BAC Information

Click to search

BAC

Clone NameB6Ng01-098M04
Chromosome2 (Build37)
Map Location 35,678,750 - 35,789,433
singlet/doubletdoublet
Overlap geneTtll11
Upstream geneFbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
Downstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098M04.bB6Ng01-098M04.g
ACCDH908756DH908757
length1,120832
definitionDH908756|Mus musculus domesticus DNA, BAC clone: B6Ng01-098M04, 5' end.DH908757|Mus musculus domesticus DNA, BAC clone: B6Ng01-098M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,678,750 - 35,679,883)(35,788,603 - 35,789,433)
sequence
gaattccatcaaatgtgtacttggttatattcttagaaacataagatcta
gtgtgtggttcaacaaaatattacacttactgatttgttttgctctgtgt
aaaaacagtctccgaaaggaaactgaaattatgaataaacagttaatatg
taaagcatatctatttctcagcccactgccaaaaagtaagtagttaccag
tcttggtctgaaacctccccttctgaatgaatgtgtcttctgatttgttc
ttgggaaggcattttcctgccttgctgtagtgagcacctttccctggact
cggctaatatggttcaggaatgaaccccgtgtccccaaaggtccatgtgg
taagggtctggtggccaggctggtgctgttgggagtgggagaaaccttaa
ggggtggaccttagcctttcagtcagctgacagtccccagaactctggaa
ccctggcctacttctctttccctttagcttctgagccgagagctaagtgg
tcttgctcgccatatacctcctaccaggatacgcttccttatcaggtcaa
gtcaatcatagactaacgtttctgaggctaggagccaaaataagtcttgt
agtaattccccgggaacctgatatggtaatagagatgctaatcccattgt
ctttctttctaaaagtcattctaagtgacaagagtgtacatttgtgccgt
tgtgtgcctcagtagagatggtatttggataaaagtctacctgactctgg
gtcttagatgctttcttggggcttctggagccacagtgctcccagcagaa
gctcagagacacgatcaaatacaaggcagtaataatgggagacggtacat
agagtttcctggacatgaaaccatgctgcatgccatcttagccgtttagc
ccttagccctacgaggttaagtggtcatcatcttatgttatagataagga
aaccaaggctaagatattcacttgctaacatcctatagaagcagagagta
gaacccagacccagtctcgctcttccataccacggcttcccttggaggta
gatgattgcagccctttggtgaaatgccagatgcatgatgactttagcag
tccagctatggactatagag
gaattcagatatgtctcatcctggctagtgagaacatactattcctggta
ctgtgcaggtaccgggcgggcatcgccacttccaatcctattggatggtg
ctttctttgatcttagtttcttcacatgggcacactgatctgttcttggc
tgaacatcaagggagttctcggtagaggagattctgatcagactttagag
tgttgtgttaaccatcagtaaagtattagtcaaagcctgtattagctacg
tttctgttgtgataaaacaaaacaaaacaaacaaacaaacaaaaaaacct
atgatcaaaaagcaccttggaagagtttattttggtttgtcgctctgtgg
ggacagaatccattgcgtgggggaaggcatgacaatggtcttgggaagca
tggcggcaggcgtagggagcgatgtcccttccccaaacggcaccatcaac
tggggaccaagtgcccagatacatgagcctctgaggacagtctcattcag
aacagcacagagtctaagtcgcacatacaaaagcacagattcatgaaaca
gtgtggcaggcacacaggaagcacaagcaggggagccacgcccatgaaat
gatgagccgtcacgtgtaggtggagcttagagggagagccttagacagta
ggacgaaccttgcgtactctccattcaagaccatggacaagtggagggca
tgtggaagcttccagtaaaagacggggtgaggatggttagggtttagaac
gggaagggtcacctgcagagtagatggatgagcgaggagaagtgaaatga
gggagaggaggatggtgctgatggtggagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35678750_35679883
seq2: B6Ng01-098M04.b_45_1164

seq1  GAATTCCATCAAATGTGTACTTGGTTATATTCTTAGAAACATAAGATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAAATGTGTACTTGGTTATATTCTTAGAAACATAAGATCTA  50

seq1  GTGTGTGGTTCAACAAAATATTACACTTACTGATTTGTTTTGCTCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTTCAACAAAATATTACACTTACTGATTTGTTTTGCTCTGTGT  100

