BAC Information

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BAC

Clone NameB6Ng01-097D23
Chromosome2 (Build37)
Map Location 145,908,604 - 146,116,421
singlet/doubletdoublet
Overlap geneInsm1
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097D23.bB6Ng01-097D23.g
ACCDH907672DH907673
length1,1811,140
definitionDH907672|Mus musculus domesticus DNA, BAC clone: B6Ng01-097D23, 5' end.DH907673|Mus musculus domesticus DNA, BAC clone: B6Ng01-097D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,115,249 - 146,116,421)(145,908,604 - 145,909,745)
sequence
gaattccttcctcatattggaagaatgtaacagactgtcaggcttccccc
cacacacacaaaattaagctgggatagaactcagtggcggagaacacact
ggtgtgtgcaaggctcccagtccccagtagcacccaaaggggagacagaa
cgagaagagtatcagaagcgtggcgtggacgtgccagagcgctgcccaca
tgcttactcttcttcactccatgggctccactgtctgcctgccagcacag
tgacctatttgtcagtcactccaggctgctcataccatagttttataaaa
ttgtaagagaatgttcagaattctgtgttttggggccatttatgcaaatg
tatacataaatttaatataaggtttttgtgtactaaaaagagattattca
catttatagttagccttcctttttagtgatcaaaatattggctgtttttt
atgtgatcccttattgaacattttatttaagcattttagagatgagaatc
tccaacactgtttctgactatgtgtttcttagtcacagtctggcacaggg
gtcgtttgatgtttgaatctggcaaatggactgactccttaaaggaactt
cagcctatgaaataatatagaattattaaaaaatatataatttacaaatt
attaagaaaagtttatcttgtgggaaagaaaatagagactggtattatca
ataattatatttaatttgtgttccatttttgaaagtggttttacttttat
ctgtagatccaagttgaaaagtgtgctcagcttcatgggaattgtcatag
ggtttcagaaaaatgaaacaaaaacactgcttgttccctgagtgtgcctc
ccatcttagatcctggcacttgttttccaaaggcatcctaatatccttgc
cctttgtcattggaaatgaactggtgtatttgatgagacaaaatttcact
aagcacttaagatccccattttttactgtgtgttaggatatctagttttg
ctggaaacgcctgagtcgagagctgtagctgttaactgccgtggggcacc
ttggattcatcctgtttccagtccacctcttacaaagtggagacaaatcg
gacggagatcccccaaaagtggaaaccgcagcctgtaccttgggggctgg
acatatgatggcattaaatgcctatcctaac
gaattccaagcccagggttggctcaaggactacctagggcattggtgaag
gccaggaagcaaagttcgattttgtttaggtatttggcaagtcattgctt
agaggcacctataacaaagcaatactgaaaggaagtacacagatccattc
acaaggacaaaattggagcatacgtgctatgggatgcacagttccaggag
actaagtttccgtgaaactcttcgcctcgggactgcttccaggtttctaa
acctgttgagcaagtcactactggagtggatatagcaaacaacatcaacg
acaacaacaaaacccaaacaatccattaatggacaaagcttcaggctccc
tagtctagacgttgatccttcatctggtagaaaaaaactgaggtaaagaa
tagctcagaaccaggaagtttttgcagctctgactcttaagtgaccataa
ccctgttatgaggtgacacaattccactcagtatctggcccagctgtggg
cactggcagtagccagcctaatgccagcagcctaattacgttctttatgt
ttgtctgaggacatctgaaaccttcagtgtggcctgtcactaattaggtg
actaataatagtgcttgcttgcttgctgatctcagagccaacccccatga
gcaagttgattgtgagtgccctgtcctatcacaggaactgaaagggcgtg
tggtcccctggtttgcttttgttcacaccagaacaaaagcagggcaaagg
catgctcatatcaacttccctagagcccagagaacaggcagacacttgaa
acagaaatgtaagggcaggttgcatcttgccctattgtggtgttggaact
acaaagagatcaccagggaccgtactgaggtccgtctggtagctggggat
gggaggagctgtgacctggagagcatgctaagcacagtggctcagcctcc
caggggcccacagccccacggcagaatgactaaacactgagccgtcagaa
aagatgatcggggacatctccagggatgatacaggccttcctagccaatt
ccaatatttaatgtatagattaaataaaagtatcttccatttggctaaag
gtatcaatcctggttcctttcaagaaaaggtaatttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146115249_146116421
seq2: B6Ng01-097D23.b_48_1228 (reverse)

