BAC Information

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BAC

Clone NameB6Ng01-097C05
Chromosome2 (Build37)
Map Location 3,801,459 - 3,911,285
singlet/doubletdoublet
Overlap genenone
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495, 3110001A13Rik, LOC100040257
Downstream geneLOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097C05.bB6Ng01-097C05.g
ACCDH907589DH907590
length1,0801,068
definitionDH907589|Mus musculus domesticus DNA, BAC clone: B6Ng01-097C05, 5' end.DH907590|Mus musculus domesticus DNA, BAC clone: B6Ng01-097C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,801,459 - 3,802,546)(3,910,207 - 3,911,285)
sequence
gaattctgttttctcacccactgggtcatctctcctgctatacatacaca
cgtgctcgcgtgcgcgtgcacacacacatgttgagtttgtatatatgcac
atgtgtttaaaattgtgcatatgtgcatgtgttcatgtgtgtaggggtgt
acatgtgatgatcagaggcaagtcttgagtattaccctcagatacacagt
ccactttctttgagactgagtctcttattgatctggggctcactaattaa
tctcactgatgaataactaagccccacggatcctcctggcatctttgcct
ctccagtgctgagattacaaatgcgtgctattattcccaacatttcactt
tggttttcagaataccactcaagtctttaagcttttaacttaaacaatgt
gacaccagagccacgcctcagcccacctgtattttgtcttaattctctct
tcctaaaatgtcaccccttctaagcaagctgctactgtgagcccattgct
atatttctgtaatggactaaaaatagtaggagggttgggtctgcctgatc
catacaccaccttgagaaatagttccacactggctacagcagggtttctt
aagcctgttctacacttcctcgctcagccaaggagtcatcttataacccg
tggtatataggtgtgtaaaataggcatactaatcaaatatttactgacag
tcacaaaaattaaaaaacattgtgtgtgaatattatatgtgtgtgtgtgt
gtatacatacatacatatatatatacacacatatatgattttgccatgta
gtggagttcaaacttgtttacagttagcgtactaatgaaatggctgccct
tgtttattttcccagaaatcattaaatcttggctgcatatttgattctgc
aggacacagaacatcttcaatttgttcgagttgatcatattttgacttca
taattgctagtgctataatgctgtttacagaagcatgtagtataaagtgg
caggagcatgtctcaggcatttcagaaattgtggaaattctatgctaatc
ccaagccaaatccattattgagtttttttt
gaattctcccatgactgaacatctatgtggtttttactcgttgtttgcta
tttcaggtgcttgtaaacaatttatctttttataggatgcatgtgtcttt
gcctaatatattttcatattaaaatgtaaaatttagtcactgttcagagt
ttgggctttgggtaagtgactgggtctgactgtatcaatgagctagtccg
tgagttcatcttctgatgagctattggaaagtaatagaaattcagggaac
gatatctacttgagaggaagtggtcccctagtgtgcctgtgtggcctggc
tcttgtctacaaaacattttatttatttgctaagattttatcttctcttc
cttctccttccagtttcttcatataaagctaagacattataatgatacct
aaagtatttccctactgaagactccttcagttctctcaggctgccacttc
ttcctcatgatgcacctgttttgaaagatacatcaacttctcgtgggctg
gggtttgccacttactggagacatcaacttaatttccatgcatttaaaaa
ataaataatgctgagtatttcttcttttgtgggcttataagtgtatgcat
atttgtctgttggagacttggtaattttagagcttttatgagttcttcat
accatttttacaataaatccccttcccattatattaatagatttgaaaat
gagcagagaccctaagcaacacttagtagggttattaatatgctgcttgg
acctcctgcaattactcaaaacaaactattttatttgctaatattttatc
tttatgacatctgcgcatatctttcaaaagtattggagaatcttccctat
ttctttactcattgctgggagaaaacataagacaaagcaaatgagggaag
tgtgttgttgttttttgttgttgttttctgaaatggcgcttatacacagg
agagcccaagcatactttatagaacatcatagataatcagttaaaagaaa
gaagaggataaaaaatctgcacagaggcgtatggtcaccaggcagggatg
acatggtgggggcatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_3801459_3802546
seq2: B6Ng01-097C05.b_46_1125

seq1  GAATTCTGTTTTCTCACCCACTGGGTCATCTCTCCTGCTATACATACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTCTCACCCACTGGGTCATCTCTCCTGCTATACATACACA  50

seq1  CGTGCTCGCGTGCGCGTGCACACACACATGTTGAGTTTGTATATATGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTCGCGTGCGCGTGCACACACACATGTTGAGTTTGTATATATGCAC  100

seq1  ATGTGTTTAAAATTGTGCATATGTGCATGTGTTCATGTGTGTAGGGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTAAAATTGTGCATATGTGCATGTGTTCATGTGTGTAGGGGTGT  150

