BAC Information

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BAC

Clone NameB6Ng01-100I04
Chromosome2 (Build37)
Map Location 57,458,190 - 57,584,825
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
Downstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100I04.bB6Ng01-100I04.g
ACCDH909990DH909991
length1,0451,128
definitionDH909990|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I04, 5' end.DH909991|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,584,276 - 57,584,825)(57,458,190 - 57,459,327)
sequence
gaattcaaagaagtaacaaatgaaatacatacagaattaaagataatgat
aagaaatttagtggaactccagagctgggaactcacctgaaaggagaagt
ttgccaggtgtaagttagaagaatagacactccgctctggtatgtgccac
ccaaacactgcaggctatatctggctacctgctggatagctggccaaaga
atgctatgaatgtggctaatcataacctcacttaaaacattgtaagcctg
ctctctgaaatttcctcccttcacctcttccaatgacccaatatcacatt
ctctgtggccctttaaaaaccaacaaccaaacataccaccttgtcactcc
agttgtttccatcatcaggtattctgtcttggtcacgaaaagtaacatcc
agaacttatttaaagggttgctttagttatcctgttttgtagttgttgtt
tgtttgtttgtatgaatttgagaatttctctttcaaagtctgtaaaagaa
ttgtgctggaattttgatgggcattgtattgagtctatagatggcttttt
gtaagatggctattttgactatataaatcctacccatcaatgagcatgag
atctttccaccttctggcattttcttcagtttcttccttcagggaattaa
agttcttgtcatgcagatctttcaattgcttggttagcattacaccaagc
tattttatactattttgtggctattgtgaacggtattgtttgcctaattt
ctttctcagcccatttatcatttgtataaaggtgtgcaactggtttttca
gttaattgtgtgtccagccactttactgaaggggtttatcagctacagaa
gttctctggtagaatttttgcaataacttatgtatactattatattatct
gcaagtagagagactttgatttctcccctttgcacttgtatctcttgata
tcttttagtggtcttattgctctagctagaacttcaagaactatattgaa
agattaggaagaagggtgggcagccttgtcttctcatgattttag
gaattcttttgcaaaaacgtttaattcttttcagaagtttccaaaaccat
tgaacaaagcaaaaatagagatagtacacatttaatggtattactcaaac
tatgcacagttcagaatgtagcattcacttaatagagattctccttggtg
gactattagattacaggtaccttgttagtgcagggaacatatgctttctc
tggacttataaggagagtccctactaacaaggctcatctcagaggacagg
agcattatctacctaaaccaggatccattgtggggcaggctgtgatgtgt
tcatagtagctcctgagacagatgtgtgagaatgtggcctacttagactg
taattatcttcagtgaatagaatcctcaacagatgacaagtctagatgca
agtcatttgctgttgctgtgaatttaatccatttaccgttgctgtaagtt
taatccatttacagttgttgtaagtttaatctattatagttgaattccag
tattttatgagatttttatctggtctgtaactcaggtatatagacagggc
tataatcaaagttacagagattcacctctctctatttaccaagagctgaa
attaaaggcatacaccacttaccctggtctacaatttcttgattgttgac
taatttgggaaggtctagtccactgtgggtagtgcagctcttgatgctgg
tcctggattctatagaaggtcaagatgaggaaaccatggagaaccaggga
gtcagcaacactccaaaatagtctctgcttcaattctctcttctaggtcc
ctcccttgacttccctcagtcacggactgtgatctttaatccaaatgaac
cctttccttcccaagtaatttttggtgatggtgtttatcacaaaaataga
aagcaagctaggatggacagagtgtgatgccaactgagccttttaaatgt
agacacttagttcatgagagcagttcaaattttctgcatcgcatccactt
cccagtgatgctggtgagctgaaaatagattttacttctcttcatcctga
ctcaaagtatagagttccttgctgcaaaggtggggagccaggtgcctctg
ctttcagacctgccttgaacttgctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_57584276_57584825
seq2: B6Ng01-100I04.b_47_596 (reverse)