seq1  GTTA-GATA-GCATTTTAT-CCATCATATGT-CAGCACC--AAGTACCAG  44
      |||| |||| |||||| || ||||||||||| |||| ||  | ||||  |
seq2  GTTAGGATAGGCATTTAATGCCATCATATGTCCAGCCCCCAAGGTACAGG  50

seq1  CTGCTGTTTCCACTTTTGTGTGATTCTTCTGTCGAATTTTGTCT-CACTT  93
      |||| ||||||||||||| | |||   || |||  | ||||||| |||||
seq2  CTGCGGTTTCCACTTTTGGGGGAT--CTCCGTCCGA-TTTGTCTCCACTT  97

seq1  TGTAAGAG--TGACTGGAAACAGGATGAATCCAA-GTG-CCCACGGCAGT  139
      ||||||||   ||||||||||||||||||||||| ||| |||||||||||
seq2  TGTAAGAGGTGGACTGGAAACAGGATGAATCCAAGGTGCCCCACGGCAGT  147

seq1  TAACAGCTACAGCTCTCGACTCAGGCGTTTCCAGCAAAACTAGATATCCT  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTACAGCTCTCGACTCAGGCGTTTCCAGCAAAACTAGATATCCT  197

seq1  TACACACAGTAAAAAATGGGGATCTTAAGTGCTTAGTGAAATTTTTGTCT  239
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACACACAGTAAAAAATGGGGATCTTAAGTGCTTAGTGAAA-TTTTGTCT  246

seq1  CATCAAATACACCAGTTCATTTCCAATGACAAAGGGCAAGGATATTAGGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATACACCAGTTCATTTCCAATGACAAAGGGCAAGGATATTAGGA  296

seq1  TGCCTTTGGAAAACAAGTGCCAGGATCTAAGATGGGAGGCACACTCA-GG  338
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCCTTTGGAAAACAAGTGCCAGGATCTAAGATGGGAGGCACACTCAGGG  346

seq1  AACAAGCAGTGTTTTTGTTTCATTTTTCTGAAACCCTATGACAATTCCCA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCAGTGTTTTTGTTTCATTTTTCTGAAACCCTATGACAATTCCCA  396

seq1  TGAAGCTGAGCACACTTTTCAACTTGGATCTACAGATAAAAGTAAAACCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGAGCACACTTTTCAACTTGGATCTACAGATAAAAGTAAAACCA  446

seq1  CTTTCAAAAATGGAACACAAATTAAATATAATTATTGATAATACCAGTCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAAAATGGAACACAAATTAAATATAATTATTGATAATACCAGTCT  496

seq1  CTATTTTCTTTCCCACAAGATAAACTTTTCTTAATAATTTGTAAATTATA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTTTCCCACAAGATAAACTTTTCTTAATAATTTGTAAATTATA  546

seq1  TATTTTTTAATAATTCTATATTATTTCATAGGCTGAAGTTCCTTTAAGGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAATAATTCTATATTATTTCATAGGCTGAAGTTCCTTTAAGGA  596

seq1  GTCAGTCCATTTGCCAGATTCAAACATCAAACGACCCCTGTGCCAGACTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCATTTGCCAGATTCAAACATCAAACGACCCCTGTGCCAGACTG  646

seq1  TGACTAAGAAACACATAGTCAGAAACAGTGTTGGAGATTCTCATCTCTAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAGAAACACATAGTCAGAAACAGTGTTGGAGATTCTCATCTCTAA  696