seq1  AAAAACAGTCTCCGAAAGGAAACTGAAATTATGAATAAACAGTTAATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGTCTCCGAAAGGAAACTGAAATTATGAATAAACAGTTAATATG  150

seq1  TAAAGCATATCTATTTCTCAGCCCACTGCCAAAAAGTAAGTAGTTACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATATCTATTTCTCAGCCCACTGCCAAAAAGTAAGTAGTTACCAG  200

seq1  TCTTGGTCTGAAACCTCCCCTTCTGAATGAATGTGTCTTCTGATTTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCTGAAACCTCCCCTTCTGAATGAATGTGTCTTCTGATTTGTTC  250

seq1  TTGGGAAGGCATTTTCCTGCCTTGCTGTAGTGAGCACCTTTCCCTGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGGCATTTTCCTGCCTTGCTGTAGTGAGCACCTTTCCCTGGACT  300

seq1  CGGCTAATATGGTTCAGGAATGAACCCCGTGTCCCCAAAGGTCCATGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTAATATGGTTCAGGAATGAACCCCGTGTCCCCAAAGGTCCATGTGG  350

seq1  TAAGGGTCTGGTGGCCAGGCTGGTGCTGTTGGGAGTGGGAGAAACCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTCTGGTGGCCAGGCTGGTGCTGTTGGGAGTGGGAGAAACCTTAA  400

seq1  GGGGTGGACCTTAGCCTTTCAGTCAGCTGACAGTCCCCAGAACTCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGACCTTAGCCTTTCAGTCAGCTGACAGTCCCCAGAACTCTGGAA  450

seq1  CCCTGGCCTACTTCTCTTTCCCTTTAGCTTCTGAGCCGAGAGCTAAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCCTACTTCTCTTTCCCTTTAGCTTCTGAGCCGAGAGCTAAGTGG  500

seq1  TCTTGCTCGCCATATACCTCCTACCAGGATACGCTTCCTTATCAGGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCGCCATATACCTCCTACCAGGATACGCTTCCTTATCAGGTCAA  550

seq1  GTCAATCATAGACTAACGTTTCTGAGGCTAGGAGCCAAAATAAGTCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCATAGACTAACGTTTCTGAGGCTAGGAGCCAAAATAAGTCTTGT  600

seq1  AGTAATTCCCCGGGAACCTGATATGGTAATAGAGATGCTAATCCCATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCCCCGGGAACCTGATATGGTAATAGAGATGCTAATCCCATTGT  650

seq1  CTTTCTTTCTAAAAGTCATTCTAAGTGACAAGAGTGTACATTTGTGCCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTAAAAGTCATTCTAAGTGACAAGAGTGTACATTTGTGCCGT  700

seq1  TGTGTGCCTCAGTAGAGATGGTATTTGGATAAAAGTCTACCTGACTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCTCAGTAGAGATGGTATTTGGATAAAAGTCTACCTGACTCTGG  750

seq1  GTCTTAGATGCTTTCTTGGGGCTTCTGGAGCCACAGTGCTCCCAGCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGATGCTTTCTTGGGGCTTCTGGAGCCACAGTGCTCCCAGCAGAA  800

seq1  GCTCAGAGACACGATCAAATACAAGGCAGTAATAATGGGAGACGGTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGACACGATCAAATACAAGGCAGTAATAATGGGAGACGGTACAT  850

seq1  AGAGTTTCCTGGACATGAAACCATGCTGCATGCCATCTTAGCCGTTTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCCTGGACATGAAACCATGCTGCATGCCATCTTAGCCGTTTAGC  900

seq1  CCTTAGCCCTACGAGGTTAAGTGGTCATCATCTTATGTTATAGATAAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCCCTACGAGGTTAAGTGGTCATCATCTTATGTTATAGATAAGGA  950

seq1  AACCAAGGGCTAAGGATATTCACTTGCCAACATCCTATAAGAAGCAGAGA  1000
      |||||| |||||| ||||||||||||| |||||||||| |||||||||||
seq2  AACCAA-GGCTAA-GATATTCACTTGCTAACATCCTAT-AGAAGCAGAGA  997

seq1  GTAGAACCCAGAACCCAGGTCTCGCTCCTTCCATACCACGGCTTTCCCCT  1050
      ||||||||||| ||||| |||||||| |||||||||||||||||  ||||
seq2  GTAGAACCCAG-ACCCA-GTCTCGCT-CTTCCATACCACGGCTT--CCCT  1042

