BAC Information

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BAC

Clone NameB6Ng01-099E03
Chromosome2 (Build37)X (Build37)
Map Location 142,776,661 - 142,777,69894,340,019 - 94,341,145
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099E03.bB6Ng01-099E03.g
ACCDH909102DH909103
length1,0031,118
definitionDH909102|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E03, 5' end.DH909103|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,661 - 142,777,698)(94,340,019 - 94,341,145)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgtcggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcaatcttacagcacaagccatggctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataactttcagtgtctctggttttatatgaagttccttga
tccacttagatttgacctcagtacaaggagataggaatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcatgt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcatggaatctttagattgcttttggcaagatagccattt
ttacaatgttgattctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacttccttagtagagtcacgccaagatattttatatattt
gtgactattgagaaggtgtgtttccctaatttctttctcagcctgttatc
ttt
gaattcagtgctttaggattctctattatgaaatatgttattaaacttaa
ctattgaatttttatattttagttatatttcagtcttaatttttctttta
tttcaatttttactttgacaatttagacatatatagactgttttgataat
atttacttttattactctccttatctatatgccgatgctgccaaacccta
tcttctttaattaattaattaattatttcacttctcaaatactatccctc
ttcctagtcccctttcactaggtccattcccccattcatcctccctcctc
cccttctcctccaagaagggaactcacccctttggtgttcccccccatgc
tgtcacatcaagtatctgcaggattaagggcatcctctcccactgagacc
agacaaggcagcccagttgggaactgaatcctgtcattctatatagcttt
tgagacacctccctactcaggttgtttgggaactcacatggagactgagt
tgcacatctgctatatatgttctgggatctcctaacagcctgtgtatgat
ctttaaaccccatcttttcatcaagaaattttcctcatttcatctctctc
tatctctgtctttttgtctctttgtctctgtctccctctgtctctgtctt
tctgtctctgtctgtctctttttgtctttctgtttctgtctgtctctctc
tttctcttatgatccaccgcattgaccaagttgaatttaagattgtgtat
atgagcactggcagaaattaattcctagaatatgagcagctaaatactgt
caactaacaattgccttcctctcctctagcaactacaaactgccaatact
cccccatgggaaaaaataagacctcccaagccatttcagaatgggatgtt
gaagattgatgatgtatgagtaaccacatttgttgtgatttcatgagtca
atacttggtctttgtccctttcaaactttaaattcttctgcttctcttca
caattgtttgctgagcttaaggaagctgatttcacagtcaatttattaaa
cacattatggagtctgtgcatccacgttacctactgaagaaagaaccatt
tctatactaaattgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776661_142777698
seq2: B6Ng01-099E03.b_51_628 (reverse)

seq1  GGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGAC  50

seq1  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACATGATCTTCGACAAGGGAGC  100

seq1  TAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  150
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  150

seq1  ACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCT  200
      ||||||||||||||||||||||||||||| |||||||||||| | |||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATTCCTATCT  200

seq1  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  250
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  CCTTGTACTGAGGTCAAATCTAAGTGGATCAAGGAACTTCATATAAAACC  250

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAAGTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  300

seq1  TGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  350
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCCATGGCTTGTGCTGTA  350

seq1  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  400
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  400

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGACAATAAGACAAAAAGACCACCAACAGATTGGGAAA  450

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  500

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  550

seq1  ATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAT  600
      |||||||||| ||            ||| |||||    |||         
seq2  ATGGGGCTCAGAA----------CTGAACAAAGA----ATTC--------  578

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCC  650
                                                        
seq2  --------------------------------------------------  578

seq1  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  700
                                                        
seq2  --------------------------------------------------  578

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  750
                                                        
seq2  --------------------------------------------------  578

seq1  CTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGC  800
                                                        
seq2  --------------------------------------------------  578

seq1  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  850
                                                        
seq2  --------------------------------------------------  578

seq1  GTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACA  900
                                                        
seq2  --------------------------------------------------  578

seq1  GACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  950
                                                        
seq2  --------------------------------------------------  578

seq1  CAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACC  1000
                                                        
seq2  --------------------------------------------------  578

seq1  CCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1038
                                            
seq2  --------------------------------------  578

seq1: chrX_94340019_94341145
seq2: B6Ng01-099E03.g_67_1184

seq1  GAATTCAGTGCTTTAGGATTCTCTATTATGAAATATGTTATTAAACTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTTTAGGATTCTCTATTATGAAATATGTTATTAAACTTAA  50

seq1  CTATTGAATTTTTATATTTTAGTTATATTTCAGTCTTAATTTTTCTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAATTTTTATATTTTAGTTATATTTCAGTCTTAATTTTTCTTTTA  100

seq1  TTTCAATTTTTACTTTGACAATTTAGACATATATAGACTGTTTTGATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTTTACTTTGACAATTTAGACATATATAGACTGTTTTGATAAT  150

