgcccaatataatgtca
atataatttttcatgctagttcttagcagtatgttgaaaaacccaacctt
gttcattccccacctttgctataacatgagtcccacaagagcatggactg
ttttgttctgctatgttcttagcacaaatgtgccagtcaggtgataggtg
cttcaaaaagaaaaaagcaaaacgtgataaagaaatgtctgttcgctgtt
tcagaagatgtgatggtttgctttgggaacatgttcatcaaaatgcctca
ccctaagacgaaggaaatgatccagaaaggtaaggtgtcctggggctgga
ccaaggacacagctactttccccagcactcctgggtcataatccagcaat
gaaaaccaaactgtgtatcaggctggggaaagacaaagggccttttccat
atgaggcttttgctttctgtttgaaaataaggtcactctctaccaaaatc
tcattggccaaggccatccatagctgtaaagggtcatggataagtgaggt
ttttcatgagcctgtgtgtctgtctgtctgtgtggtgtggtgtgtgtgtc
aatgggtatgtacatgcagaggtcagaataggatgtcagtatcctcctct
agcatgtttccaccctacttactaccttgaagtggagttgcccaaccctc
ttggctaccttggttggccagcaacgctctctgcatctgccttctctctt
gtcccctagtgctgggaattataggtacactcagccatgtgtttctgaga
tttcagtcttcacaactttgcagagcaagcaactcttgccttgaactgag
ccattcacccagtaacccgaagggagcttttctattttctttatttttta
ttttacttttaattttgtttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152695622_152696668
seq2: B6Ng01-096O20.b_51_1102

seq1  GAATTCAGTCCATGGTAAATGTGCTCTTTTTCCCGAGACAGGGTCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCATGGTAAATGTGCTCTTTTTCCCGAGACAGGGTCTGTGT  50

seq1  GGAGCTCAGGTTGCCCTCAGACTTGTAATCTTCTTGCCCCTGCCTCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCAGGTTGCCCTCAGACTTGTAATCTTCTTGCCCCTGCCTCTCAC  100

seq1  ATGCTGATTGTGGGCAGCGCCATGCCTAACTATACTTTTCTTTTGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATTGTGGGCAGCGCCATGCCTAACTATACTTTTCTTTTGAATAT  150

seq1  GCCTTTAGGATTCATTTGCTTTTTTTTTTTTTCCAATGCTAGGGGTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGGATTCATTTGCTTTTTTTTTTTTTCCAATGCTAGGGGTTAAA  200

seq1  TCTAGGAGTTCATGCTTAACAAGTGCTCTACCAGAGTTATGCACTATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAGTTCATGCTTAACAAGTGCTCTACCAGAGTTATGCACTATCCT  250

seq1  GAGCACAACATTTAATTTTTTTAAGGTTTATTTATTATATATAAGTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAACATTTAATTTTTTTAAGGTTTATTTATTATATATAAGTTCAC  300

seq1  TGTAGCTGTCTTCACACACCCCAGAAGAGGGCATCAGACCTCATTATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGTCTTCACACACCCCAGAAGAGGGCATCAGACCTCATTATGGG  350

seq1  TGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTGGG  400

seq1  AAGAGCAGTCAGTGCTCTTACCTGCTGAGCCATCTTGCTGCTCCCTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTCAGTGCTCTTACCTGCTGAGCCATCTTGCTGCTCCCTGAGC  450

seq1  ACTACATTTTTAAAAGAATTTTGCACAAAGGTTCATGAATAGTGTTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATTTTTAAAAGAATTTTGCACAAAGGTTCATGAATAGTGTTACAT  500

seq1  TATAATTTTCTCTTCTTGTGATTTTTTTTTTCCCTGCTGGTGTTTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTCTCTTCTTGTGATTTTTTTTTTCCCTGCTGGTGTTTGTCTT  550

