BAC Information

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BAC

Clone NameB6Ng01-099K08
Chromosome2 (Build37)
Map Location 29,077,570 - 29,205,627
singlet/doubletdoublet
Overlap geneNtng2, Crsp8
Upstream geneOlfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx
Downstream geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099K08.bB6Ng01-099K08.g
ACCDH909382DH909383
length4791,096
definitionDH909382|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K08, 5' end.DH909383|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,205,143 - 29,205,627)(29,077,570 - 29,078,675)
sequence
caactctatggcccatgcagatgcaaaagaaaacttcctctcatgctctt
tgcagttctgggagaaacactgggttttggtgggtcagctccatctgcag
cagccccttaccttgttggaccatttgtatgcttgcagaagctggctgta
gagtggggttttgtcctgcacaggatccaggcttagcagcccactgttat
gaagagggtggttctcagacggcttgcctaccaggttgctcaaacgttcc
agttcactgaaagtaaaaagagaagctacataaacccgagtccacttcac
tccctcaagaccatcacacatctttttttcttttttcttttttccttttt
tttttttttctggttttcgagatagggtttctctgtgtagccctggctgt
cctagaactcactctgtagaccaggctggcctcgaactcagaaatccgcc
tgcctctgccacccgagtgctgggattaa
gaattcagagatcaacctgctttgcctcctgagtactgggactaaaggca
tgtactgtcagacccagccccatccatttcttaacctctaggcctcagtt
tcccatttatgtaatgggacaaggatcttcctggggcagggctaaatgag
gaaaccccagaaagtgtcggggggggggcactagccttggagacttgctt
tgtaggtgatagtcactattgctgagggtcagctccatcctccacagcct
cccaggattctcttcccagtttgcagtggggagtcaagggggacagaggc
actgggtgagtagaaagatgccttccctccccatcccccacactgcctgc
cccagcagagctttgcttctctctgacattgctattcttgtcctgtgact
gcatctccagttactggcgatcaatagggacaggaggtttatgaaaaaag
cagggaggcaagagagggggcggggtcaagggaggagaagaccgtggtgg
gcgtggcccagagaccacagagagagctgcccacaggctcagtgagagcc
ctgggatcaagtaggtcttctccttctcaagggttttggcttcctctagg
gcaaaagaggacagaacccagccaatacccaacactaggattgctgagta
gggagcccactccttttctgcccctggtatatgagggcccagtgtggcaa
tttctttggagcctctaagagttttctggatagaaaaatctgtttccagg
gtaagccctggtagtgggaactgggtggcctgtcacttccctttgactcc
cagaacttggtggctagcaaccctcaatgtgtcagccctgccaagggcct
gtgtggctgctgtcacaacagcaaaggggccctggggctgtcagcgctgg
actgcaaggaattcaaaggctttgggaagcaatgctggtgtctttttttt
tttgtttttttttttatgttttcgagacagggttttctctgtagtcttgg
ctgcctggaactcacattgtagacagggctggcctcgaactcagaaatcc
gcttgtcctgcctccaaatgctaggattaaaggtgggcccaccgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29205143_29205627
seq2: B6Ng01-099K08.b_49_533 (reverse)

seq1  TTAATCCCAGCACTCGGGTGGCAGAGGCAGGCGGATTTCTGAGTTCGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTCGGGTGGCAGAGGCAGGCGGATTTCTGAGTTCGAGG  50

seq1  CCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACACAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACACAGAGA  100

seq1  AACCCTATCTCGAAAACCAGAAAAAAAAAAAAAAGGAAAAAAGAAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTATCTCGAAAACCAGAAAAAAAAAAAAAAGGAAAAAAGAAAAAAG  150

seq1  AAAAAAAGATGTGTGATGGTCTTGAGGGAGTGAAGTGGACTCGGGTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATGTGTGATGGTCTTGAGGGAGTGAAGTGGACTCGGGTTTAT  200

seq1  GTAGCTTCTCTTTTTACTTTCAGTGAACTGGAACGTTTGAGCAACCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTCTCTTTTTACTTTCAGTGAACTGGAACGTTTGAGCAACCTGGT  250

seq1  AGGCAAGCCGTCTGAGAACCACCCTCTTCATAACAGTGGGCTGCTAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCCGTCTGAGAACCACCCTCTTCATAACAGTGGGCTGCTAAGCC  300

seq1  TGGATCCTGTGCAGGACAAAACCCCACTCTACAGCCAGCTTCTGCAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTGTGCAGGACAAAACCCCACTCTACAGCCAGCTTCTGCAAGCA  350

seq1  TACAAATGGTCCAACAAGGTAAGGGGCTGCTGCAGATGGAGCTGACCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGGTCCAACAAGGTAAGGGGCTGCTGCAGATGGAGCTGACCCAC  400

seq1  CAAAACCCAGTGTTTCTCCCAGAACTGCAAAGAGCATGAGAGGAAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCAGTGTTTCTCCCAGAACTGCAAAGAGCATGAGAGGAAGTTTT  450

seq1  CTTTTGCATCTGCATGGGCCATAGAGTTGGAATTC  485
      |||||||||||||||||||||||||||||||||||
seq2  CTTTTGCATCTGCATGGGCCATAGAGTTGGAATTC  485

