BAC Information

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BAC

Clone NameB6Ng01-100B03
Chromosome2 (Build37)
Map Location 173,684,344 - 173,875,269
singlet/doubletdoublet
Overlap geneLOC664880, LOC100043912, LOC664901
Upstream geneBmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189
Downstream geneStx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100B03.bB6Ng01-100B03.g
ACCDH909681DH909682
length2341,126
definitionDH909681|Mus musculus domesticus DNA, BAC clone: B6Ng01-100B03, 5' end.DH909682|Mus musculus domesticus DNA, BAC clone: B6Ng01-100B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,684,344 - 173,684,577)(173,874,144 - 173,875,269)
sequence
gaattccagacaaggcataataacgccttgcttcaaacaaaacaaaagga
aacgaaacactacaaactgggagaaaggaccagctagtgacatgtttgcc
aggggatggatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtataaccaaaaaggataatataaaaccatgtaaatatttgttcaagat
aggagcaggcttctcaactatgatctatgggctg
gaattccccacccccacccctgcaagggcaagcacagagcaccagctgtg
ggcagatgagactgtacaggcaaagcccctcccaccctgggagttcttgt
tgcaatgagactcctttggatttttctcagtactctctagagcaggagag
ggcagatgcttgggaggagacagcatagatcacttgctcagaggtccaga
ggtacaggaggatgaggtaagcagcaacagaggctgctgagaggctgtgg
gagcatggtcaagccaagggagtagataacaatttccagtttaaacagtg
acagaagcttggaggcaaaaacactcatgcatttacagggcagggtccta
gctagcgggaaacagaggcaagagaagaagggggctggggagtctgtttt
atttcaaattataaacaagttccgtatgttgattctcaaggaaggcagcc
ttggctccaaagaggctgacagttatttgttgatcttatggaaactatat
catcaaatatttcaccattgcttgagttcttgggagaaacaatatctcat
gagttcctccagcatacaatatcatcaggacagaaagctggaggaattta
tgaggaggcaaaacttccagagacccaggcatccttggataggatgggct
tcaccacttctgtgagttgggtgttcccagcagcaagacccagagcagcc
acaagcttgtcccactgtcaccattgataaggctgcttcttgcagaggct
cctgccattgcccttgctagtgtgatggagcccaggctcagaaccctggc
ctctgaagtagacgtatccaaagggaagtgataagcatgggcctcccaga
tgaggtgtctgtaggatatcaccaggtccacacgctcactgggtagcagc
gccctgcagctcctctcatgacaccatgccctctagaatgaaccctgcat
ctttctaagggaattccttctcagtaagaattcccaggtccccccctcaa
ctagtcctctttatacaggagcatcacacagcctcataaggttacacaag
cccacctttagttcaggccaaacatggccaccaggcacttcaagaatgtc
tcagtcactttgtgaagggtagatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173684344_173684577
seq2: B6Ng01-100B03.b_44_277

seq1  GAATTCCAGACAAGGCATAATAACGCCTTGCTTCAAACAAAACAAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAAGGCATAATAACGCCTTGCTTCAAACAAAACAAAAGGA  50

seq1  AACGAAACACTACAAACTGGGAGAAAGGACCAGCTAGTGACATGTTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAACACTACAAACTGGGAGAAAGGACCAGCTAGTGACATGTTTGCC  100

seq1  AGGGGATGGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATGGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TGTATAACCAAAAAGGATAATATAAAACCATGTAAATATAGGTTCAAGAT  200
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  TGTATAACCAAAAAGGATAATATAAAACCATGTAAATATTTGTTCAAGAT  200

seq1  AGGAGCAGGCATCTCACCTATGAACCATGGGCTG  234
      |||||||||| ||||| |||||| | ||||||||
seq2  AGGAGCAGGCTTCTCAACTATGATCTATGGGCTG  234

seq1: chr2_173874144_173875269
seq2: B6Ng01-100B03.g_69_1194 (reverse)

seq1  AGATCTA-CCTTCATCAAAGTGACCTGAGACATCCTTTGAGTGCCTGGT-  48
      ||||||| |||||| |||||||| ||||||||| |||  |||||||||| 
seq2  AGATCTACCCTTCA-CAAAGTGA-CTGAGACATTCTTGAAGTGCCTGGTG  48

seq1  GCCATGTCTCGCCTGAACTCAGGGTGTGCCTGTGTAACCTTTATGA-GCT  97
      ||||||| | ||||||||| | |||| || ||||||||| |||||| |||
seq2  GCCATGTTTGGCCTGAACTAAAGGTGGGCTTGTGTAACC-TTATGAGGCT  97

seq1  GTGTGATGCTCCTGTATAAAGAGGACTAGTTGAGGGGAGACCCTGGGAAT  147
      ||||||||||||||||||||||||||||||||||||| |  |||||||||
seq2  GTGTGATGCTCCTGTATAAAGAGGACTAGTTGAGGGGGGGACCTGGGAAT  147