seq1  ATTTACTTTTATTACTCTCCTTATCTATATGCCGATGCTGCCAAACCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTTTATTACTCTCCTTATCTATATGCCGATGCTGCCAAACCCTA  200

seq1  TCTTCTTTAATTAATTAATTAATTATTTCACTTCTCAAATACTATCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTAATTAATTAATTAATTATTTCACTTCTCAAATACTATCCCTC  250

seq1  TTCCTAGTCCCCTTTCACTAGGTCCATTCCCCCATTCATCCTCCCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTCCCCTTTCACTAGGTCCATTCCCCCATTCATCCTCCCTCCTC  300

seq1  CCCTTCTCCTCCAAGAAGGGAACTCACCCCTTTGGTGTTCCCCCCCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCCTCCAAGAAGGGAACTCACCCCTTTGGTGTTCCCCCCCATGC  350

seq1  TGTCACATCAAGTATCTGCAGGATTAAGGGCATCCTCTCCCACTGAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATCAAGTATCTGCAGGATTAAGGGCATCCTCTCCCACTGAGACC  400

seq1  AGACAAGGCAGCCCAGTTGGGAACTGAATCCTGTCATTCTATATAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGCAGCCCAGTTGGGAACTGAATCCTGTCATTCTATATAGCTTT  450

seq1  TGAGACACCTCCCTACTCAGGTTGTTTGGGAACTCACATGGAGACTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACACCTCCCTACTCAGGTTGTTTGGGAACTCACATGGAGACTGAGT  500

seq1  TGCACATCTGCTATATATGTTCTGGGATCTCCTAACAGCCTGTGTATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATCTGCTATATATGTTCTGGGATCTCCTAACAGCCTGTGTATGAT  550

seq1  CTTTAAACCCCATCTTTTCATCAAGAAATTTTCCTCATTTCATCTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACCCCATCTTTTCATCAAGAAATTTTCCTCATTTCATCTCTCTC  600

seq1  TATCTCTGTCTTTTTGTCTCTTTGTCTCTGTCTCCCTCTGTCTCTGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGTCTTTTTGTCTCTTTGTCTCTGTCTCCCTCTGTCTCTGTCTT  650

seq1  TCTGTCTCTGTCTGTCTCTTTTTGTCTTTCTGTTTCTGTCTGTCTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGTCTGTCTCTTTTTGTCTTTCTGTTTCTGTCTGTCTCTCTC  700

seq1  TTTCTCTTATGATCCACCGCATTGACCAAGTTGAATTTAAGATTGTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTATGATCCACCGCATTGACCAAGTTGAATTTAAGATTGTGTAT  750

seq1  ATGAGCACTGGCAGAAATTAATTCCTAGAATATGAGCAGCTAAATACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACTGGCAGAAATTAATTCCTAGAATATGAGCAGCTAAATACTGT  800

seq1  CAACTAACAATTGCCTTCCTCTCCTCTAGCAACTACAAACTGCCAATACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACAATTGCCTTCCTCTCCTCTAGCAACTACAAACTGCCAATACT  850

seq1  CCCCCATGGGAAAAAAATAAGACCTCCCAAGCCA-TTCAGAATGGGATGT  899
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  CCCCCATGGG-AAAAAATAAGACCTCCCAAGCCATTTCAGAATGGGATGT  899

seq1  TGAAGGATTGAATGATGTATGAGTAACCACATTTGTTGTGATTTCATGAG  949
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAA-GATTG-ATGATGTATGAGTAACCACATTTGTTGTGATTTCATGAG  947

seq1  TCCAATAACTTGGTC-TTGTCCCTTTCAAACTTTTACATTCTTCCTGCTT  998
      | |||| |||||||| ||||||||||||||| |||| |||||| |||| |
seq2  T-CAAT-ACTTGGTCTTTGTCCCTTTCAAAC-TTTAAATTCTT-CTGC-T  992

seq1  TCTCTTCCACAA-TGTTTGCTGAGCTTTAGGAAGCTGAATATTCAACAGT  1047
      |||||| ||||| |||||||||||||| |||||||||   |||  |||||
seq2  TCTCTT-CACAATTGTTTGCTGAGCTTAAGGAAGCTG---ATTTCACAGT  1038

seq1  CAA-TTATTAAACACATTAT-GAGTCTGTGCATCAACAGTTACCTACTGA  1095
      ||| |||||||||||||||| ||||||||||||| || ||||||||||||
seq2  CAATTTATTAAACACATTATGGAGTCTGTGCATCCAC-GTTACCTACTGA  1087

seq1  GGAAAGAACTATTTCCTATACTAAAATGGGAA  1127
       |||||||| |||| |||||||||| ||||||
seq2  AGAAAGAACCATTT-CTATACTAAATTGGGAA  1118