seq1: chr2_29077570_29078675
seq2: B6Ng01-099K08.g_71_1166

seq1  GAATTCAGAGATCAACCTGCTTTGCCTCCTGAGTACTGGGACTAAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATCAACCTGCTTTGCCTCCTGAGTACTGGGACTAAAGGCA  50

seq1  TGTACTGTCAGACCCAGCCCCATCCATTTCTTAACCTCTAGGCCTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTCAGACCCAGCCCCATCCATTTCTTAACCTCTAGGCCTCAGTT  100

seq1  TCCCATTTATGTAATGGGACAAGGATCTTCCTGGGGCAGGGCTAAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTATGTAATGGGACAAGGATCTTCCTGGGGCAGGGCTAAATGAG  150

seq1  GAAACCCCAGAAAGTGTCGGGGGGGGGGCACTAGCCTTGGAGACTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCAGAAAGTGTCGGGGGGGGGGCACTAGCCTTGGAGACTTGCTT  200

seq1  TGTAGGTGATAGTCACTATTGCTGAGGGTCAGCTCCATCCTCCACAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGATAGTCACTATTGCTGAGGGTCAGCTCCATCCTCCACAGCCT  250

seq1  CCCAGGATTCTCTTCCCAGTTTGCAGTGGGGAGTCAAGGGGGACAGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATTCTCTTCCCAGTTTGCAGTGGGGAGTCAAGGGGGACAGAGGC  300

seq1  ACTGGGTGAGTAGAAAGATGCCTTCCCTCCCCATCCCCCACACTGCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGAGTAGAAAGATGCCTTCCCTCCCCATCCCCCACACTGCCTGC  350

seq1  CCCAGCAGAGCTTTGCTTCTCTCTGACATTGCTATTCTTGTCCTGTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGAGCTTTGCTTCTCTCTGACATTGCTATTCTTGTCCTGTGACT  400

seq1  GCATCTCCAGTTACTGGCGATCAATAGGGACAGGAGGTTTATGAAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCAGTTACTGGCGATCAATAGGGACAGGAGGTTTATGAAAAAAG  450

seq1  CAGGGAGGCAAGAGAGGGGGCGGGGTCAAGGGAGGAGAAGACCGTGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGCAAGAGAGGGGGCGGGGTCAAGGGAGGAGAAGACCGTGGTGG  500

seq1  GCGTGGCCCAGAGACCACAGAGAGAGCTGCCCACAGGCTCAGTGAGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCCCAGAGACCACAGAGAGAGCTGCCCACAGGCTCAGTGAGAGCC  550

seq1  CTGGGATCAAGTAGGTCTTCTCCTTCTCAAGGGTTTTGGCTTCCTCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCAAGTAGGTCTTCTCCTTCTCAAGGGTTTTGGCTTCCTCTAGG  600

seq1  GCAAAAGAGGACAGAACCCAGCCAATACCCAACACTAGGATTGCTGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAGGACAGAACCCAGCCAATACCCAACACTAGGATTGCTGAGTA  650

seq1  GGGAGCCCACTCCTTTTCTGCCCCTGGTATATGAGGGCCCAGTGTGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCCACTCCTTTTCTGCCCCTGGTATATGAGGGCCCAGTGTGGCAA  700

seq1  TTTCTTTGGAGCCTCTAAGAGTTTTCTGGATAGAAAAATCTGTTTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGAGCCTCTAAGAGTTTTCTGGATAGAAAAATCTGTTTCCAGG  750

seq1  GTAAGCCCTGGTAGTGGGAACTGGGTGGCCTGTCACTTCCCTTTGACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCCTGGTAGTGGGAACTGGGTGGCCTGTCACTTCCCTTTGACTCC  800

seq1  CAG-ACTTGGTGGCTAGCAACCCTCAATGTGTCAGCCCTGCCAAGGGCCT  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTGGTGGCTAGCAACCCTCAATGTGTCAGCCCTGCCAAGGGCCT  850

seq1  GTGTGGCTGCTGTCACAACAGCAAGGGGGCCCTGGGGCTGTCAGCGCTGG  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGTGGCTGCTGTCACAACAGCAAAGGGGCCCTGGGGCTGTCAGCGCTGG  900

seq1  ACTGCAGGGAATTCAAAGGCTTTGGGAAGCAATGCTGGTGTCTTTTTTTT  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAGGAATTCAAAGGCTTTGGGAAGCAATGCTGGTGTCTTTTTTTT  950

seq1  TTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGG-TTTCTCTGTAGT  998
      ||| ||||||||||| |      |||||||||||||| ||||||||||||
seq2  TTTGTTTTTTTTTTTAT-----GTTTTCGAGACAGGGTTTTCTCTGTAGT  995

seq1  CTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAG  1048
      |||||||| |||||||||||| ||||||||  ||||||||||||||||||
seq2  CTTGGCTG-CCTGGAACTCACATTGTAGACAGGGCTGGCCTCGAACTCAG  1044

seq1  AAATCCGCCTGTCTCTGCCTCCCAAGTGCTAGGATTAAAGGCGTGCGCCA  1098
      |||||||| |||| |||||| |||| ||||||||||||||| | ||    
seq2  AAATCCGCTTGTC-CTGCCT-CCAAATGCTAGGATTAAAGGTGGGC----  1088

seq1  CCACCGCC  1106
      ||||||||
seq2  CCACCGCC  1096