BAC Information

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BAC

Clone NameB6Ng01-097H24
Chromosome2 (Build37)
Map Location 91,404,712 - 91,557,635
singlet/doubletdoublet
Overlap geneCkap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik
Upstream genePtprj, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941
Downstream geneD030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097H24.bB6Ng01-097H24.g
ACCDH907863DH907864
length1,1301,014
definitionDH907863|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H24, 5' end.DH907864|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,556,520 - 91,557,635)(91,404,712 - 91,405,720)
sequence
gaattcaatccctgggactcacacaaaggtggaaacagagaatcaattcc
aagttcaagatggcagatgcagaagtaattactttcccaaagaagcataa
gaagaaaaaagactggaagtcattacaagaagaagatgtagccaaaatac
aacatgctgaagaatttcttatcaaaccagaatccaaagtggctcaatta
gacacttcttggtggccctgtgactaaagggcaggtttcattaatcttga
caagccctctaactctcttcccatgaggtggaaggctggatccgacaaag
tagtcaggtagagaagactggccacagtggacactggatcccaaagtaac
ttgttgtttaattgtgtgcattgtcaccaagacactcgtttggtgaaatc
acaacagagtgcagcaggtgaagagtatgttggaattgtccagctgcaca
atgctattgaagggggtactcagctttttagagccctagaaactctgaca
ggtgccctgtttcagcaacccccatttattgctgcagtaaagaggcagct
tggagtaaggactatctgagagcaaaatgatagaatatgatcctgaaaga
agattaggaatcttttgggtgagctgtgagctggcacgtacattcggaca
ctatgagtacaccttggcttgttactgggagttggtggtgagaggcagga
actttggaggctgtgttctgcagtcatgagtgagaaggtgaatgcaatct
gctatggggccaagattatgcttcctggtgttcttcactatgaggatggc
attgaggtcaactaggagattgtggttcattaccagtaaggaagaagcta
tctgcatggcgactgcgttgatgatcacagcagtgatttctacctgggac
catggtatagtagccaaaataaagagggtggtcatggaaagagacactta
tcctcgaaagtggggtttaggtccaaagaaggagtcagaagaagatgatg
attcaagcaggaccttctggacaagcatggcaaacccccagacactgtcc
ctgccattgaactaatcgtgaatctctgcaaagaacagcacctggcttgc
tgaaggcagtatcaagcttctcccatcagc
gaattcagttgccctcagtgatgagccaccatgttctagtggacagtttc
atgaccctggttaaattcagtatgtcacagaacagtacagaaaggcatga
atgttgaaaagggtgcatgtatggaagagggtgagtaatacggatgagag
aaagttaagagtagataagtatgccagtaattacaatatactgtatgtgt
gtgagtgtgtgtatttatatatgaatccatcaaaaagtaaaagataataa
aatttcagagtagtacttaacatgattttgtgaatttttgtttatttatt
gctagtttctttttttgttgttattgtgggttttttgtttgttaaacaat
ttcaagactgggtttctcaagtagctctgcctgttctagaattcgctctg
tataccaggctagcctcgaactcagagatctgtatacccctgcctccctc
ccaagtgctagaagtaaaggcatgtaccaccaagcttggttcatgcttgc
ctgtttctgtagggaaaaaaaaatttctgtcccaaacatgtgcatgtatt
tgaaattagttctggagggtgctccctgggcattttttgttactaatttt
gtcctttctgtattactaaaaaaacaaaaacaaaacaaaacaaaaaccac
tgataatttgacatcagttctttcagtttattctctaatgacatttcaga
acaaatttgttgacattttaatcttagttacagtgatacaatagtaaaaa
tatcttccaatttataacctaaccaacactggaataaactaatctataga
gaaatgtaatacagaaatgtctttctttagtgtaaatatctttcatcaaa
atcatggctgtttaaggtactttttgaaattttactttatgaaaaaataa
aacacatatatgcactgccaagaaaattacagatataattacaaaaaaac
cacaatattttctgattttttttttttgggatgttgtcggcttaatgact
ttcaagtaaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_91556520_91557635
seq2: B6Ng01-097H24.b_46_1175 (reverse)

seq1  GCTGATGG--GGAGCTTG-TACTGCC-TCAGC-AGCCA-GTGCTGT--CT  42
      ||||||||  | |||||| ||||||| ||||| ||||| |||||||   |
seq2  GCTGATGGGAGAAGCTTGATACTGCCTTCAGCAAGCCAGGTGCTGTTCTT  50

seq1  TGC-CAGAATCACGA-TAG-TCAATGGCAGGGACAGTGTCTGTGGGTTTG  89
      |||  ||| |||||| ||| |||||||||||||||||||||| |||||||
seq2  TGCAGAGATTCACGATTAGTTCAATGGCAGGGACAGTGTCTGGGGGTTTG  100

