BAC Information

Click to search

BAC

Clone NameB6Ng01-100G08
Chromosome2 (Build37)
Map Location 157,388,455 - 157,521,880
singlet/doubletdoublet
Overlap geneBlcap
Upstream gene0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Nnat
Downstream geneCtnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100G08.bB6Ng01-100G08.g
ACCDH909910DH909911
length999969
definitionDH909910|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G08, 5' end.DH909911|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,388,455 - 157,389,461)(157,520,905 - 157,521,880)
sequence
gaattcatctgtcccagaataagggacattttcccttccccacgatgatg
ggtgaatttatttggtggtgccgagataaggtaccatggcaggttttcta
tctgggaaagatggagagaaaataactgggactggccctctaaatggaat
actaagggtcatacgggttaatttaagaatataaagctataccacagatc
tctctacccaggagccccaggaaatgaatgctgggcaagaagagggggtg
gtggctgggacaatgagcatgaggtgtggcttggcccctcctccaccaag
cttaatgctccagaccccaggatcaccctaaggctggccatcctgtcttg
attttccaaccctccagctggacactccctctcttagttttctcagttca
tccctaagggccttatcagatcgatagcttgccttttcccctcccattgc
agcagggagggtgggctggccccttagttccctttcttggttagccagag
ctgttcacaagtgtcagctgactgcctcaccaaatggtcctgccacctgt
taagcctcatttctggctttacccgtccctgtctctgcacacctgctcct
atgccaatgagttagaaggtcaccagtctctcttgctatttcctcaaact
tcctagtcctggtcatcacattacacactcaggtgcacaaagcacctcaa
agttcttgaaccctgacctgcagatcccccaagaaaccctgattttcaaa
tcaatcactggcacctccctcttctgcagggactttatagtctcattcag
cactagggaattacgggggaaagtagcacagattttggtgtggccttggc
ttttcacccagccaggttgcttttagttccttactaaggtccagatgagc
cccatacacatcaaaaaggcgggattccccagaacttggatgtgaaccca
tttcagggcgggctcctaacagggagaaacaactgctgctaaggctgaa
gaattcatccatttgcccgaggcttaatagtgggctactttcaggtagcg
tacacctgagtaaagctgcttcgtctgtctagcacaagagtgtgtgaaga
atgtgagcggtgggtgtgaacgcttgctgagcaaacaggaaaacgtgagg
ttggatccccagcacctgcagatagagccaggtgtggcacatctgtaatc
ctagcagagagagagagagatgggagatgggaggagccctagggccagcc
tgaatggggtgagctccagattcagtgagagaccctgcctcaagggaata
tagtagcactcggtagaggaggatacccagcatccctggcctccgcacat
agtgcattaacctatacacagatctgcatccatgtgtacaacagacataa
aaagaaaagattctgctttgtgtgagattcaattttagcagcaacagaaa
gattgcaaagaaccagaggttcccccttggttgtctctggaggtggagga
ggaggcagaaagaggctagagttcccagctcagtcagtgtggcttcttgg
ctttgagtccggcggtacccagggtccagtcggcaggatcgggctgatga
tgtggcctccgtgactgagttaagaaagccagttggaagatgcaagaaca
accaaggccttaataggcccaagtcagcgtgggcgatggattcagtgagt
tcctggcctgggccccgaaggcataaccatgagtcaatacaatccccacc
ttgagccttaggcctggcaggaagagcaagccacagttggacaggtgtca
gtggatcccgagggctgtggaagagcagaccgaccaggaaaggccctgga
ggccggtggagggcagatccactgggcctgggtgcgagagtagatgggcg
ctcaggaagactgaaccagcagttgagaaaggctaagcaggctatgtggc
taaaatgcttgcagcgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_157388455_157389461
seq2: B6Ng01-100G08.b_48_1046

seq1  GAATTCATCTGTCCCAGAATAAGGGACATTTTCCCTTCCCCACGATGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTCCCAGAATAAGGGACATTTTCCCTTCCCCACGATGATG  50

seq1  GGTGAATTTATTTGGTGGTGCCGAGATAAGGTACCATGGCAGGTTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTTATTTGGTGGTGCCGAGATAAGGTACCATGGCAGGTTTTCTA  100

seq1  TCTGGGAAAGATGGAGAGAAAATAACTGGGACTGGCCCTCTAAATGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAAGATGGAGAGAAAATAACTGGGACTGGCCCTCTAAATGGAAT  150