seq1  AATGCTTAAATAAAATGTTCAATAAGGGATCACATAAAAAACAGCCAATA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTAAATAAAATGTTCAATAAGGGATCACATAAAAAACAGCCAATA  746

seq1  TTTTGATCACTAAAAAGGAAGGCTAACTATAAATGTGAATAATCTCTTTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCACTAAAAAGGAAGGCTAACTATAAATGTGAATAATCTCTTTT  796

seq1  TAGTACACAAAAACCTTATATTAAATTTATGTATACATTTGCATAAATGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACACAAAAACCTTATATTAAATTTATGTATACATTTGCATAAATGG  846

seq1  CCCCAAAACACAGAATTCTGAACATTCTCTTACAATTTTATAAAACTATG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAACACAGAATTCTGAACATTCTCTTACAATTTTATAAAACTATG  896

seq1  GTATGAGCAGCCTGGAGTGACTGACAAATAGGTCACTGTGCTGGCAGGCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGCAGCCTGGAGTGACTGACAAATAGGTCACTGTGCTGGCAGGCA  946

seq1  GACAGTGGAGCCCATGGAGTGAAGAAGAGTAAGCATGTGGGCAGCGCTCT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGAGCCCATGGAGTGAAGAAGAGTAAGCATGTGGGCAGCGCTCT  996

seq1  GGCACGTCCACGCCACGCTTCTGATACTCTTCTCGTTCTGTCTCCCCTTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGTCCACGCCACGCTTCTGATACTCTTCTCGTTCTGTCTCCCCTTT  1046

seq1  GGGTGCTACTGGGGACTGGGAGCCTTGCACACACCAGTGTGTTCTCCGCC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTACTGGGGACTGGGAGCCTTGCACACACCAGTGTGTTCTCCGCC  1096

seq1  ACTGAGTTCTATCCCAGCTTAATTTTGTGTGTGTGGGGGGAAGCCTGACA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTCTATCCCAGCTTAATTTTGTGTGTGTGGGGGGAAGCCTGACA  1146

seq1  GTCTGTTACATTCTTCCAATATGAGGAAGGAATTC  1173
      |||||||||||||||||||||||||||||||||||
seq2  GTCTGTTACATTCTTCCAATATGAGGAAGGAATTC  1181

seq1: chr2_145908604_145909745
seq2: B6Ng01-097D23.g_68_1207

seq1  GAATTCCAAGCCCAGGGTTGGCTCAAGGACTACCTAGGGCATTGGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAGGGTTGGCTCAAGGACTACCTAGGGCATTGGTGAAG  50

seq1  GCCAGGAAGCAAAGTTCGATTTTGTTTAGGTATTTGGCAAGTCATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGCAAAGTTCGATTTTGTTTAGGTATTTGGCAAGTCATTGCTT  100

seq1  AGAGGCACCTATAACAAAGCAATACTGAAAGGAAGTACACAGATCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACCTATAACAAAGCAATACTGAAAGGAAGTACACAGATCCATTC  150

seq1  ACAAGGACAAAATTGGAGCATACGTGCTATGGGATGCACAGTTCCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACAAAATTGGAGCATACGTGCTATGGGATGCACAGTTCCAGGAG  200

seq1  ACTAAGTTTCCGTGAAACTCTTCGCCTCGGGACTGCTTCCAGGTTTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTTCCGTGAAACTCTTCGCCTCGGGACTGCTTCCAGGTTTCTAA  250

seq1  ACCTGTTGAGCAAGTCACTACTGGAGTGGATATAGCAAACAACATCAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGAGCAAGTCACTACTGGAGTGGATATAGCAAACAACATCAACG  300

seq1  ACAACAACAAAACCCAAACAATCCATTAATGGACAAAGCTTCAGGCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAAAACCCAAACAATCCATTAATGGACAAAGCTTCAGGCTCCC  350

