BAC Information

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BAC

Clone NameB6Ng01-099C11
Chromosome2 (Build37)
Map Location 82,669,382 - 82,793,517
singlet/doubletdoublet
Overlap geneLOC433440
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
Downstream geneFsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099C11.bB6Ng01-099C11.g
ACCDH909027DH909028
length1,2431,158
definitionDH909027|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C11, 5' end.DH909028|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,669,382 - 82,670,657)(82,792,331 - 82,793,517)
sequence
gaattccatatttttatataaaactacaatcagtcttttcagttacagta
gacagtagtgctacaaaagcacattttcattcccccaagcaaattgttac
agaactagcatgtatgctgcatgcatgaattttctgttacaataagaaac
tatctgtgaaaatcagcttattaagagggaagatttctagatttctgcag
tgtggaggagtcagttcatgctcagctggcctcatggctttcaagtcgga
gattagacagtgcatccggactgcatatgggagagatagccactaatctc
cttgcagccagaaagtaaaaggttagagaagggactaatacctgtggtgt
ccttgaaagctatgtcatcagtaacctaagagctctcagaaagcaccatt
ccttaaagggtaacattttctgtaacaatagtaccaagctgaggacaaag
actttatacctgcaatctgaggaatatctaagatttaaggtgtagcatcg
atgtaccacaaaagaggccaggaaagagaaaatattaaatctatcaataa
ataaatgaactcaatgtatgaaaatactatgtatatctcataataaatat
cgtgttatgaggaaataaaagcaagagaaattcctgagacaagacaaaat
aaaactgccagtatttcaacgacatatgtgctaacaaaatagaaaacaaa
aaataaatttagagaatcctgcaggattctgcaaaggtatattctgtctc
ccaggtctcctctatacatgtcaaaaaaaaaaaaaaaaaacttgtctatg
atccacaaattgtcacaggaagactatggtgagtggcaagagggaaggtg
agtcgaataacctgtgaacttgatgagcagtgtggtaacatgttcttgcc
ttctgtatatcttgtcgaagatacagaatgtgacaactacagtatgctct
acagtgttacccctctatgctatagagagataggtccttacacatagagc
agacaagactcactgtcaaacaaacagagtatgattaccctaaaataaaa
caataaattatgtcatcaaaaataaagtatcagttaaaagacagcttaca
attttaacagatttttattaatcatgcagtacataatttatcaaacaact
acccagatatactaactttctattaaggattcagttaaatcagttactgg
aactgaatcactcaaaagctataaagagtataaatatatgtgt
gaattcagaggttgaggagaaacccaaacagcattacaaaccaacggaat
gaaacagtactgcactgataccacatctagacaaagacccaaaacaaaag
aaattatttcgcaacccaccaacattccttcttgataaaacttttggtag
taataatagaatttttaaacctaataaagtataagacacacacagatttc
atagtttactgtagtaaaggtattggggttttttggtttgtttttattta
agatccatagaaaacctactgtaataaactatttctatgtatatatgtgt
gtgctctatctataggtgtttaaaaggatgttggaacattgaacataagg
tgatgtgcagattacactgagtaagacaagcctaattactcacacgacca
gtgaatctcaaacaagtctaatatgtacatgtgagaagctgaatgtaaaa
ggaagtataaacttcagtttatgatatttcataggaaaatgaagcagata
cttcaatttccattattttatgaagtttaaataaaatgatatactgcaat
acaaactaaactgtaaattttacatgtacgtttatcaagagtaaattacc
ccaaatttagatttttatatctacatttattaatataagaatcatttact
gtgtcttattaattaaagaatcagcctaaaaaatagtataaaatacgtaa
aagtaaaaacaggagacaaagctaatggtttaagagcacctgcaaagagc
cttggttcagtttccagcaccaatgtggtggtatacagcgtcatgtaacc
caagtcccagggcatctgtgccactcttctgacctctgtaggctcattca
tgcatatagtgtgaatacattcatgctgcttataaacctaaactaaaaaa
taactcttttcaaatgagataaaagaatgtgcttagtttctggggtaaat
gaatattcatagaacaattattttgtgtttgtctttgtgtatttaatatt
agtaagctggtaaaaggttctatagtctgtcatttttctatctgcttaca
ttctaatcaagaacacatactttactgaaagagtgtaactttaaaacatg
aagagcaaagggttactaaaatttctagtctaaagaacatatttatagag
caggattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_82669382_82670657
seq2: B6Ng01-099C11.b_46_1288

