BAC Information

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BAC

Clone NameB6Ng01-100K09
Chromosome2 (Build37)
Map Location 120,778,889 - 120,887,079
singlet/doubletdoublet
Overlap geneUbr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5
Upstream geneMga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2
Downstream geneLOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100K09.bB6Ng01-100K09.g
ACCDH910083DH910084
length1,0561,237
definitionDH910083|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K09, 5' end.DH910084|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,886,026 - 120,887,079)(120,778,889 - 120,780,154)
sequence
gaattctataaaaatcattaccaggaattacaaaaatcatcaattcatcc
acacaacactactacatgaaagaacatcttcatattgattcttcaggaaa
catgcccagtagcgtggactatgcccaggaatcattaggctatgtaatag
tgacaggaaatgcatatcagcagcaagcagccatcctgggaaaaagcctg
tgaggaccctgcatctcagagcacacccatggcagccatgtaaatggtga
gccatctccagaaaactcactcgcttgctatagactttcctagatagctt
ctgacaattgttgaactgaatttttttttaatccattaaaggcttttgct
gtgatagaccataaggattttgcatatcaatttgagtctttggagacttc
cttttagttttgttttgatggttttagaaacagtctttatgtctattcta
gtttgtgctagtaggtcatgactcttcatgaccctaaaggatgcatgtag
catgaggcctccattctgtcacttcacctgggcttctggaactttgttcc
cacactgaaggggctccactgcaaagcttgggagaactcccttcagatct
gtccctcttctgtcctatgctaccccacaagctctaggcacctcaccttt
gcttcccagaactgtgagctcatccctcgaacgcctgggggctactttgg
tccatcctccctgccttacagcctggaagctgcttggaggatttgcctgt
tggaatgtctgatgttttctcatgattgagttaaatgattgtcttcaggg
aaggaagaccaaaaagatagaacaccgttgccatgccattcactaaggga
ccgtgtcactgaacagtactgtttaccagttctggtgctgaccttgatac
atggccatagtggtttgccttttgtatgtacaaagtggcagagagagtac
actttttctgtcatttgtttgcacagccagctatgatatagactacacat
taggctggttatgtgtcttttctgtcttattaatctagaatagatttgtt
cctgaa
gaattctataaacaggttaagaagtcagttaggatcaacacaagaaagtt
atgaaacagatgaaagtatcagtaattttgagagaaaattaagggagaat
ttggcaaggaaacatgcaaaaaaagagccaaaccaaattctggaaatgaa
agaaaaaaaccaaagtcacagcagaccaggaccaagggctaaggactagt
tccagaggggggcaccagttgggacaataacacatacaggcttacagaaa
gaaaaaaaaattatgaagataaccaaaacttccaagaagtccgggataca
tcaagaaatctaacctagaatccatggcctagcttaaggagttatggcaa
atcatgtaaagaggcttagacaaactattttttaaattataattaagaat
ttcctagagaagaatttctccacggcatatttaaattaaaacaaactaaa
caaacaaaaaacacaaaatactaatatctgtaaaagaacacactaactca
cattcagaggcagaaagatcagaacaacattaatctttcattagcagtcc
tcaaagtcagaaaaagtatggccctgaaactgtcaaccaaaattgctatc
cttccctgaaaagttatctattaaagttgacagagaaataagagtattct
agcacaggaatttcttagagaaactgttatcaccaagaaattcacataac
tagcaaagacatccaaaaactggggagtcaaaatttagaaataagcccac
caatcaaagggaaattataaacaagctggtgtagcgattcttgtatctga
atgagaatccccatatattaagaaagggaacaattaagagattataacta
ttgtaaataatctatgcaccaaatctcagagccacttatctcataaagca
aattttaaaggcttaccaggccatataggaacattcacaacaacagtggg
gagacttcataaccaactctacacctagagaggtcttcaaacaaaggcat
cagagagcatcatctggccctagatgtggtcagtgcttacgaggagatct
aagatcattcaagggcacacaaggtatgtatctttgaacttcatgttatc
ttatgaaactttctggacccggtgtctggaagaaatctatatgtgacatt
atgtccaagagttaatgggtacatcagatctgcctgtttgaggtaccttg
catgctggtaaaccactcatttatagctggatgtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120886026_120887079
seq2: B6Ng01-100K09.b_49_1090 (reverse)