seq1  GGGAGGTTAGATGACTGCAGCACTCTGTGAAAATGCCAAGATGCTTTGAT  1100
       ||||| ||||||| |||||| || ||   ||||||| ||||||  ||||
seq2  TGGAGG-TAGATGATTGCAGCCCTTTGGTGAAATGCC-AGATGC-ATGAT  1089

seq1  AGACCTTCAGCAGTCCCAGCTATGGACTATAGAG  1134
       || ||| |||||| |||||||||||||||||||
seq2  -GA-CTTTAGCAGT-CCAGCTATGGACTATAGAG  1120

seq1: chr2_35788603_35789433
seq2: B6Ng01-098M04.g_69_899 (reverse)

seq1  AGCTCCACCATCAGCACCATCCTCCTCTCCCTCATTTCACTTCTCCTCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACCATCAGCACCATCCTCCTCTCCCTCATTTCACTTCTCCTCGC  50

seq1  TCATCCATCTACTCTGCAGGTGACCCTTCCCGTTCTAAACCCTAACCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATCTACTCTGCAGGTGACCCTTCCCGTTCTAAACCCTAACCATC  100

seq1  CTCACCCCGTCTTTTACTGGAAGCTTCCACATGCCCTCCACTTGTCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCGTCTTTTACTGGAAGCTTCCACATGCCCTCCACTTGTCCATG  150

seq1  GTCTTGAATGGAGAGTACGCAAGGTTCGTCCTACTGTCTAAGGCTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAATGGAGAGTACGCAAGGTTCGTCCTACTGTCTAAGGCTCTCCC  200

seq1  TCTAAGCTCCACCTACACGTGACGGCTCATCATTTCATGGGCGTGGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCTCCACCTACACGTGACGGCTCATCATTTCATGGGCGTGGCTCC  250

seq1  CCTGCTTGTGCTTCCTGTGTGCCTGCCACACTGTTTCATGAATCTGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGTGCTTCCTGTGTGCCTGCCACACTGTTTCATGAATCTGTGCT  300

seq1  TTTGTATGTGCGACTTAGACTCTGTGCTGTTCTGAATGAGACTGTCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGTGCGACTTAGACTCTGTGCTGTTCTGAATGAGACTGTCCTCA  350

seq1  GAGGCTCATGTATCTGGGCACTTGGTCCCCAGTTGATGGTGCCGTTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCATGTATCTGGGCACTTGGTCCCCAGTTGATGGTGCCGTTTGGG  400

seq1  GAAGGGACATCGCTCCCTACGCCTGCCGCCATGCTTCCCAAGACCATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGACATCGCTCCCTACGCCTGCCGCCATGCTTCCCAAGACCATTGT  450

seq1  CATGCCTTCCCCCACGCAATGGATTCTGTCCCCACAGAGCGACAAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTCCCCCACGCAATGGATTCTGTCCCCACAGAGCGACAAACCAA  500

seq1  AATAAACTCTTCCAAGGTGCTTTTTGATCATAGGTTTTTTTGTTTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTCTTCCAAGGTGCTTTTTGATCATAGGTTTTTTTGTTTGTTTG  550

seq1  TTTGTTTTGTTTTGTTTTATCACAACAGAAACGTAGCTAATACAGGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTATCACAACAGAAACGTAGCTAATACAGGCTTT  600

seq1  GACTAATACTTTACTGATGGTTAACACAACACTCTAAAGTCTGATCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATACTTTACTGATGGTTAACACAACACTCTAAAGTCTGATCAGAA  650

seq1  TCTCCTCTACCGAGAACTCCCTTGATGTTCAGCCAAGAACAGATCAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTACCGAGAACTCCCTTGATGTTCAGCCAAGAACAGATCAGTGT  700

seq1  GCCCATGTGAAGAAACTAAGATCAAAGAAAGCACCATCCAATAGGATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGTGAAGAAACTAAGATCAAAGAAAGCACCATCCAATAGGATTGG  750

seq1  AAGTGGCGATGCCCGCCCGGTACCTGCACAGTACCAGGAATAGTATGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCGATGCCCGCCCGGTACCTGCACAGTACCAGGAATAGTATGTTC  800

seq1  TCACTAGCCAGGATGAGACATATCTGAATTC  831
      |||||||||||||||||||||||||||||||
seq2  TCACTAGCCAGGATGAGACATATCTGAATTC  831