seq1  GAATTCCATATTTTTATATAAAACTACAATCAGTCTTTTCAGTTACAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTTTTATATAAAACTACAATCAGTCTTTTCAGTTACAGTA  50

seq1  GACAGTAGTGCTACAAAAGCACATTTTCATTCCCCCAAGCAAATTGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGTGCTACAAAAGCACATTTTCATTCCCCCAAGCAAATTGTTAC  100

seq1  AGAACTAGCATGTATGCTGCATGCATGAATTTTCTGTTACAATAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAGCATGTATGCTGCATGCATGAATTTTCTGTTACAATAAGAAAC  150

seq1  TATCTGTGAAAATCAGCTTATTAAGAGGGAAGATTTCTAGATTTCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGAAAATCAGCTTATTAAGAGGGAAGATTTCTAGATTTCTGCAG  200

seq1  TGTGGAGGAGTCAGTTCATGCTCAGCTGGCCTCATGGCTTTCAAGTCGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGAGTCAGTTCATGCTCAGCTGGCCTCATGGCTTTCAAGTCGGA  250

seq1  GATTAGACAGTGCATCCGGACTGCATATGGGAGAGATAGCCACTAATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGACAGTGCATCCGGACTGCATATGGGAGAGATAGCCACTAATCTC  300

seq1  CTTGCAGCCAGAAAGTAAAAGGTTAGAGAAGGGACTAATACCTGTGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGCCAGAAAGTAAAAGGTTAGAGAAGGGACTAATACCTGTGGTGT  350

seq1  CCTTGAAAGCTATGTCATCAGTAACCTAAGAGCTCTCAGAAAGCACCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAAGCTATGTCATCAGTAACCTAAGAGCTCTCAGAAAGCACCATT  400

seq1  CCTTAAAGGGTAACATTTTCTGTAACAATAGTACCAAGCTGAGGACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGGGTAACATTTTCTGTAACAATAGTACCAAGCTGAGGACAAAG  450

seq1  ACTTTATACCTGCAATCTGAGGAATATCTAAGATTTAAGGTGTAGCATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATACCTGCAATCTGAGGAATATCTAAGATTTAAGGTGTAGCATCG  500

seq1  ATGTACCACAAAAGAGGCCAGGAAAGAGAAAATATTAAATCTATCAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCACAAAAGAGGCCAGGAAAGAGAAAATATTAAATCTATCAATAA  550

seq1  ATAAATGAACTCAATGTATGAAAATACTATGTATATCTCATAATAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAACTCAATGTATGAAAATACTATGTATATCTCATAATAAATAT  600

seq1  CGTGTTATGAGGAAATAAAAGCAAGAGAAATTCCTGAGACAAGACAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTATGAGGAAATAAAAGCAAGAGAAATTCCTGAGACAAGACAAAAT  650

seq1  AAAACTGCCAGTATTTCAACGACATATGTGCTAACAAAATAGAAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCCAGTATTTCAACGACATATGTGCTAACAAAATAGAAAACAAA  700

seq1  AAATAAATTTAGAGAATCCTGCAGGATTCTGCAAAGGTATATTCTGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTAGAGAATCCTGCAGGATTCTGCAAAGGTATATTCTGTCTC  750

seq1  CCAGGTCTCCTCTATACATGTCAAAAAAAAAAAAAAAAAACTTGTCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTCCTCTATACATGTCAAAAAAAAAAAAAAAAAACTTGTCTATG  800

seq1  ATCCACAAATTGTCACAGGAAGACTATGGTGAGTGGCAAGAGGGAAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAAATTGTCACAGGAAGACTATGGTGAGTGGCAAGAGGGAAGGTG  850