seq1  ACATGTGATGATCAGAGGCAAGTCTTGAGTATTACCCTCAGATACACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGATGATCAGAGGCAAGTCTTGAGTATTACCCTCAGATACACAGT  200

seq1  CCACTTTCTTTGAGACTGAGTCTCTTATTGATCTGGGGCTCACTAATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCTTTGAGACTGAGTCTCTTATTGATCTGGGGCTCACTAATTAA  250

seq1  TCTCACTGATGAATAACTAAGCCCCACGGATCCTCCTGGCATCTTTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGATGAATAACTAAGCCCCACGGATCCTCCTGGCATCTTTGCCT  300

seq1  CTCCAGTGCTGAGATTACAAATGCGTGCTATTATTCCCAACATTTCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGCTGAGATTACAAATGCGTGCTATTATTCCCAACATTTCACTT  350

seq1  TGGTTTTCAGAATACCACTCAAGTCTTTAAGCTTTTAACTTAAACAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCAGAATACCACTCAAGTCTTTAAGCTTTTAACTTAAACAATGT  400

seq1  GACACCAGAGCCACGCCTCAGCCCACCTGTATTTTGTCTTAATTCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGAGCCACGCCTCAGCCCACCTGTATTTTGTCTTAATTCTCTCT  450

seq1  TCCTAAAATGTCACCCCTTCTAAGCAAGCTGCTACTGTGAGCCCATTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAATGTCACCCCTTCTAAGCAAGCTGCTACTGTGAGCCCATTGCT  500

seq1  ATATTTCTGTAATGGACTAAAAATAGTAGGAGGGTTGGGTCTGCCTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGTAATGGACTAAAAATAGTAGGAGGGTTGGGTCTGCCTGATC  550

seq1  CATACACCACCTTGAGAAATAGTTCCACACTGGCTACAGCAGGGTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACCACCTTGAGAAATAGTTCCACACTGGCTACAGCAGGGTTTCTT  600

seq1  AAGCCTGTTCTACACTTCCTCGCTCAGCCAAGGAGTCATCTTATAACCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTTCTACACTTCCTCGCTCAGCCAAGGAGTCATCTTATAACCCG  650

seq1  TGGTATATAGGTGTGTAAAATAGGCATACTAATCAAATATTTACTGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATAGGTGTGTAAAATAGGCATACTAATCAAATATTTACTGACAG  700

seq1  TCACAAAAATTAAAAAACATTGTGTGTGAATATTATATGTGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAATTAAAAAACATTGTGTGTGAATATTATATGTGTGTGTGTGT  750

seq1  GTATACATACATACATATATATATACACACATATATGATTTTGCCATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATACATACATATATATATACACACATATATGATTTTGCCATGTA  800

seq1  GTGGAGTTCAAACTTGTTTACAGTTAGCGTACTAATGAAATGGCTGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTCAAACTTGTTTACAGTTAGCGTACTAATGAAATGGCTGCCCT  850

seq1  TGTTTATTTTCCCAGAAATCATTAAATCTTGGCTGCATATTTGATTCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTTCCCAGAAATCATTAAATCTTGGCTGCATATTTGATTCTGC  900

seq1  AGGACACAGAACATCTTCAATGTTGTTCCGAGTTGATCAATATTTTGACT  950
      ||||||||||||||||||||| ||||| |||||||||| |||||||||||
seq2  AGGACACAGAACATCTTCAAT-TTGTT-CGAGTTGATC-ATATTTTGACT  947

seq1  TCATAATTGCTAGTGCTATAATGCTGTTTCACAGAAGCATGTAGTATAAA  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCATAATTGCTAGTGCTATAATGCTGTTT-ACAGAAGCATGTAGTATAAA  996

seq1  GTGGCAGGAGCATGTCTCAGGGCATTTCAGAAATTGTTGGAAATTCTATG  1050
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  GTGGCAGGAGCATGTCTCA-GGCATTTCAGAAATTG-TGGAAATTCTATG  1044

seq1  CTAATCCCAAGCCAAAATCCATTAATTGAGTTTTTTTT  1088
      ||||||||||||| ||||||||| ||||||||||||||
seq2  CTAATCCCAAGCC-AAATCCATT-ATTGAGTTTTTTTT  1080

seq1: chr2_3910207_3911285
seq2: B6Ng01-097C05.g_67_1133 (reverse)

seq1  TCATG-CACCACCATGTCATTCCTGCCTTGGTGGAACATACGCTCCTTGT  49
      ||||| | |||||||||||| |||||| |||| || ||||||| |  |||
seq2  TCATGCCCCCACCATGTCATCCCTGCC-TGGT-GACCATACGC-CTCTGT  47

