BAC Information

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BAC

Clone NameB6Ng01-097H05
Chromosome2 (Build37)X (Build37)
Map Location 142,776,489 - 142,777,69872,583,524 - 72,584,664
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097H05.bB6Ng01-097H05.g
ACCDH907825DH907826
length9691,122
definitionDH907825|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H05, 5' end.DH907826|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,489 - 142,777,698)(72,583,524 - 72,584,664)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttaagtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
aatcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gactataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagcttttaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggttttttgttattccagat
gaatttgcaaattgctccttctaactcgttgaagaattgagttggaattt
ttgatggggattgcattggatctgtagattgcttttggcaagatagccat
tttttacaatgttgatcctcatataactctttttattttactatttgatg
cattggtattcattctatggctcttctctggctctatctgtatctctgtt
tctctcaaaaaacatacacacacatttggagtagggtagtatatatttcc
ccagagttaataatctggc
gaattcaaatgtttaatcgattgaaatttgctaaccttcatcaaatacag
caaaaagcagtacaaattggtacaacatctgtgttctttctttggagaga
ctgcctgaaagagaagagaaagcatttattgtcaatttaaaatgcccttg
tagaaaattgccacaataaggacaaatttcttcacagaccgtttgagtat
aaaaaatgaaatactttgcctaattttaacttttttctttggtgtaaggg
cctttaaattggtatttctaaaactattgggagtaaatggttactaatgt
aagtttccaatttcttctagaaatttatttatttttttaaataaaaaacc
ctgaatttctgggaaatggaatttaaagtaaaacaaaacaaaacaaaaaa
caaacaaacaaaaaacaaatcaaaataaaacacacaaatggatatgtgga
tagatatatagataggttttaacaggagaaaataacaaaaatagtaaata
ttgtcaatgaaatgtgtatatggataattaatgtagggaacttctattgc
cattataacttttacttatgtaattgcaagtagtaaacattatatgtgaa
gaaaacaaacaactaaggtcacattttgaaaatttattaatatagtttaa
aaattgtgtttatatagtcttatattgtgtgcacatttctatgtgagagc
agatgaatttctgtgcccagctttcccccccattctccttgcagcttatt
ttacaaagtaaaagttacttattttaacatagcccacttatacattccca
ttttaaaatttgttgacagttttatacatgtatgaaatgatgttagtaat
ttttttcccacaattaccccattctcatcctatgtctgctactgaaaccg
ttgttcgcaagaagcccgcctccttgaattttcatggcttttttgagtca
gattatatacctttctcctatccacaatataaaaactttctgctatattt
tgtaaaagttttgagcattacattttacatttagactgcattggtccaca
tgcggaaagctacataggtgagctggtcatctctgcccaaggcctgtcca
cttcgaggaggccttcagggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776489_142777698
seq2: B6Ng01-097H05.b_47_797 (reverse)

seq1  AAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAATTCCAACTCAATTCTTCAACGAGTTAGAAGGAGCAATTTGCAAATT  50

seq1  CATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATA  100
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATA  100

seq1  AAAGAACCTCTGGTGGAATCACCATGCCTGACCT-AAAGCTTTACTACAG  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAAGCTTTACTACAG  150

seq1  AGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAG  200

seq1  ACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATAGT  250

seq1  CACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAG  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAG  300

seq1  CATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAT  350

seq1  TGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGG  399
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGG  400

seq1  ATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAA  449
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAACTTCACTTAAAACCAGAGACACTGAAACTTATAGAGGAGAA  450

seq1  AGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAACA  499
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACA  500

seq1  GAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTA  550

seq1  ATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAA  600

seq1  AAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATA  650

seq1  GGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGA  700

seq1  AAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGA  749
      ||||||||||||||||||||||||||||||||| ||            ||
seq2  AAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CTGA  740

seq1  AGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCA  799
      | |||||    |||                                    
seq2  ACAAAGA----ATTC-----------------------------------  751

seq1  TGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAA  849
                                                        
seq2  --------------------------------------------------  751

seq1  ATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTA  899
                                                        
seq2  --------------------------------------------------  751

seq1  TAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAA  949
                                                        
seq2  --------------------------------------------------  751

seq1  TTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAA  999
                                                        
seq2  --------------------------------------------------  751

seq1  ATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCT  1049
                                                        
seq2  --------------------------------------------------  751

seq1  ATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCT  1099
                                                        
seq2  --------------------------------------------------  751

seq1  AAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGT  1149
                                                        
seq2  --------------------------------------------------  751

seq1  GGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGA  1199
                                                        
seq2  --------------------------------------------------  751

seq1  ACAAAGAATTC  1210
                 
seq2  -----------  751

seq1: chrX_72583524_72584664
seq2: B6Ng01-097H05.g_68_1189

seq1  GAATTCAAATGTTTAATCGATTGAAATTTGCTAACCTTCATCAAATACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTTTAATCGATTGAAATTTGCTAACCTTCATCAAATACAG  50

