BAC Information

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BAC

Clone NameB6Ng01-100C04
Chromosome2 (Build37)
Map Location 131,426,200 - 131,526,780
singlet/doubletdoublet
Overlap genenone
Upstream geneUbox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
Downstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100C04.bB6Ng01-100C04.g
ACCDH909724DH909725
length1,154955
definitionDH909724|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C04, 5' end.DH909725|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,525,613 - 131,526,780)(131,426,200 - 131,427,151)
sequence
gaattcttgatacaaaaaaacaaaaaaaaaacattcaatacaatgccaag
aaacaaacctttgcggacgcactcagacagggagtagagtgaggcgtaca
tcattcggatgatggggagaggggaacttctcttacctgtgagagaacta
cctggcacctgttttagccaatgggaccatggtacagagcagaataagag
cagcaaatggtgtggttatacagagaaaaagatgtaactgcactcaactg
tccttgtgcagtgaagagtagtgcattagggccctccactctgcattcca
aagattaccccagcagagctctgtggttgcctgcaccataatgagttaca
gcattatgcacccgctctttctatagagggtaagctgttggacaccaagg
tcagttcagtgcctggagcacagaagggggttctcggtttataactgctg
gacgaatataagaagtgaaccaatcagggtgtagagaactgacagagagg
tggggccgcttcttcagaaacaaactagaggcgttttgcacacttgcctg
ggtaacgtgctatgtcatctccaaatgagaattagaatttcatggccttg
gaggaaagctgatagtcaaaggaggtcgactctggtctgcctcaaaccat
tcacaggggatagctctgccaggcagctcccttcgtgaacaaggcagtgg
ctaaaagaaaggaaggacaggtccataggcattctctctctagcccctct
tccctttcccctattgtcttcttgccccctccccttccccttttctctcc
ttttccctaccctgctcctgaaaaattcttgatcaaaggaggaagattgt
ggtctattttcaatgtcactgctaacattcaccaattctgcaattttttc
ctgaccacaatgcacctctctgaatagcgctcaaaactacaggagattca
ctcttcccttccaatggcccttcacttccactaaccagtgccagtccttt
acagcatccattgacacgcttggtaaaaggaagctagagcaactagctat
tgttttcctaactgcctagcatggggtcaagccttcacaacaacgcctca
gcggaatttctttggcttctagttgcaagtgggaacgtgtatcataggta
cagt
gaattcaggtgagtttggtagacatctgtgtacctggcatgggttcagga
aattcctatgtgtctcattttattttactgaaacccattcgcttattcat
ttgatgtttcaacagacattttctaagaaaaataccatgctggagcatgc
ctgtaatttcagcacttgggagactaaggcaggaacatggagagtttgaa
gccagcctgggctactataatgagaccctgtctcaaaaacacacaaacca
cactaaaaacacacttcttgagagcctctcacttatttgacatgtttcta
gactccaaggacagaagtcaatagaagtcaaactacaaacatctctcctc
caagaacttacagtctagagggaggcatgcatgggccatgttagatgagt
ggtcacaagtgcctcctggaagaggaagcctctaagttgtttaatcaagg
agtaaaacaagaagtgcttagtgtccatggagagcaaagagtgtgtgtac
atgccagagatttaaagctatggtattttccagaaagtgtcattggtttc
aaagcctcgagacaggctcagaggcaagaggcaggatcagggggccttga
ggaggctgaggagctctagtgaggggtctgatcatgataggggcttgtag
tacacatttgcttatctatcatctgtctgtatgtcaggtgtgacaagttt
atattcttaaatattttgccctgacatcagtgtttggagggtcacatttg
gtcttagagtcctgtgactatgtagaggaagaggtgaccaggtctggagt
aggacatggcttcagagatgtagagaatcaggttatgggagtagagaaga
catggtcatatggatggtggcactgagtgatttgaataagaatgtccccc
atggggctcatatatttgaatgccttattatcaggggagtggcactactt
gagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131525613_131526780
seq2: B6Ng01-100C04.b_46_1199 (reverse)

seq1  ACTGTACCTAGGATACCAGCTCCCACTGTGCAAACTAGGAAGGCAAGAAA  50
      |||||||||| |||||  | ||||||| ||| ||||| |||| |||  ||
seq2  ACTGTACCTATGATACACGTTCCCACT-TGC-AACTA-GAAGCCAAAGAA  47

seq1  ATTCCTGCTGAGTGCAGTTGTCTGTAGAAAGGCTTGACCCCATGCAAAGC  100
      ||||| |||||| || ||||| |||   ||||||||||||||||| | ||
seq2  ATTCC-GCTGAG-GC-GTTGT-TGT--GAAGGCTTGACCCCATGCTAGGC  91