seq1  AAAAAGCCATCTATAGACTCAATACAATGCCCATCAAAATTCCAGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCATCTATAGACTCAATACAATGCCCATCAAAATTCCAGCACAA  50

seq1  TTCTTTTACAGACTTTGAAAGAGAAATTCTCAAATTCATACAAACAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTACAGACTTTGAAAGAGAAATTCTCAAATTCATACAAACAAACA  100

seq1  AACAACAACTACAAAACAGGATAACTAAAGCAACCCTTTAAATAAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACTACAAAACAGGATAACTAAAGCAACCCTTTAAATAAGTTCT  150

seq1  GGATGTTACTTTTCGTGACCAAGACAGAATACCTGATGATGGAAACAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTACTTTTCGTGACCAAGACAGAATACCTGATGATGGAAACAACT  200

seq1  GGAGTGACAAGGTGGTATGTTTGGTTGTTGGTTTTTAAAGGGCCACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGACAAGGTGGTATGTTTGGTTGTTGGTTTTTAAAGGGCCACAGAG  250

seq1  AATGTGATATTGGGTCATTGGAAGAGGTGAAGGGAGGAAATTTCAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATATTGGGTCATTGGAAGAGGTGAAGGGAGGAAATTTCAGAGAG  300

seq1  CAGGCTTACAATGTTTTAAGTGAGGTTATGATTAGCCACATTCATAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTACAATGTTTTAAGTGAGGTTATGATTAGCCACATTCATAGCAT  350

seq1  TCTTTGGCCAGCTATCCAGCAGGTAGCCAGATATAGCCTGCAGTGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCCAGCTATCCAGCAGGTAGCCAGATATAGCCTGCAGTGTTTGG  400

seq1  GTGGCACATACCAGAGCGGAGTGTCTATTCTTCTAACTTACACCTGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACATACCAGAGCGGAGTGTCTATTCTTCTAACTTACACCTGGCAA  450

seq1  ACTTCTCCTTTCAGGTGAGTTCCCAGCTCTGGAGTTCCACTAAATTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTTTCAGGTGAGTTCCCAGCTCTGGAGTTCCACTAAATTTCTT  500

seq1  ATCATTATCTTTAATTCTGTATGTATTTCATTTGTTACTTCTTTGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATCTTTAATTCTGTATGTATTTCATTTGTTACTTCTTTGAATTC  550

seq1: chr2_57458190_57459327
seq2: B6Ng01-100I04.g_71_1198

seq1  GAATTCTTTTGCAAAAACGTTTAATTCTTTTCAGAAGTTTCCAAAACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCAAAAACGTTTAATTCTTTTCAGAAGTTTCCAAAACCAT  50

seq1  TGAACAAAGCAAAAATAGAGATAGTACACATTTAATGGTATTACTCAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAGCAAAAATAGAGATAGTACACATTTAATGGTATTACTCAAAC  100

seq1  TATGCACAGTTCAGAATGTAGCATTCACTTAATAGAGATTCTCCTTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACAGTTCAGAATGTAGCATTCACTTAATAGAGATTCTCCTTGGTG  150

seq1  GACTATTAGATTACAGGTACCTTGTTAGTGCAGGGAACATATGCTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTAGATTACAGGTACCTTGTTAGTGCAGGGAACATATGCTTTCTC  200

seq1  TGGACTTATAAGGAGAGTCCCTACTAACAAGGCTCATCTCAGAGGACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTATAAGGAGAGTCCCTACTAACAAGGCTCATCTCAGAGGACAGG  250

seq1  AGCATTATCTACCTAAACCAGGATCCATTGTGGGGCAGGCTGTGATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATCTACCTAAACCAGGATCCATTGTGGGGCAGGCTGTGATGTGT  300

seq1  TCATAGTAGCTCCTGAGACAGATGTGTGAGAATGTGGCCTACTTAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTAGCTCCTGAGACAGATGTGTGAGAATGTGGCCTACTTAGACTG  350