seq1  TATTCTAGATTAAATAAGACAGAAAAGACACAATAACCAGGCCTAATGTG  50
      ||||||||||| ||||||||||||||||||| ||||||| ||||||||||
seq2  TATTCTAGATT-AATAAGACAGAAAAGACAC-ATAACCA-GCCTAATGTG  47

seq1  TAGTTCTATATCATATGCTGGCTTGTGCAAACAAATTGTACAGAAAAAGT  100
      ||| ||||||||||| |||||| |||||||||||||   |||||||||| 
seq2  TAG-TCTATATCATA-GCTGGC-TGTGCAAACAAAT--GACAGAAAAAG-  91

seq1  TGTACTCCTTCTCCTGCCACCTTGTACATACAAAAGGCAAACCACTATGG  150
      |||||||  ||| ||||||| |||||||||||||||||||||||||||||
seq2  TGTACTC--TCT-CTGCCACTTTGTACATACAAAAGGCAAACCACTATGG  138

seq1  CCATGTATCAAGGTCAGCACCAGAACTGGTAAACAGTACTGTTCAGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATCAAGGTCAGCACCAGAACTGGTAAACAGTACTGTTCAGTGAC  188

seq1  ACGGTCCCTTAGTGAATGGCATGGCAACGGTGTTCTATCTTTTTGGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCCCTTAGTGAATGGCATGGCAACGGTGTTCTATCTTTTTGGTCTT  238

seq1  CCTTCCCTGAAGACAATCATTTAACTCAATCATGAGAAAACATCAGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTGAAGACAATCATTTAACTCAATCATGAGAAAACATCAGACAT  288

seq1  TCCAACAGGCAAATCCTCCAAGCAGCTTCCAGGCTGTAAGGCAGGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAGGCAAATCCTCCAAGCAGCTTCCAGGCTGTAAGGCAGGGAGGA  338

seq1  TGGACCAAAGTAGCCCCCAGGCGTTCGAGGGATGAGCTCACAGTTCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAAAGTAGCCCCCAGGCGTTCGAGGGATGAGCTCACAGTTCTGGG  388

seq1  AAGCAAAGGTGAGGTGCCTAGAGCTTGTGGGGTAGCATAGGACAGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGGTGAGGTGCCTAGAGCTTGTGGGGTAGCATAGGACAGAAGAG  438

seq1  GGACAGATCTGAAGGGAGTTCTCCCAAGCTTTGCAGTGGAGCCCCTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATCTGAAGGGAGTTCTCCCAAGCTTTGCAGTGGAGCCCCTTCAG  488

seq1  TGTGGGAACAAAGTTCCAGAAGCCCAGGTGAAGTGACAGAATGGAGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAACAAAGTTCCAGAAGCCCAGGTGAAGTGACAGAATGGAGGCCT  538

seq1  CATGCTACATGCATCCTTTAGGGTCATGAAGAGTCATGACCTACTAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTACATGCATCCTTTAGGGTCATGAAGAGTCATGACCTACTAGCAC  588

seq1  AAACTAGAATAGACATAAAGACTGTTTCTAAAACCATCAAAACAAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAATAGACATAAAGACTGTTTCTAAAACCATCAAAACAAAACTA  638

seq1  AAAGGAAGTCTCCAAAGACTCAAATTGATATGCAAAATCCTTATGGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGTCTCCAAAGACTCAAATTGATATGCAAAATCCTTATGGTCTA  688

seq1  TCACAGCAAAAGCCTTTAATGGATTAAAAAAAAATTCAGTTCAACAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAAAAGCCTTTAATGGATTAAAAAAAAATTCAGTTCAACAATTG  738

