BAC Information

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BAC

Clone NameB6Ng01-100G03
Chromosome2 (Build37)3 (Build37)
Map Location 142,776,681 - 142,777,69836,925,090 - 36,926,253
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100G03.bB6Ng01-100G03.g
ACCDH909900DH909901
length9861,161
definitionDH909900|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G03, 5' end.DH909901|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,681 - 142,777,698)(36,925,090 - 36,926,253)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttacagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgaccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtataaggagataagtatggatcaattcgc
attcttctacacaataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatgcttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaatttggtgaaaaattgagtttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgggatatctttccatct
tctgagatcttccttaatttctttcttcagagatttgaagtttttatcat
acagatctttcacttccttagagtcacgccaagatattttatattatttg
tgactattgagaagggtgttgtttccctaatttctt
gaattctatactcaatgctataattaaatgagcacataaaagttactcca
tattttgaaacctttaagatttgaattttaatttttctttgaaagttatc
tgaagctatattccagtaagtaaaggaataggccaaatatgctaatatga
aaggttccaaagcaatttgttgtactctgcagaaagggtgcaggaaccct
ctgagcacagtaagagcctgagatggcaacagtggaaactctcaatctta
ctgccacagttgcaatggatcaggctttagaagcaggtaaatttgaaagg
tccttctagctcctcacgagggcacatttctcagtaagacttcatgtata
tgtagatagatagagctacctatctatccatctgccttttatttcattaa
cactctattctcatttcttccaagaacgacttaaaatccccattcactga
tacacacttccctctactattcctatttcctcaactgtatgatatctttc
agtgtctcctattatttttattaagcccaggaggaatattgttctttcct
atatcatagcctataaccatatctctatttttgttttattgacaagtatt
atcatggagaaataattagagcaatataaataaacctatttatatttaga
agaaaacagcaccatataaagttaaatcacattagaaattatggctaggt
atagtattacttacagattaacactttttctgctaatttattattgttat
tattatgattttatatttaaaacagcgccacatgttgcccaggctggagt
agagcctgccatgtagttcagagaaccttaaactcctaatcctcctgcct
ccatctctgaactgctggggtgataggaatgggacgtcatgcttagcttg
ttaatatgaggctggatatataccttagactcacttctagatctgactta
ccacctaaagatctacagtaaatggctactccacgaggtttcctgtaata
ttagaatcttttccctctcacggtcttcatccttttcatccttctcagag
tccttcactggtagaagacagaactgtcgtcccttcgccatcttctggac
tggaaagaacaccttggtgaaaaccgcccgtgggtttggggaaagctgaa
ccctgaaacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776681_142777698
seq2: B6Ng01-100G03.b_45_602 (reverse)

seq1  CAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACAC  50

seq1  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGA  100

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  150
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATTGTGT  150

seq1  AGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  200
      ||||||||| |||| ||||||||||||||||||| |||||||||||||||
seq2  AGAAGAATGCGAATTGATCCATACTTATCTCCTTATACTAAGGTCAAATC  200

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTC  300
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTC  300

seq1  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  350

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  400
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGACCTAATGAAACTCCAAAGTTTCTGTAAGGCAAAAGACACCGTCAATA  400

seq1  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500

seq1  CTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATC  550
      |||||||||||||||||||||||||||||||||||||||| ||       
seq2  CTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA-------  543

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  600
           ||| |||||    |||                             
seq2  ---CTGAACAAAGA----ATTC----------------------------  558

seq1  GTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  650
                                                        
seq2  --------------------------------------------------  558

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  700
                                                        
seq2  --------------------------------------------------  558

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  750
                                                        
seq2  --------------------------------------------------  558

seq1  GGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAA  800
                                                        
seq2  --------------------------------------------------  558

seq1  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  850
                                                        
seq2  --------------------------------------------------  558

seq1  ACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTAC  900
                                                        
seq2  --------------------------------------------------  558

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  950
                                                        
seq2  --------------------------------------------------  558

seq1  AGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  1000
                                                        
seq2  --------------------------------------------------  558

seq1  GAACTGAACAAAGAATTC  1018
                        
seq2  ------------------  558

seq1: chr3_36925090_36926253
seq2: B6Ng01-100G03.g_70_1230 (reverse)

seq1  TCGTGTTCAGTGTTCAGCTCT-CCCAAAACCACAGGCGGCTTTTCACCAA  49
      |||| ||||| |||||||| | |||||| |||| ||||| ||||||||||
seq2  TCGT-TTCAGGGTTCAGCTTTCCCCAAACCCACGGGCGG-TTTTCACCAA  48

seq1  -GTGTTCCTTTCCAGT-CAGAAGATGGCCGAAGGGACGACAG-TCTGTCT  96
       ||||| ||||||||| |||||||||| |||||||||||||| |||||||
seq2  GGTGTT-CTTTCCAGTCCAGAAGATGG-CGAAGGGACGACAGTTCTGTCT  96