seq1  TAATTATCTTCAGTGAATAGAATCCTCAACAGATGACAAGTCTAGATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATCTTCAGTGAATAGAATCCTCAACAGATGACAAGTCTAGATGCA  400

seq1  AGTCATTTGCTGTTGCTGTGAATTTAATCCATTTACCGTTGCTGTAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTGCTGTTGCTGTGAATTTAATCCATTTACCGTTGCTGTAAGTT  450

seq1  TAATCCATTTACAGTTGTTGTAAGTTTAATCTATTATAGTTGAATTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCATTTACAGTTGTTGTAAGTTTAATCTATTATAGTTGAATTCCAG  500

seq1  TATTTTATGAGATTTTTATCTGGTCTGTAACTCAGGTATATAGACAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGAGATTTTTATCTGGTCTGTAACTCAGGTATATAGACAGGGC  550

seq1  TATAATCAAAGTTACAGAGATTCACCTCTCTCTATTTACCAAGAGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCAAAGTTACAGAGATTCACCTCTCTCTATTTACCAAGAGCTGAA  600

seq1  ATTAAAGGCATACACCACTTACCCTGGTCTACAATTTCTTGATTGTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCATACACCACTTACCCTGGTCTACAATTTCTTGATTGTTGAC  650

seq1  TAATTTGGGAAGGTCTAGTCCACTGTGGGTAGTGCAGCTCTTGATGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGGAAGGTCTAGTCCACTGTGGGTAGTGCAGCTCTTGATGCTGG  700

seq1  TCCTGGATTCTATAGAAGGTCAAGATGAGGAAACCATGGAGAACCAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATTCTATAGAAGGTCAAGATGAGGAAACCATGGAGAACCAGGGA  750

seq1  GTCAGCAACACTCCAAAATAGTCTCTGCTTCAATTCTCTCTTCTAGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAACACTCCAAAATAGTCTCTGCTTCAATTCTCTCTTCTAGGTCC  800

seq1  CTCCCTTGACTTCCCTCAGTCACGGACTGTGATCTTTAATCCAAATGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGACTTCCCTCAGTCACGGACTGTGATCTTTAATCCAAATGAAC  850

seq1  CCTTTCCTTCCCAAGTAATTTTTGGTGATGGTGTTTATCACAAAAATAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTCCCAAGTAATTTTTGGTGATGGTGTTTATCACAAAAATAGA  900

seq1  AAGCAAGCTAGGATGGACAAGAGTGTGATGCCAACTGAGCCTTTTTAAAT  950
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  AAGCAAGCTAGGATGGAC-AGAGTGTGATGCCAACTGAGCC-TTTTAAAT  948

seq1  GTAGACACTTAGTTCATGAGGAGCAAGTTCAAATATTCTGCATCGCCATC  1000
      ||||||||||||||||||| |||| ||||||||| |||||||||| ||||
seq2  GTAGACACTTAGTTCATGA-GAGC-AGTTCAAATTTTCTGCATCG-CATC  995

seq1  CACTTCCCAGGTGATGCCTGGTGAGCTGAGAATAGATTTTTACTTCTCTT  1050
      ||||||||| |||||| |||||||||||| |||||| |||||||||||||
seq2  CACTTCCCA-GTGATG-CTGGTGAGCTGAAAATAGA-TTTTACTTCTCTT  1042

seq1  CAATCCTGACTCAAAGTATAGGAGTTCTCTGCTGGCAAAAGGTGTGAGCC  1100
      | |||||||||||||||||| ||||||  |||| ||||| |  | |||||
seq2  C-ATCCTGACTCAAAGTATA-GAGTTCCTTGCT-GCAAAGGTGGGGAGCC  1089

seq1  A-GTGGCTCTGCTTTCAGACCTGCC-TGAACTTGCCTACT  1138
      | ||| ||||||||||||||||||| |||||||| |||||
seq2  AGGTGCCTCTGCTTTCAGACCTGCCTTGAACTTG-CTACT  1128