seq1  AGTTAGGAAAAACAATAGCTAGGTGCTCTAGCTTCCTTTTACCCATGCGT  150
      ||||||| |||||||||||||| |||||||||||||||||| ||| ||||
seq2  AGTTAGG-AAAACAATAGCTAGTTGCTCTAGCTTCCTTTTA-CCAAGCGT  139

seq1  GTCACTGGATGCCTGTAAAAGGGCTGGCACTGGTTAGTGTGAAGGTGAAG  200
      |||| |||||| |||| ||||| |||||||||||||||| ||| ||||||
seq2  GTCAATGGATG-CTGT-AAAGGACTGGCACTGGTTAGTG-GAA-GTGAAG  185

seq1  GG-CAATGGAAGGGAAGAGTGAATCTCCTGT-GGTTTGAGTGCTATTCAG  248
      || || ||||||||||||||||||||||||| | |||||| |||||||||
seq2  GGCCATTGGAAGGGAAGAGTGAATCTCCTGTAGTTTTGAGCGCTATTCAG  235

seq1  AGAGGTGGCTTTGTGGTCAGGGAAAAATTGCAGTATTGGTGAATGTTAGC  298
      |||||| || ||||||||||| ||||||||||| ||||||||||||||||
seq2  AGAGGT-GCATTGTGGTCAGGAAAAAATTGCAGAATTGGTGAATGTTAGC  284

seq1  AGTGACATTGAAGATAGACCACATTCTTCCTCCTTTGATCAAGAATTTTT  348
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  AGTGACATTGAAAATAGACCACAATCTTCCTCCTTTGATCAAGAATTTTT  334

seq1  CAGGAGCAGGGTAGGGAAAAGGAGAGAAAAGGGGAAGGGGAGGGGGCAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAGGGTAGGGAAAAGGAGAGAAAAGGGGAAGGGGAGGGGGCAAG  384

seq1  AAGACAATAGGGGAAAGGGAAGAGGGGCTAGAGAGAGAATGCCTATGGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATAGGGGAAAGGGAAGAGGGGCTAGAGAGAGAATGCCTATGGAC  434

seq1  CTGTCCTTCCTTTCTTTTAGCCACTGCCTTGTTCACGAAGGGAGCTGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTCCTTTCTTTTAGCCACTGCCTTGTTCACGAAGGGAGCTGCCT  484

seq1  GGCAGAGCTATCCCCTGTGAATGGTTTGAGGCAGACCAGAGTCGACCTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTATCCCCTGTGAATGGTTTGAGGCAGACCAGAGTCGACCTCC  534

seq1  TTTGACTATCAGCTTTCCTCCAAGGCCATGAAATTCTAATTCTCATTTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTATCAGCTTTCCTCCAAGGCCATGAAATTCTAATTCTCATTTGG  584

seq1  AGATGACATAGCACGTTACCCAGGCAAGTGTGCAAAACGCCTCTAGTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACATAGCACGTTACCCAGGCAAGTGTGCAAAACGCCTCTAGTTTG  634

seq1  TTTCTGAAGAAGCGGCCCCACCTCTCTGTCAGTTCTCTACACCCTGATTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAGAAGCGGCCCCACCTCTCTGTCAGTTCTCTACACCCTGATTG  684

seq1  GTTCACTTCTTATATTCGTCCAGCAGTTATAAACCGAGAACCCCCTTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTTCTTATATTCGTCCAGCAGTTATAAACCGAGAACCCCCTTCTG  734

seq1  TGCTCCAGGCACTGAACTGACCTTGGTGTCCAACAGCTTACCCTCTATAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGCACTGAACTGACCTTGGTGTCCAACAGCTTACCCTCTATAG  784

seq1  AAAGAGCGGGTGCATAATGCTGTAACTCATTATGGTGCAGGCAACCACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCGGGTGCATAATGCTGTAACTCATTATGGTGCAGGCAACCACAG  834

seq1  AGCTCTGCTGGGGTAATCTTTGGAATGCAGAGTGGAGGGCCCTAATGCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCTGGGGTAATCTTTGGAATGCAGAGTGGAGGGCCCTAATGCAC  884

seq1  TACTCTTCACTGCACAAGGACAGTTGAGTGCAGTTACATCTTTTTCTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCACTGCACAAGGACAGTTGAGTGCAGTTACATCTTTTTCTCTG  934

seq1  TATAACCACACCATTTGCTGCTCTTATTCTGCTCTGTACCATGGTCCCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCACACCATTTGCTGCTCTTATTCTGCTCTGTACCATGGTCCCAT  984

seq1  TGGCTAAAACAGGTGCCAGGTAGTTCTCTCACAGGTAAGAGAAGTTCCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAAACAGGTGCCAGGTAGTTCTCTCACAGGTAAGAGAAGTTCCCC  1034

seq1  TCTCCCCATCATCCGAATGATGTACGCCTCACTCTACTCCCTGTCTGAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCATCATCCGAATGATGTACGCCTCACTCTACTCCCTGTCTGAGT  1084