seq1  AGTCGAATAACCTGTGAACTTGATGAGCAGTGTGGTAACATGTTCTTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAATAACCTGTGAACTTGATGAGCAGTGTGGTAACATGTTCTTGCC  900

seq1  TTCTGTATATCTTGTCGAAGATACAGAATGTGACAACTACAGTATGCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATATCTTGTCGAAGATACAGAATGTGACAACTACAGTATGCTCT  950

seq1  ACAGTGTTA-CACTCTATGCTAATAGAGAAGAATAGGTCCTTACACATAG  999
      ||||||||| | ||||||||| |||||||   ||||||||||||||||||
seq2  ACAGTGTTACCCCTCTATGCT-ATAGAGA--GATAGGTCCTTACACATAG  997

seq1  AGCAGACAAGACTCACTGTCAAACAAAACAAGAGTATGATTAACCCTAAA  1049
      |||||||||||||||||||||||||||   ||||||||||| ||||||||
seq2  AGCAGACAAGACTCACTGTCAAACAAA--CAGAGTATGATT-ACCCTAAA  1044

seq1  ATAAAAACAATAAAATTATGTCATCAAAAATAAAGTATCAAGGTTAAAAA  1099
      || |||||||| ||||||||||||||||||||||||||||  ||| ||||
seq2  AT-AAAACAAT-AAATTATGTCATCAAAAATAAAGTATCA--GTT-AAAA  1089

seq1  GACAAGCTACAAATTTTTAACAGATATTTATAAATCATGCAGTACATAAA  1149
      ||||   |||||  ||||||||||| ||||| ||||||||||||||||| 
seq2  GACAGCTTACAA--TTTTAACAGATTTTTATTAATCATGCAGTACATAA-  1136

seq1  TGTAATCAAAACAACATACCCATAGATATACTAACCTTTTACTAATAAAA  1199
        | ||| ||||||| |||||  |||||||||||| || || ||      
seq2  -TTTATC-AAACAAC-TACCC--AGATATACTAACTTTCTATTA------  1175

seq1  GAAAATCAAGTAAAACCCAGGTAAACTTTGAACTAGATCACTACAAAACA  1249
       |  ||  ||| |||  ||| ||    | |||||  |||||| ||||  |
seq2  -AGGATTCAGTTAAA-TCAGTTA---CTGGAACTGAATCACT-CAAA--A  1217

seq1  GCATATAAAATGTATAAATATATGTGT  1276
      || ||||||  ||||||||||||||||
seq2  GC-TATAAAGAGTATAAATATATGTGT  1243

seq1: chr2_82792331_82793517
seq2: B6Ng01-099C11.g_69_1226 (reverse)

seq1  AAATCTTGCTCTTATAAATATGTTCTTTTAGAGAACTAGAAATTTTAGTT  50
      ||||| ||||| ||||||||||||||||   || ||||||||||||||| 
seq2  AAATCCTGCTC-TATAAATATGTTCTTT---AG-ACTAGAAATTTTAGT-  44

seq1  AAAACCCTTTTTGCTTCCTTCATGTTTTAAAAGTTTTACTCTTTTTCAGT  100
        |||||  ||||||  ||||||||||||||    |||| || |||||||
seq2  --AACCC--TTTGCT--CTTCATGTTTTAAA---GTTACACTCTTTCAGT  85

seq1  TTAATAGTATGTTGGTCCTTTGATTTAGAATGTAAAGCAGGATAAGGAAA  150
         | |||||||  || | |||| ||||||||| ||||| ||||  ||||
seq2  ---AAAGTATGT--GTTC-TTGA-TTAGAATGT-AAGCA-GATA--GAAA  124

seq1  AATGACAGACTATAGAACCCTTTTACCAGCTTACTAATTATTAAATACAC  200
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  AATGACAGACTATAGAA-CCTTTTACCAGCTTACTAA-TATTAAATACAC  172

seq1  AAAGACAAACACAAAATAATTGTTCTTATGAATATTCATTTACCCCAGAA  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAGACAAACACAAAATAATTGTTC-TATGAATATTCATTTACCCCAGAA  221