seq1  CAAAAAGCAGTACAAATTGGTACAACATCTGTGTTCTTTCTTTGGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGCAGTACAAATTGGTACAACATCTGTGTTCTTTCTTTGGAGAGA  100

seq1  CTGCCTGAAAGAGAAGAGAAAGCATTTATTGTCAATTTAAAATGCCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGAAAGAGAAGAGAAAGCATTTATTGTCAATTTAAAATGCCCTTG  150

seq1  TAGAAAATTGCCACAATAAGGACAAATTTCTTCACAGACCGTTTGAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTGCCACAATAAGGACAAATTTCTTCACAGACCGTTTGAGTAT  200

seq1  AAAAAATGAAATACTTTGCCTAATTTTAACTTTTTTCTTTGGTGTAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAAATACTTTGCCTAATTTTAACTTTTTTCTTTGGTGTAAGGG  250

seq1  CCTTTAAATTGGTATTTCTAAAACTATTGGGAGTAAATGGTTACTAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAATTGGTATTTCTAAAACTATTGGGAGTAAATGGTTACTAATGT  300

seq1  AAGTTTCCAATTTCTTCTAGAAATTTATTTATTTTTTTAAATAAAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCAATTTCTTCTAGAAATTTATTTATTTTTTTAAATAAAAAACC  350

seq1  CTGAATTTCTGGGAAATGGAATTTAAAGTAAAACAAAACAAAACAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTCTGGGAAATGGAATTTAAAGTAAAACAAAACAAAACAAAAAA  400

seq1  CAAACAAACAAAAAACAAATCAAAATAAAACACACAAATGGATATGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAAACAAATCAAAATAAAACACACAAATGGATATGTGGA  450

seq1  TAGATATATAGATAGGTTTTAACAGGAGAAAATAACAAAAATAGTAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATAGATAGGTTTTAACAGGAGAAAATAACAAAAATAGTAAATA  500

seq1  TTGTCAATGAAATGTGTATATGGATAATTAATGTAGGGAACTTCTATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATGAAATGTGTATATGGATAATTAATGTAGGGAACTTCTATTGC  550

seq1  CATTATAACTTTTACTTATGTAATTGCAAGTAGTAAACATTATATGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAACTTTTACTTATGTAATTGCAAGTAGTAAACATTATATGTGAA  600

seq1  GAAAACAAACAACTAAGGTCACATTTTGAAAATTTATTAATATAGTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAACAACTAAGGTCACATTTTGAAAATTTATTAATATAGTTTAA  650

seq1  AAATTGTGTTTATATAGTCTTATATTGTGTGCACATTTCTATGTGAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGTTTATATAGTCTTATATTGTGTGCACATTTCTATGTGAGAGC  700

seq1  AGATGAATTTCTGTGCCCAGCTTTCCCCCCCATTCTCCTTGCAGCTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATTTCTGTGCCCAGCTTTCCCCCCCATTCTCCTTGCAGCTTATT  750

seq1  TTACAAAGTAAAAGTTACTTATTTTAACATAGCCCACTTATACATTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGTAAAAGTTACTTATTTTAACATAGCCCACTTATACATTCCCA  800

seq1  TTTTAAAATTTGTTGACAGTTTTATACATGTATGAAATGATGTTAGTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTTGTTGACAGTTTTATACATGTATGAAATGATGTTAGTAAT  850

seq1  TTTTTTCCCACAATTACCCCATTCTCATCCTATGTCTGCTACTGAAACCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCACAATTACCCCATTCTCATCCTATGTCTGCTACTGAAACCG  900

seq1  TTGTTCGCAAGAAGCCCGCCTCCTTGAATTTTCATGGCTTTTTTGGAGTC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGTTCGCAAGAAGCCCGCCTCCTTGAATTTTCATGGCTTTTTT-GAGTC  949

seq1  AGATTTATATACCTTTCTCCTATCCACAATAATAAAAACTTTCTGCTATA  1000
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGA-TTATATACCTTTCTCCTATCCACAAT-ATAAAAACTTTCTGCTATA  997

seq1  TTTTGTAAAAGTTTTAAAGCATTACATTTTACATTTTAAGACTGTCATTT  1050
      |||||||||||||||  |||||||||||||||||||  |||||| |||| 
seq2  TTTTGTAAAAGTTTT-GAGCATTACATTTTACATTT--AGACTG-CATT-  1042

seq1  GGGTCCACATGCGGAAAAGCTACCATAGGTGAGCTGTGTCCATCTTCTGG  1100
       ||||||||||||| ||||||| ||||||||||||| || |||| ||| |
seq2  -GGTCCACATGCGG-AAAGCTA-CATAGGTGAGCTG-GT-CATC-TCT-G  1085

seq1  CCCATGGCCCTGTCAACCTTCCTGAGGAGGCCTTCAGGGCC  1141
      |||| || |||||| | ||||  ||||||||||||||||||
seq2  CCCAAGG-CCTGTCCA-CTTC--GAGGAGGCCTTCAGGGCC  1122