seq1  ACTAAGGGTCATACGGGTTAATTTAAGAATATAAAGCTATACCACAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGGTCATACGGGTTAATTTAAGAATATAAAGCTATACCACAGATC  200

seq1  TCTCTACCCAGGAGCCCCAGGAAATGAATGCTGGGCAAGAAGAGGGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCCAGGAGCCCCAGGAAATGAATGCTGGGCAAGAAGAGGGGGTG  250

seq1  GTGGCTGGGACAATGAGCATGAGGTGTGGCTTGGCCCCTCCTCCACCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGGACAATGAGCATGAGGTGTGGCTTGGCCCCTCCTCCACCAAG  300

seq1  CTTAATGCTCCAGACCCCAGGATCACCCTAAGGCTGGCCATCCTGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGCTCCAGACCCCAGGATCACCCTAAGGCTGGCCATCCTGTCTTG  350

seq1  ATTTTCCAACCCTCCAGCTGGACACTCCCTCTCTTAGTTTTCTCAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAACCCTCCAGCTGGACACTCCCTCTCTTAGTTTTCTCAGTTCA  400

seq1  TCCCTAAGGGCCTTATCAGATCGATAGCTTGCCTTTTCCCCTCCCATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAGGGCCTTATCAGATCGATAGCTTGCCTTTTCCCCTCCCATTGC  450

seq1  AGCAGGGAGGGTGGGCTGGCCCCTTAGTTCCCTTTCTTGGTTAGCCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAGGGTGGGCTGGCCCCTTAGTTCCCTTTCTTGGTTAGCCAGAG  500

seq1  CTGTTCACAAGTGTCAGCTGACTGCCTCACCAAATGGTCCTGCCACCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCACAAGTGTCAGCTGACTGCCTCACCAAATGGTCCTGCCACCTGT  550

seq1  TAAGCCTCATTTCTGGCTTTACCCGTCCCTGTCTCTGCACACCTGCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTCATTTCTGGCTTTACCCGTCCCTGTCTCTGCACACCTGCTCCT  600

seq1  ATGCCAATGAGTTAGAAGGTCACCAGTCTCTCTTGCTATTTCCTCAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATGAGTTAGAAGGTCACCAGTCTCTCTTGCTATTTCCTCAAACT  650

seq1  TCCTAGTCCTGGTCATCACATTACACACTCAGGTGCACAAAGCACCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTCCTGGTCATCACATTACACACTCAGGTGCACAAAGCACCTCAA  700

seq1  AGTTCTTGAACCCTGACCTGCAGATCCCCCAAGAAACCCTGATTTTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGAACCCTGACCTGCAGATCCCCCAAGAAACCCTGATTTTCAAA  750

seq1  TCAATCACTGGCACCTCCCTCTTCTGCAGGGACTTTATAGTCTCATTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCACTGGCACCTCCCTCTTCTGCAGGGACTTTATAGTCTCATTCAG  800

seq1  CACTAGGGAATTACGGGGGAAAGTAGCACAGATTTTGGTGTGGCCTTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGGAATTACGGGGGAAAGTAGCACAGATTTTGGTGTGGCCTTGGC  850

seq1  TTTTCCACCCAGCCAGGTTGCTTTTAGTTCCCTACTAAGGTCCAGATGAG  900
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTT-CACCCAGCCAGGTTGCTTTTAGTTCCTTACTAAGGTCCAGATGAG  899

seq1  CCCCATACACATCAGAGAGGCGGGATTCCACAGGACTTGGATGTGAAACC  950
      |||||||||||||| | |||||||||||| ||| ||||||||||| ||||
seq2  CCCCATACACATCAAAAAGGCGGGATTCCCCAGAACTTGGATGTG-AACC  948

seq1  CATTCCAAGGCGCGGTCTTCCTTAGCAGGGTAGATACAGCTGCTGCTAAG  1000
      |||| || |||| | |    | || ||||| ||| ||| |||||||||||
seq2  CATTTCAGGGCGGGCT----CCTAACAGGG-AGAAACAACTGCTGCTAAG  993

seq1  GCCTGAA  1007
      | |||||
seq2  G-CTGAA  999

seq1: chr2_157520905_157521880
seq2: B6Ng01-100G08.g_69_1037 (reverse)

seq1  GAGCGCTGCCAGCCATCTTAGCCACCTAAGCCTGCCTTGGCCTTTCCTCA  50
      ||||||||| || ||| |||||||| | |||||| ||| |||||| ||||
seq2  GAGCGCTGCAAG-CATTTTAGCCACAT-AGCCTG-CTTAGCCTTT-CTCA  46