seq1  CCATGCTTGTCCAGAGGTCCCTGCTTG-ATCATCATCTTCTTCTGACTCC  138
      ||||||||||||||| |  |||||||| ||||||||||||||||||||||
seq2  CCATGCTTGTCCAGAAGGTCCTGCTTGAATCATCATCTTCTTCTGACTCC  150

seq1  -TCTTTGGACCTAAACCCCACTTTCGAGGATAAGTGTCTCTTTCCATGAC  187
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGACCTAAACCCCACTTTCGAGGATAAGTGTCTCTTTCCATGAC  200

seq1  CACCCTCTTTATTTTGGCTACTATACCATGGTCCCAGGTAGAAATCACTG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTTTATTTTGGCTACTATACCATGGTCCCAGGTAGAAATCACTG  250

seq1  CTGTGGTCATCAACGCAGTCGCCATGCAGATAGCTTCTTCCTTACTGGTA  287
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCATCAACGCAGTCGCCATGCAGATAGCTTCTTCCTTACTGGTA  300

seq1  ATG-ACCACAATCTCCTAGTTGACCTCAATGCCATCCTCATAGTGAAGAA  336
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCACAATCTCCTAGTTGACCTCAATGCCATCCTCATAGTGAAGAA  350

seq1  CACCAGGAAGCATAATCTTGGCCCCATAGCAGATTGCATTCACCTTCTCA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGAAGCATAATCTTGGCCCCATAGCAGATTGCATTCACCTTCTCA  400

seq1  CTCATGACTGCAGAACACAGCCTCCAAAGTTCCTGCCTCTCACCACCAAC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACTGCAGAACACAGCCTCCAAAGTTCCTGCCTCTCACCACCAAC  450

seq1  TCCCAGTAACAAGCCAAGGTGTACTCATAGTGTCCGAATGTACGTGCCAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTAACAAGCCAAGGTGTACTCATAGTGTCCGAATGTACGTGCCAG  500

seq1  CTCACAGCTCACCCAAAAGATTCCTAATCTTCTTTCAGGATCATATTCTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCTCACCCAAAAGATTCCTAATCTTCTTTCAGGATCATATTCTA  550

seq1  TCATTTTGCTCTCAGATAGTCCTTACTCCAAGCTGCCTCTTTACTGCAGC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGCTCTCAGATAGTCCTTACTCCAAGCTGCCTCTTTACTGCAGC  600

seq1  AATAAATGGGGGTTGCTGAAACAGGGCACCTGTCAGAGTTTCTAGGGCTC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGGGGGTTGCTGAAACAGGGCACCTGTCAGAGTTTCTAGGGCTC  650

seq1  TAAAAAGCTGAGTACCCCCTTCAATAGCATTGTGCAGCTGGACAATTCCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCTGAGTACCCCCTTCAATAGCATTGTGCAGCTGGACAATTCCA  700

seq1  ACATACTCTTCACCTGCTGCACTCTGTTGTGATTTCACCAAACGAGTGTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCTTCACCTGCTGCACTCTGTTGTGATTTCACCAAACGAGTGTC  750

seq1  TTGGTGACAATGCACACAATTAAACAACAAGTTACTTTGGGATCCAGTGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGACAATGCACACAATTAAACAACAAGTTACTTTGGGATCCAGTGT  800

seq1  CCACTGTGGCCAGTCTTCTCTACCTGACTACTTTGTCGGATCCAGCCTTC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGGCCAGTCTTCTCTACCTGACTACTTTGTCGGATCCAGCCTTC  850

seq1  CACCTCATGGGAAGAGAGTTAGAGGGCTTGTCAAGATTAATGAAACCTGC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATGGGAAGAGAGTTAGAGGGCTTGTCAAGATTAATGAAACCTGC  900

seq1  CCTTTAGTCACAGGGCCACCAAGAAGTGTCTAATTGAGCCACTTTGGATT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTCACAGGGCCACCAAGAAGTGTCTAATTGAGCCACTTTGGATT  950

seq1  CTGGTTTGATAAGAAATTCTTCAGCATGTTGTATTTTGGCTACATCTTCT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGATAAGAAATTCTTCAGCATGTTGTATTTTGGCTACATCTTCT  1000

seq1  TCTTGTAATGACTTCCAGTCTTTTTTCTTCTTATGCTTCTTTGGGAAAGT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAATGACTTCCAGTCTTTTTTCTTCTTATGCTTCTTTGGGAAAGT  1050

seq1  AATTACTTCTGCATCTGCCATCTTGAACTTGGAATTGATTCTCTGTTTCC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTCTGCATCTGCCATCTTGAACTTGGAATTGATTCTCTGTTTCC  1100

seq1  ACCTTTGTGTGAGTCCCAGGGATTGAATTC  1116
      ||||||||||||||||||||||||||||||
seq2  ACCTTTGTGTGAGTCCCAGGGATTGAATTC  1130