seq1  GCGTCCGCAAAGGTTTGTTTCTTGGCATTGTATTGAATGTTTTTTTTTTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCGCAAAGGTTTGTTTCTTGGCATTGTATTGAATGTTTTTTTTTTG  1134

seq1  TTTTTTTGTATCAAGAATTC  1168
      ||||||||||||||||||||
seq2  TTTTTTTGTATCAAGAATTC  1154

seq1: chr2_131426200_131427151
seq2: B6Ng01-100C04.g_71_1025

seq1  GAATTCAGGTGAGTTTGGTAGACATCTGTGTACCTGGCATGGGTTCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGAGTTTGGTAGACATCTGTGTACCTGGCATGGGTTCAGGA  50

seq1  AATTCCTATGTGTCTCATTTTATTTTACTGAAACCCATTCGCTTATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTATGTGTCTCATTTTATTTTACTGAAACCCATTCGCTTATTCAT  100

seq1  TTGATGTTTCAACAGACATTTTCTAAGAAAAATACCATGCTGGAGCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTTCAACAGACATTTTCTAAGAAAAATACCATGCTGGAGCATGC  150

seq1  CTGTAATTTCAGCACTTGGGAGACTAAGGCAGGAACATGGAGAGTTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTTCAGCACTTGGGAGACTAAGGCAGGAACATGGAGAGTTTGAA  200

seq1  GCCAGCCTGGGCTACTATAATGAGACCCTGTCTCAAAAACACACAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGGCTACTATAATGAGACCCTGTCTCAAAAACACACAAACCA  250

seq1  CACTAAAAACACACTTCTTGAGAGCCTCTCACTTATTTGACATGTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAACACACTTCTTGAGAGCCTCTCACTTATTTGACATGTTTCTA  300

seq1  GACTCCAAGGACAGAAGTCAATAGAAGTCAAACTACAAACATCTCTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAAGGACAGAAGTCAATAGAAGTCAAACTACAAACATCTCTCCTC  350

seq1  CAAGAACTTACAGTCTAGAGGGAGGCATGCATGGGCCATGTTAGATGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTTACAGTCTAGAGGGAGGCATGCATGGGCCATGTTAGATGAGT  400

seq1  GGTCACAAGTGCCTCCTGGAAGAGGAAGCCTCTAAGTTGTTTAATCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAAGTGCCTCCTGGAAGAGGAAGCCTCTAAGTTGTTTAATCAAGG  450

seq1  AGTAAAACAAGAAGTGCTTAGTGTCCATGGAGAGCAAAGAGTGTGTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACAAGAAGTGCTTAGTGTCCATGGAGAGCAAAGAGTGTGTGTAC  500

seq1  ATGCCAGAGATTTAAAGCTATGGTATTTTCCAGAAAGTGTCATTGGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGAGATTTAAAGCTATGGTATTTTCCAGAAAGTGTCATTGGTTTC  550

seq1  AAAGCCTCGAGACAGGCTCAGAGGCAAGAGGCAGGATCAGGGGGCCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCGAGACAGGCTCAGAGGCAAGAGGCAGGATCAGGGGGCCTTGA  600

seq1  GGAGGCTGAGGAGCTCTAGTGAGGGGTCTGATCATGATAGGGGCTTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGAGGAGCTCTAGTGAGGGGTCTGATCATGATAGGGGCTTGTAG  650

seq1  TACACATTTGCTTATCTATCATCTGTCTGTATGTCAGGTGTGACAAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTTGCTTATCTATCATCTGTCTGTATGTCAGGTGTGACAAGTTT  700

seq1  ATATTCTTAAATATTTTGCCCTGACATCAGTGTTTGGAGGGTCACA-TTG  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATATTCTTAAATATTTTGCCCTGACATCAGTGTTTGGAGGGTCACATTTG  750

seq1  GTCTTAGAGTCCTGTGACTATGTAGAGGAAGAGGTGACCAGGTCTGGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGAGTCCTGTGACTATGTAGAGGAAGAGGTGACCAGGTCTGGAGT  800

seq1  AGGACATGGCTTCAGAGATGTAGAGAATCAGGTTAT-GGAGTAGAGAAGA  848
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGACATGGCTTCAGAGATGTAGAGAATCAGGTTATGGGAGTAGAGAAGA  850

seq1  CATGGTCATATGGATGGTGGCACTGAGGTGATTTGAATAAGAATGTCCCC  898
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATGGTCATATGGATGGTGGCACTGA-GTGATTTGAATAAGAATGTCCCC  899

seq1  CAT-GGGCTCATATATTTGAATGCCTTATTATCA-GGGAGTGGCACTACT  946
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATGGGGCTCATATATTTGAATGCCTTATTATCAGGGGAGTGGCACTACT  949

seq1  TGAGAA  952
      ||||||
seq2  TGAGAA  955