seq1  TCTTACTGAGAAGG-ATTCCCTTAGAAAGATGCAGGGTGTCATTCTAGAG  196
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  TCTTACTGAGAAGGAATTCCCTTAGAAAGATGCAGGGT-TCATTCTAGAG  196

seq1  GGCATGGTGTCAATGAGAGGAGCTGCAGGGCGCTGCTACCCAGTGAGCGT  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTGTC-ATGAGAGGAGCTGCAGGGCGCTGCTACCCAGTGAGCGT  245

seq1  GTGGACCTGGTGATATCCTACAGACACCTCATCTGGGAGG-CCATGCTTA  295
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGGACCTGGTGATATCCTACAGACACCTCATCTGGGAGGCCCATGCTTA  295

seq1  TCACTTCCCTTTGGATACGTCTACTTCAGAGGCCAGGGTTCTGAGCCTGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCCCTTTGGATACGTCTACTTCAGAGGCCAGGGTTCTGAGCCTGG  345

seq1  GCTCCATCACACTAGCAAGGGCAATGGCAGGAGCCTCTGCAAGAAGCAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATCACACTAGCAAGGGCAATGGCAGGAGCCTCTGCAAGAAGCAGC  395

seq1  CTTATCAATGGTGACAGTGGGACAAGCTTGTGGCTGCTCTGGGTCTTGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAATGGTGACAGTGGGACAAGCTTGTGGCTGCTCTGGGTCTTGCT  445

seq1  GCTGGGAACACCCAACTCACAGAAGTGGTGAAGCCCATCCTATCCAAGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAACACCCAACTCACAGAAGTGGTGAAGCCCATCCTATCCAAGGA  495

seq1  TGCCTGGGTCTCTGGAAGTTTTGCCTCCTCATAAATTCCTCCAGCTTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGTCTCTGGAAGTTTTGCCTCCTCATAAATTCCTCCAGCTTTCT  545

seq1  GTCCTGATGATATTGTATGCTGGAGGAACTCATGAGATATTGTTTCTCCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGATGATATTGTATGCTGGAGGAACTCATGAGATATTGTTTCTCCC  595

seq1  AAGAACTCAAGCAATGGTGAAATATTTGATGATATAGTTTCCATAAGATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCAAGCAATGGTGAAATATTTGATGATATAGTTTCCATAAGATC  645

seq1  AACAAATAACTGTCAGCCTCTTTGGAGCCAAGGCTGCCTTCCTTGAGAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAACTGTCAGCCTCTTTGGAGCCAAGGCTGCCTTCCTTGAGAAT  695

seq1  CAACATACGGAACTTGTTTATAATTTGAAATAAAACAGACTCCCCAGCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATACGGAACTTGTTTATAATTTGAAATAAAACAGACTCCCCAGCCC  745

seq1  CCTTCTTCTCTTGCCTCTGTTTCCCGCTAGCTAGGACCCTGCCCTGTAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCTCTTGCCTCTGTTTCCCGCTAGCTAGGACCCTGCCCTGTAAA  795

seq1  TGCATGAGTGTTTTTGCCTCCAAGCTTCTGTCACTGTTTAAACTGGAAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAGTGTTTTTGCCTCCAAGCTTCTGTCACTGTTTAAACTGGAAAT  845

seq1  TGTTATCTACTCCCTTGGCTTGACCATGCTCCCACAGCCTCTCAGCAGCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTACTCCCTTGGCTTGACCATGCTCCCACAGCCTCTCAGCAGCC  895

seq1  TCTGTTGCTGCTTACCTCATCCTCCTGTACCTCTGGACCTCTGAGCAAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCTGCTTACCTCATCCTCCTGTACCTCTGGACCTCTGAGCAAGT  945

seq1  GATCTATGCTGTCTCCTCCCAAGCATCTGCCCTCTCCTGCTCTAGAGAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATGCTGTCTCCTCCCAAGCATCTGCCCTCTCCTGCTCTAGAGAGT  995

seq1  ACTGAGAAAAATCCAAAGGAGTCTCATTGCAACAAGAACTCCCAGGGTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAAAATCCAAAGGAGTCTCATTGCAACAAGAACTCCCAGGGTGG  1045

seq1  GAGGGGCTTTGCCTGTACAGTCTCATCTGCCCACAGCTGGTGCTCTGTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCTTTGCCTGTACAGTCTCATCTGCCCACAGCTGGTGCTCTGTGC  1095

seq1  TTGCCCTTGCAGGGGTGGGGGTGGGGAATTC  1126
      |||||||||||||||||||||||||||||||
seq2  TTGCCCTTGCAGGGGTGGGGGTGGGGAATTC  1126