seq1: chr2_91404712_91405720
seq2: B6Ng01-097H24.g_67_1080

seq1  GAATTCAGTTGCCCTCAGTGATGAGCCACCATGTTCTAGTGGACAGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGCCCTCAGTGATGAGCCACCATGTTCTAGTGGACAGTTTC  50

seq1  ATGACCCTGGTTAAATTCAGTATGTCACAGAACAGTACAGAAAGGCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTGGTTAAATTCAGTATGTCACAGAACAGTACAGAAAGGCATGA  100

seq1  ATGTTGAAAAGGGTGCATGTATGGAAGAGGGTGAGTAATACGGATGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAAAGGGTGCATGTATGGAAGAGGGTGAGTAATACGGATGAGAG  150

seq1  AAAGTTAAGAGTAGATAAGTATGCCAGTAATTACAATATACTGTATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAAGAGTAGATAAGTATGCCAGTAATTACAATATACTGTATGTGT  200

seq1  GTGAGTGTGTGTATTTATATATGAATCCATCAAAAAGTAAAAGATAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGTGTATTTATATATGAATCCATCAAAAAGTAAAAGATAATAA  250

seq1  AATTTCAGAGTAGTACTTAACATGATTTTGTGAATTTTTGTTTATTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGAGTAGTACTTAACATGATTTTGTGAATTTTTGTTTATTTATT  300

seq1  GCTAGTTTCTTTTTTTGTTGTTATTGTGGGTTTTTTGTTTGTTAAACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTCTTTTTTTGTTGTTATTGTGGGTTTTTTGTTTGTTAAACAAT  350

seq1  TTCAAGACTGGGTTTCTCAAGTAGCTCTGCCTGTTCTAGAATTCGCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACTGGGTTTCTCAAGTAGCTCTGCCTGTTCTAGAATTCGCTCTG  400

seq1  TATACCAGGCTAGCCTCGAACTCAGAGATCTGTATACCCCTGCCTCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAGGCTAGCCTCGAACTCAGAGATCTGTATACCCCTGCCTCCCTC  450

seq1  CCAAGTGCTAGAAGTAAAGGCATGTACCACCAAGCTTGGTTCATGCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTAGAAGTAAAGGCATGTACCACCAAGCTTGGTTCATGCTTGC  500

seq1  CTGTTTCTGTAGGGAAAAAAAAATTTCTGTCCCAAACATGTGCATGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTGTAGGGAAAAAAAAATTTCTGTCCCAAACATGTGCATGTATT  550

seq1  TGAAATTAGTTCTGGAGGGTGCTCCCTGGGCATTTTTTGTTACTAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAGTTCTGGAGGGTGCTCCCTGGGCATTTTTTGTTACTAATTTT  600

seq1  GTCCTTTCTGTATTACTAAAAAAACAAAAACAAAACAAAACAAAAACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCTGTATTACTAAAAAAACAAAAACAAAACAAAACAAAAACCAC  650

seq1  TGATAA-TTGACATCAGTTC-TTCAGTTTATTCTCTAATGACATTTCAGA  698
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  TGATAATTTGACATCAGTTCTTTCAGTTTATTCTCTAATGACATTTCAGA  700

seq1  ACAAATTTGTTGACATTTTAATCTTAGTTACAGTGATACAATAGTAAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTGTTGACATTTTAATCTTAGTTACAGTGATACAATAGTAAAAA  750

seq1  TATCTTTCCAATTATAACCTAACCAACACT-GAAT-AACTAATCTATAGA  796
      |||||| | | ||||||||||||||||||| |||| ||||||||||||||
seq2  TATCTTCCAATTTATAACCTAACCAACACTGGAATAAACTAATCTATAGA  800

seq1  G-AATGTAATACAGAAATGTCTTTCTTTAGTGTAAATATCTTTCATCAAA  845
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAATACAGAAATGTCTTTCTTTAGTGTAAATATCTTTCATCAAA  850

seq1  ATCATGGCTGTTT-AGGTAC-TTTTGTAATTTTACTTTATGAAAAAATAA  893
      ||||||||||||| |||||| ||||| |||||||||||||||||||||||
seq2  ATCATGGCTGTTTAAGGTACTTTTTGAAATTTTACTTTATGAAAAAATAA  900

seq1  AACACATATATGCACTGCCAAGAAAATTACAGATAAGAATTACAAAAAAA  943
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  AACACATATATGCACTGCCAAGAAAATTACAGAT-ATAATTACAAAAAAA  949

seq1  ACCAACAATATTTTCTGA-TTTTTTTTTTTGGTATGGTTGT-GGCTTAAT  991
        | |||||||||||||| ||||||||||||| || ||||| ||||||||
seq2  --CCACAATATTTTCTGATTTTTTTTTTTTGGGAT-GTTGTCGGCTTAAT  996

seq1  GACTTCTAAGTAATAATG  1009
      |||||  |||||| ||||
seq2  GACTTTCAAGTAAAAATG  1014