seq1  GCAGATCTTTTATTCCTCTTTCTTTTCTTTTTACTGATTATCTATGATGT  99
      |||||| ||||| |||||||   |||||||| ||||||||||||||||||
seq2  GCAGATTTTTTA-TCCTCTT--CTTTCTTTTAACTGATTATCTATGATGT  94

seq1  ACTATAAAGTATGCCTTGGGCTCTCCTGTGTATAAGCGCCATTTTCAGAA  149
       |||||||||||| ||||||||||||||||||||||||||| |||||| |
seq2  TCTATAAAGTATG-CTTGGGCTCTCCTGTGTATAAGCGCCA-TTTCAG-A  141

seq1  AAACAACAACAAAAAACCAACAACAACAC-CTTCCCTCATTTGCTTTGTC  198
      ||||||||||||||    ||||||||||| ||||||||||||||||||||
seq2  AAACAACAACAAAA----AACAACAACACACTTCCCTCATTTGCTTTGTC  187

seq1  TTATGTTTTCTCCCAGCAATGAGTAAAGGAAATAGGGAAGATTCTCCAAT  248
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTATGTTTTCTCCCAGCAATGAGTAAA-GAAATAGGGAAGATTCTCCAAT  236

seq1  ACTTTTGAAAGATATGCGCAGATGTCATAAAGATAAAATATTAGCAAATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGAAAGATATGCGCAGATGTCATAAAGATAAAATATTAGCAAATA  286

seq1  AAATAGTTTGTTTTGAGTAATTGCAGGAGGTCCAAGCAGCATATTAATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTTGTTTTGAGTAATTGCAGGAGGTCCAAGCAGCATATTAATAA  336

seq1  CCCTACTAAGTGTTGCTTAGGGTCTCTGCTCATTTTCAAATCTATTAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTAAGTGTTGCTTAGGGTCTCTGCTCATTTTCAAATCTATTAATA  386

seq1  TAATGGGAAGGGGATTTATTGTAAAAATGGTATGAAGAACTCATAAAAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGAAGGGGATTTATTGTAAAAATGGTATGAAGAACTCATAAAAGC  436

seq1  TCTAAAATTACCAAGTCTCCAACAGACAAATATGCATACACTTATAAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTACCAAGTCTCCAACAGACAAATATGCATACACTTATAAGCC  486

seq1  CACAAAAGAAGAAATACTCAGCATTATTTATTTTTTAAATGCATGGAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGAAGAAATACTCAGCATTATTTATTTTTTAAATGCATGGAAAT  536

seq1  TAAGTTGATGTCTCCAGTAAGTGGCAAACCCCAGCCCACGAGAAGTTGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGATGTCTCCAGTAAGTGGCAAACCCCAGCCCACGAGAAGTTGAT  586

seq1  GTATCTTTCAAAACAGGTGCATCATGAGGAAGAAGTGGCAGCCTGAGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTCAAAACAGGTGCATCATGAGGAAGAAGTGGCAGCCTGAGAGA  636

seq1  ACTGAAGGAGTCTTCAGTAGGGAAATACTTTAGGTATCATTATAATGTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGAGTCTTCAGTAGGGAAATACTTTAGGTATCATTATAATGTCT  686

seq1  TAGCTTTATATGAAGAAACTGGAAGGAGAAGGAAGAGAAGATAAAATCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTATATGAAGAAACTGGAAGGAGAAGGAAGAGAAGATAAAATCTT  736

seq1  AGCAAATAAATAAAATGTTTTGTAGACAAGAGCCAGGCCACACAGGCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATAAATAAAATGTTTTGTAGACAAGAGCCAGGCCACACAGGCACA  786

seq1  CTAGGGGACCACTTCCTCTCAAGTAGATATCGTTCCCTGAATTTCTATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGACCACTTCCTCTCAAGTAGATATCGTTCCCTGAATTTCTATTA  836

seq1  CTTTCCAATAGCTCATCAGAAGATGAACTCACGGACTAGCTCATTGATAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAATAGCTCATCAGAAGATGAACTCACGGACTAGCTCATTGATAC  886

seq1  AGTCAGACCCAGTCACTTACCCAAAGCCCAAACTCTGAACAGTGACTAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGACCCAGTCACTTACCCAAAGCCCAAACTCTGAACAGTGACTAAA  936

seq1  TTTTACATTTTAATATGAAAATATATTAGGCAAAGACACATGCATCCTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATTTTAATATGAAAATATATTAGGCAAAGACACATGCATCCTAT  986

seq1  AAAAAGATAAATTGTTTACAAGCACCTGAAATAGCAAACAACGAGTAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATAAATTGTTTACAAGCACCTGAAATAGCAAACAACGAGTAAAA  1036

seq1  ACCACATAGATGTTCAGTCATGGGAGAATTC  1079
      |||||||||||||||||||||||||||||||
seq2  ACCACATAGATGTTCAGTCATGGGAGAATTC  1067