seq1  CCTTTTTTCTTTTTGCTTTGAGCATGGCAGCAAATGCTTCCCTACTGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTCTTTTTGCTTTGAGCATGGCAGCAAATGCTTCCCTACTGGAC  600

seq1  AGCACTCCAGCCCCCATTTATGTGATTATAAGCACGTAACTTTTATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCCAGCCCCCATTTATGTGATTATAAGCACGTAACTTTTATTTTT  650

seq1  TTTTAATTTTTTAAAATAATTATTTATATATATATATGAGTGTAGCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTTTAAAATAATTATTTATATATATATATGAGTGTAGCTGTC  700

seq1  TTCAGACACCCTAGAAGAGTGCATCAAATCCCATTACAGGTGGTTGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACCCTAGAAGAGTGCATCAAATCCCATTACAGGTGGTTGTAAG  750

seq1  CCACCGTGTGGTTGGTAAGAA-TTGAACTCAGGACCTCTGAAAGAGCAGT  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCACCGTGTGGTTGGTAAGAATTTGAACTCAGGACCTCTGAAAGAGCAGT  800

seq1  CAGTGCTCTCAACTGCTGAGCCATCTCTCCATCCCAGCACATAGC-TTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGTGCTCTCAACTGCTGAGCCATCTCTCCATCCCAGCACATAGCTTTTT  850

seq1  AT-AAACAGGCCTTCTGTATAACTTTACCTGAGTTAAGGTTACCATGCAT  897
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGGCCTTCTGTATAACTTTACCTGAGTTAAGGTTACCATGCAT  900

seq1  AGGAGTAATA-TTTGTATGTGTGTGATACATA-TGATCTTCATTTTGAAT  945
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  AGGAGTAATATTTTGTATGTGTGTGATACATATTGATCTTCATTTTGAAT  950

seq1  TCTGTAGTCACACACACATGCT-ATGCATATCTGCCTAAA-TATATACAA  993
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TCTGTAGTCACACACACATGCTAATGCATATCTGCCTAAATTATATACAA  1000

seq1  ATGTGCATATATGT-ATATAATTTCTGATTTTCTTGAAATTTGAGTACTG  1042
       ||||||||||||| |||||||||||||  ||||||||| ||||||||||
seq2  TTGTGCATATATGTAATATAATTTCTGA--TTCTTGAAA-TTGAGTACTG  1047

seq1  ATTAG  1047
      |||||
seq2  ATTAG  1052

seq1: chr2_152837539_152838595
seq2: B6Ng01-096O20.g_68_1142 (reverse)

seq1  AAAAAAAACAAA---TAAAGTAAAAT--AAAATAAAGAAAA-AGAAAAGC  44
      ||||||||||||    ||||||||||  ||||||||||||| ||||||||
seq2  AAAAAAAACAAAATTAAAAGTAAAATAAAAAATAAAGAAAATAGAAAAGC  50

seq1  TCCC-TCGGG-TACTGGGGTGATGGCTCAGT--CAGGC-AGAG-TGCTTG  88
      |||| ||||| |||||||   ||||||||||   |||| |||| ||||||
seq2  TCCCTTCGGGTTACTGGGTGAATGGCTCAGTTCAAGGCAAGAGTTGCTTG  100

seq1  CTCTGCAA--GTGTGAGGACTG-AATCTCCAGAACACATGGCTGAGTGTA  135
      ||||||||   ||||| ||||| ||||||   ||||||||||||||||||
seq2  CTCTGCAAAGTTGTGAAGACTGAAATCTCAGAAACACATGGCTGAGTGTA  150

seq1  CCTATAA-TCCCAGCACTAGGGGAC-AGAGAG-AGGCAGATGCAGAGAGC  182
      ||||||| ||||||||||||||||| |||||| |||||||||||||||||
seq2  CCTATAATTCCCAGCACTAGGGGACAAGAGAGAAGGCAGATGCAGAGAGC  200