seq1  TAGTCTAGACGTTGATCCTTCATCTGGTAGAAAAAAACTGAGGTAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAGACGTTGATCCTTCATCTGGTAGAAAAAAACTGAGGTAAAGAA  400

seq1  TAGCTCAGAACCAGGAAGTTTTTGCAGCTCTGACTCTTAAGTGACCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAGAACCAGGAAGTTTTTGCAGCTCTGACTCTTAAGTGACCATAA  450

seq1  CCCTGTTATGAGGTGACACAATTCCACTCAGTATCTGGCCCAGCTGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTATGAGGTGACACAATTCCACTCAGTATCTGGCCCAGCTGTGGG  500

seq1  CACTGGCAGTAGCCAGCCTAATGCCAGCAGCCTAATTACGTTCTTTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAGTAGCCAGCCTAATGCCAGCAGCCTAATTACGTTCTTTATGT  550

seq1  TTGTCTGAGGACATCTGAAACCTTCAGTGTGGCCTGTCACTAATTAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAGGACATCTGAAACCTTCAGTGTGGCCTGTCACTAATTAGGTG  600

seq1  ACTAATAATAGTGCTTGCTTGCTTGCTGATCTCAGAGCCAACCCCCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAATAGTGCTTGCTTGCTTGCTGATCTCAGAGCCAACCCCCATGA  650

seq1  GCAAGTTGATTGTGAGTGCCCTGTCCTATCACAGGAACTGAAAGGGCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGATTGTGAGTGCCCTGTCCTATCACAGGAACTGAAAGGGCGTG  700

seq1  TGGTCCCCTGGTTTGC-TTTGTTCACACCAGAACAAAAGCAGGGCAAAGG  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGTCCCCTGGTTTGCTTTTGTTCACACCAGAACAAAAGCAGGGCAAAGG  750

seq1  CATGCTCATATCAACTTCCCTAGAGCCCAGAGAACAGGCAGACACTTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCATATCAACTTCCCTAGAGCCCAGAGAACAGGCAGACACTTGAA  800

seq1  ACAGAAATGTAAGGGCAGGTTGCATCTTGCCCTATTGTGGTGTTGGAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGTAAGGGCAGGTTGCATCTTGCCCTATTGTGGTGTTGGAACT  850

seq1  ACAAAGAGATCACCAGGGACCGTACTGAGGTCCGTCTGGTAGCTGGGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGATCACCAGGGACCGTACTGAGGTCCGTCTGGTAGCTGGGGAT  900

seq1  GGGAGGAGCTGTGACCTGGAGAGCATGCTAAGCACAGTGGCTCAGCCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGCTGTGACCTGGAGAGCATGCTAAGCACAGTGGCTCAGCCTCC  950

seq1  CAGGGGCCCCACAGCCCCACCGCAGAAGGACTAAACACTGAGCCGTCAGA  999
      |||||| ||||||||||||| |||||| ||||||||||||||||||||||
seq2  CAGGGG-CCCACAGCCCCACGGCAGAATGACTAAACACTGAGCCGTCAGA  999

seq1  AAAGAATGATCGGGGACATCTCCAGGGATGATAACCAGG-CTTCCTAAGC  1048
      |||| ||||||||||||||||||||||||||||  |||| |||||| |||
seq2  AAAG-ATGATCGGGGACATCTCCAGGGATGATA--CAGGCCTTCCT-AGC  1045

seq1  CAATTCCAATATTTAAATGTAATTAGTATTAAATAAAAGTATCTT-CATT  1097
      |||||||||||||| ||||||  ||| |||||||||||||||||| ||||
seq2  CAATTCCAATATTT-AATGTA--TAG-ATTAAATAAAAGTATCTTCCATT  1091

seq1  T-GCTAAAGTTATCATTCCT-GTTCCTTTCAAG-AAAGGT-ATTTCCTG  1142
      | ||||||| ||||| |||| |||||||||||| |||||| ||||||||
seq2  TGGCTAAAGGTATCAATCCTGGTTCCTTTCAAGAAAAGGTAATTTCCTG  1140