seq1  ACCTGCTGGTTCAGTTCTTCCTGAGCGCCCATCTACTCCTCGCACCCAGG  100
      | |||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  A-CTGCTGGTTCAG-TCTTCCTGAGCGCCCATCTACT-CTCGCACCCAGG  93

seq1  CCCAGTGGATCCTGCCCTCCACCGGCCTCCAGGGCCCTTTCCTGGTCGGT  150
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  CCCAGTGGAT-CTGCCCTCCACCGGCCTCCAGGG-CCTTTCCTGGTCGGT  141

seq1  CTGCTCTTCCACAGCCCTC-GGATCCACTGACACCTGTCCAACTGTGGCT  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCACAGCCCTCGGGATCCACTGACACCTGTCCAACTGTGGCT  191

seq1  TGCTCTTCCTGCCAGGCCTAAGGCTCAAGGTGGGGATTGTATTGACTCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCTGCCAGGCCTAAGGCTCAAGGTGGGGATTGTATTGACTCAT  241

seq1  GGTTATGCCTTCGGGGCCCAGGCCAGG-ACTCACTGAATCCATCGCCCAC  298
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTTATGCCTTCGGGGCCCAGGCCAGGAACTCACTGAATCCATCGCCCAC  291

seq1  GCTGACTTGGGCCTATTAAGGCCTTGGTTGTTCTTGCATCTTCCAACTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTTGGGCCTATTAAGGCCTTGGTTGTTCTTGCATCTTCCAACTGG  341

seq1  CTTTCTTAACTCAGTCACGGAGGCCACATCATCAGCCCGATCCTGCCGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAACTCAGTCACGGAGGCCACATCATCAGCCCGATCCTGCCGAC  391

seq1  TGGACCCTGGGTACCGCCGGACTCAAAGCCAAGAAGCCACACTGACTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCTGGGTACCGCCGGACTCAAAGCCAAGAAGCCACACTGACTGAG  441

seq1  CTGGGAACTCTAGCCTCTTTCTGCCTCCTCCTCCACCTCCAGAGACAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACTCTAGCCTCTTTCTGCCTCCTCCTCCACCTCCAGAGACAACC  491

seq1  AAGGGGGAACCTCTGGTTCTTTGCAATCTTTCTGTTGCTGCTAAAATTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAACCTCTGGTTCTTTGCAATCTTTCTGTTGCTGCTAAAATTGA  541

seq1  ATCTCACACAAAGCAGAATCTTTTCTTTTTATGTCTGTTGTACACATGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACACAAAGCAGAATCTTTTCTTTTTATGTCTGTTGTACACATGGA  591

seq1  TGCAGATCTGTGTATAGGTTAATGCACTATGTGCGGAGGCCAGGGATGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATCTGTGTATAGGTTAATGCACTATGTGCGGAGGCCAGGGATGCT  641

seq1  GGGTATCCTCCTCTACCGAGTGCTACTATATTCCCTTGAGGCAGGGTCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCCTCCTCTACCGAGTGCTACTATATTCCCTTGAGGCAGGGTCTC  691

seq1  TCACTGAATCTGGAGCTCACCCCATTCAGGCTGGCCCTAGGGCTCCTCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAATCTGGAGCTCACCCCATTCAGGCTGGCCCTAGGGCTCCTCCC  741

seq1  ATCTCCCATCTCTCTCTCTCTCTGCTAGGATTACAGATGTGCCACACCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCATCTCTCTCTCTCTCTGCTAGGATTACAGATGTGCCACACCTG  791

seq1  GCTCTATCTGCAGGTGCTGGGGATCCAACCTCACGTTTTCCTGTTTGCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATCTGCAGGTGCTGGGGATCCAACCTCACGTTTTCCTGTTTGCTC  841

seq1  AGCAAGCGTTCACACCCACCGCTCACATTCTTCACACACTCTTGTGCTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCGTTCACACCCACCGCTCACATTCTTCACACACTCTTGTGCTAG  891

seq1  ACAGACGAAGCAGCTTTACTCAGGTGTACGCTACCTGAAAGTAGCCCACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGAAGCAGCTTTACTCAGGTGTACGCTACCTGAAAGTAGCCCACT  941

seq1  ATTAAGCCTCGGGCAAATGGATGAATTC  976
      ||||||||||||||||||||||||||||
seq2  ATTAAGCCTCGGGCAAATGGATGAATTC  969