seq1  GTTGCTGGCCAACCAAGGTAGCCAAAGAGGTTGGGCAACTCCACTTCAAG  232
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  GTTGCTGGCCAACCAAGGTAGCCAAGAGGGTTGGGCAACTCCACTTCAAG  250

seq1  GTAGTAAGTAGGGTGG-AACATGCTAGAGGAGGATACCTGACATCCTATT  281
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  GTAGTAAGTAGGGTGGAAACATGCTAGAGGAGGATA-CTGACATCCTATT  299

seq1  CTGACCTCTGCATGTACATACCCATTGACACACACACCACACCACACAGA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTGCATGTACATACCCATTGACACACACACCACACCACACAGA  349

seq1  CAGACAGACACACAGGCTCATGAAAAACCTCACTTATCCATGACCCTTTA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACACACAGGCTCATGAAAAACCTCACTTATCCATGACCCTTTA  399

seq1  CAGCTATGGATGGCCTTGGCCAATGAGATTTTGGTAGAGAGTGACCTTAT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATGGATGGCCTTGGCCAATGAGATTTTGGTAGAGAGTGACCTTAT  449

seq1  TTTCAAACAGAAAGCAAAAGCCTCATATGGAAAAGGCCCTTTGTCTTTCC  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACAGAAAGCAAAAGCCTCATATGGAAAAGGCCCTTTGTCTTTCC  499

seq1  CCAGCCTGATACACAGTTTGGTTTTCATTGCTGGATTATGACCCAGGAGT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGATACACAGTTTGGTTTTCATTGCTGGATTATGACCCAGGAGT  549

seq1  GCTGGGGAAAGTAGCTGTGTCCTTGGTCCAGCCCCAGGACACCTTACCTT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGAAAGTAGCTGTGTCCTTGGTCCAGCCCCAGGACACCTTACCTT  599

seq1  TCTGGATCATTTCCTTCGTCTTAGGGTGAGGCATTTTGATGAACATGTTC  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATCATTTCCTTCGTCTTAGGGTGAGGCATTTTGATGAACATGTTC  649

seq1  CCAAAGCAAACCATCACATCTTCTGAAACAGCGAACAGACATTTCTTTAT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAAACCATCACATCTTCTGAAACAGCGAACAGACATTTCTTTAT  699

seq1  CACGTTTTGCTTTTTTCTTTTTGAAGCACCTATCACCTGACTGGCACATT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTTGCTTTTTTCTTTTTGAAGCACCTATCACCTGACTGGCACATT  749

seq1  TGTGCTAAGAACATAGCAGAACAAAACAGTCCATGCTCTTGTGGGACTCA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAAGAACATAGCAGAACAAAACAGTCCATGCTCTTGTGGGACTCA  799

seq1  TGTTATAGCAAAGGTGGGGAATGAACAAGGTTGGGTTTTTCAACATACTG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAGCAAAGGTGGGGAATGAACAAGGTTGGGTTTTTCAACATACTG  849

seq1  CTAAGAACTAGCATGAAAAATTATATTGACATTATATTGGGCATTTTTGT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACTAGCATGAAAAATTATATTGACATTATATTGGGCATTTTTGT  899

seq1  TTCTTTAAAAAACAAAACACAGAAATACTGTAAGAAAATGTTTTCATTAC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAAAACAAAACACAGAAATACTGTAAGAAAATGTTTTCATTAC  949

seq1  AATCCCAGGTGTGCGATGTGGGGCTGCTTCAGACTGTCCACAGCAGCTGA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGGTGTGCGATGTGGGGCTGCTTCAGACTGTCCACAGCAGCTGA  999

seq1  CTATGATTTGCCTCATGCTCTGGTATGATTTTGCCAGCTGCAGATAGTTT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATTTGCCTCATGCTCTGGTATGATTTTGCCAGCTGCAGATAGTTT  1049

seq1  CTTCCAGTGTGTGATTTTTGGAATTC  1057
      ||||||||||||||||||||||||||
seq2  CTTCCAGTGTGTGATTTTTGGAATTC  1075