seq1  TCTACCAGTGAA-GACTCTGAGAAGGATGAAAAGGATGAAGACCGTGAGA  145
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTACCAGTGAAGGACTCTGAGAAGGATGAAAAGGATGAAGACCGTGAGA  146

seq1  GGG-AAAGATTCTATATTTACAGGAAACCCTCGT-GAGTAGCCATTTACT  193
      ||| ||||||||||   |||||||||| |||||| |||||||||||||||
seq2  GGGAAAAGATTCTAATATTACAGGAAA-CCTCGTGGAGTAGCCATTTACT  195

seq1  GTAAGATCTTTAGGTGGTAAGTCAGAATCTAGAAGTGAGTCTAAGGTATA  243
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GT-AGATCTTTAGGTGGTAAGTCAG-ATCTAGAAGTGAGTCTAAGGTATA  243

seq1  TTATCCAGCCTCATATTTAACAAGCTAAGCATGACGTCCCATTCCTATCA  293
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -TATCCAGCCTCATA-TTAACAAGCTAAGCATGACGTCCCATTCCTATCA  291

seq1  CCCCAGCAGTTCAGAGATGGAGGCAGGAGGATTAGGAGTTTAAGGTTCTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCCAGCAGTTCAGAGATGGAGGCAGGAGGATTAGGAGTTTAAGGTTCT-  340

seq1  CTGAACTACATGGCAGGCTCTACTCCAGCCTGGGCAACATGTGGCGCTGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTACATGGCAGGCTCTACTCCAGCCTGGGCAACATGTGGCGCTGT  390

seq1  TTTAAATATAAAATCATAATAATAACAATAATAAATTAGCAGAAAAAGTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATAAAATCATAATAATAACAATAATAAATTAGCAGAAAAAGTG  440

seq1  TTAATCTGTAAGTAATACTATACCTAGCCATAATTTCTAATGTGATTTAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTGTAAGTAATACTATACCTAGCCATAATTTCTAATGTGATTTAA  490

seq1  CTTTATATGGTGCTGTTTTCTTCTAAATATAAATAGGTTTATTTATATTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGGTGCTGTTTTCTTCTAAATATAAATAGGTTTATTTATATTG  540

seq1  CTCTAATTATTTCTCCATGATAATACTTGTCAATAAAACAAAAATAGAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTATTTCTCCATGATAATACTTGTCAATAAAACAAAAATAGAGA  590

seq1  TATGGTTATAGGCTATGATATAGGAAAGAACAATATTCCTCCTGGGCTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTATAGGCTATGATATAGGAAAGAACAATATTCCTCCTGGGCTTA  640

seq1  ATAAAAATAATAGGAGACACTGAAAGATATCATACAGTTGAGGAAATAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAATAGGAGACACTGAAAGATATCATACAGTTGAGGAAATAGG  690

seq1  AATAGTAGAGGGAAGTGTGTATCAGTGAATGGGGATTTTAAGTCGTTCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGAGGGAAGTGTGTATCAGTGAATGGGGATTTTAAGTCGTTCTT  740

seq1  GGAAGAAATGAGAATAGAGTGTTAATGAAATAAAAGGCAGATGGATAGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAATGAGAATAGAGTGTTAATGAAATAAAAGGCAGATGGATAGAT  790

seq1  AGGTAGCTCTATCTATCTACATATACATGAAGTCTTACTGAGAAATGTGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCTCTATCTATCTACATATACATGAAGTCTTACTGAGAAATGTGC  840

seq1  CCTCGTGAGGAGCTAGAAGGACCTTTCAAATTTACCTGCTTCTAAAGCCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGAGGAGCTAGAAGGACCTTTCAAATTTACCTGCTTCTAAAGCCT  890

seq1  GATCCATTGCAACTGTGGCAGTAAGATTGAGAGTTTCCACTGTTGCCATC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATTGCAACTGTGGCAGTAAGATTGAGAGTTTCCACTGTTGCCATC  940

seq1  TCAGGCTCTTACTGTGCTCAGAGGGTTCCTGCACCCTTTCTGCAGAGTAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTCTTACTGTGCTCAGAGGGTTCCTGCACCCTTTCTGCAGAGTAC  990

seq1  AACAAATTGCTTTGGAACCTTTCATATTAGCATATTTGGCCTATTCCTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTGCTTTGGAACCTTTCATATTAGCATATTTGGCCTATTCCTTT  1040

seq1  ACTTACTGGAATATAGCTTCAGATAACTTTCAAAGAAAAATTAAAATTCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGGAATATAGCTTCAGATAACTTTCAAAGAAAAATTAAAATTCA  1090

seq1  AATCTTAAAGGTTTCAAAATATGGAGTAACTTTTATGTGCTCATTTAATT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAAGGTTTCAAAATATGGAGTAACTTTTATGTGCTCATTTAATT  1140

seq1  ATAGCATTGAGTATAGAATTC  1164
      |||||||||||||||||||||
seq2  ATAGCATTGAGTATAGAATTC  1161