seq1  ACTAAGCACATTCTTTTATCTCATTTTGAAAAGAGTTA-TTTTTAGTTTA  299
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  ACTAAGCACATTCTTTTATCTCA-TTTGAAAAGAGTTATTTTTTAGTTTA  270

seq1  GGTTTATAAGCAGCATGAATGTATTCACACTATATGCATGAATGAGCCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATAAGCAGCATGAATGTATTCACACTATATGCATGAATGAGCCTA  320

seq1  CAGAGGTCAGAAGAGTGGCACAGATGCCCTGGGACTTGGGTTACATGACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCAGAAGAGTGGCACAGATGCCCTGGGACTTGGGTTACATGACG  370

seq1  CTGTATACCACCACATTGGTGCTGGAAACTGAACCAAGGCTCTTTGCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACCACCACATTGGTGCTGGAAACTGAACCAAGGCTCTTTGCAGG  420

seq1  TGCTCTTAAACCATTAGCTTTGTCTCCTGTTTTTACTTTTACGTATTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAAACCATTAGCTTTGTCTCCTGTTTTTACTTTTACGTATTTTA  470

seq1  TACTATTTTTTAGGCTGATTCTTTAATTAATAAGACACAGTAAATGATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTTTTAGGCTGATTCTTTAATTAATAAGACACAGTAAATGATTC  520

seq1  TTATATTAATAAATGTAGATATAAAAATCTAAATTTGGGGTAATTTACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAATAAATGTAGATATAAAAATCTAAATTTGGGGTAATTTACTC  570

seq1  TTGATAAACGTACATGTAAAATTTACAGTTTAGTTTGTATTGCAGTATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAACGTACATGTAAAATTTACAGTTTAGTTTGTATTGCAGTATAT  620

seq1  CATTTTATTTAAACTTCATAAAATAATGGAAATTGAAGTATCTGCTTCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATTTAAACTTCATAAAATAATGGAAATTGAAGTATCTGCTTCAT  670

seq1  TTTCCTATGAAATATCATAAACTGAAGTTTATACTTCCTTTTACATTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATGAAATATCATAAACTGAAGTTTATACTTCCTTTTACATTCAG  720

seq1  CTTCTCACATGTACATATTAGACTTGTTTGAGATTCACTGGTCGTGTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACATGTACATATTAGACTTGTTTGAGATTCACTGGTCGTGTGAG  770

seq1  TAATTAGGCTTGTCTTACTCAGTGTAATCTGCACATCACCTTATGTTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGGCTTGTCTTACTCAGTGTAATCTGCACATCACCTTATGTTCAA  820

seq1  TGTTCCAACATCCTTTTAAACACCTATAGATAGAGCACACACATATATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAACATCCTTTTAAACACCTATAGATAGAGCACACACATATATAC  870

seq1  ATAGAAATAGTTTATTACAGTAGGTTTTCTATGGATCTTAAATAAAAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATAGTTTATTACAGTAGGTTTTCTATGGATCTTAAATAAAAACA  920

seq1  AACCAAAAAACCCCAATACCTTTACTACAGTAAACTATGAAATCTGTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAACCCCAATACCTTTACTACAGTAAACTATGAAATCTGTGTG  970

seq1  TGTCTTATACTTTATTAGGTTTAAAAATTCTATTATTACTACCAAAAGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATACTTTATTAGGTTTAAAAATTCTATTATTACTACCAAAAGTT  1020

seq1  TTATCAAGAAGGAATGTTGGTGGGTTGCGAAATAATTTCTTTTGTTTTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGAAGGAATGTTGGTGGGTTGCGAAATAATTTCTTTTGTTTTGG  1070

seq1  GTCTTTGTCTAGATGTGGTATCAGTGCAGTACTGTTTCATTCCGTTGGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTCTAGATGTGGTATCAGTGCAGTACTGTTTCATTCCGTTGGTT  1120

seq1  TGTAATGCTGTTTGGGTTTCTCCTCAACCTCTGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGCTGTTTGGGTTTCTCCTCAACCTCTGAATTC  1158