seq1  TCAGAAGCTATCTAGGAAAGTCTATAGCAAGCGAGTGAGTTTTCTGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCTATCTAGGAAAGTCTATAGCAAGCGAGTGAGTTTTCTGGAGA  788

seq1  TGGCTCACCATTTACATGGCTGCCATGGGTGTGCTCTGAGATGCAGGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACCATTTACATGGCTGCCATGGGTGTGCTCTGAGATGCAGGGTC  838

seq1  CTCACAGGCTTTTTCCCAGGATGGCTGCTTGCTGCTGATATGCATTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGCTTTTTCCCAGGATGGCTGCTTGCTGCTGATATGCATTTCCT  888

seq1  GTCACTATTACATAGCCTAATGATTCCTGGGCATAGTCCACGCTACTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTATTACATAGCCTAATGATTCCTGGGCATAGTCCACGCTACTGGG  938

seq1  CATGTTTCCTGAAGAATCAATATGAAGATGTTCTTTCATGTAGTAGTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCCTGAAGAATCAATATGAAGATGTTCTTTCATGTAGTAGTGTT  988

seq1  GTGTGGATGAATTGATGATTTTTGTAATTCCTGGTAATGATTTTTATAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGATGAATTGATGATTTTTGTAATTCCTGGTAATGATTTTTATAGA  1038

seq1  ATTC  1054
      ||||
seq2  ATTC  1042

seq1: chr2_120778889_120780154
seq2: B6Ng01-100K09.g_67_1303

seq1  GAATTCTATAAACAGGTTAAGAAGTCAGTTAGGATCAACACAAGAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAACAGGTTAAGAAGTCAGTTAGGATCAACACAAGAAAGTT  50

seq1  ATGAAACAGATGAAAGTATCAGTAATTTTGAGAGAAAATTAAGGGAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAGATGAAAGTATCAGTAATTTTGAGAGAAAATTAAGGGAGAAT  100

seq1  TTGGCAAGGAAACATGCAAAAAAAGAGCCAAACCAAATTCTGGAAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAGGAAACATGCAAAAAAAGAGCCAAACCAAATTCTGGAAATGAA  150

seq1  AGAAAAAAACCAAAGTCACAGCAGACCAGGACCAAGGGCTAAGGACTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAACCAAAGTCACAGCAGACCAGGACCAAGGGCTAAGGACTAGT  200

seq1  TCCAGAGGGGGGCACCAGTTGGGACAATAACACATACAGGCTTACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGGGGGCACCAGTTGGGACAATAACACATACAGGCTTACAGAAA  250

seq1  GAAAAAAAAATTATGAAGATAACCAAAACTTCCAAGAAGTCCGGGATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAATTATGAAGATAACCAAAACTTCCAAGAAGTCCGGGATACA  300

seq1  TCAAGAAATCTAACCTAGAATCCATGGCCTAGCTTAAGGAGTTATGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAATCTAACCTAGAATCCATGGCCTAGCTTAAGGAGTTATGGCAA  350

seq1  ATCATGTAAAGAGGCTTAGACAAACTATTTTTTAAATTATAATTAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTAAAGAGGCTTAGACAAACTATTTTTTAAATTATAATTAAGAAT  400

seq1  TTCCTAGAGAAGAATTTCTCCACGGCATATTTAAATTAAAACAAACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGAGAAGAATTTCTCCACGGCATATTTAAATTAAAACAAACTAAA  450

seq1  CAAACAAAAAACACAAAATACTAATATCTGTAAAAGAACACACTAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAACACAAAATACTAATATCTGTAAAAGAACACACTAACTCA  500

seq1  CATTCAGAGGCAGAAAGATCAGAACAACATTAATCTTTCATTAGCAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGAGGCAGAAAGATCAGAACAACATTAATCTTTCATTAGCAGTCC  550

seq1  TCAAAGTCAGAAAAAGTATGGCCCTGAAACTGTCAACCAAAATTGCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCAGAAAAAGTATGGCCCTGAAACTGTCAACCAAAATTGCTATC  600

seq1  CTTCCCTGAAAAGTTATCTATTAAAGTTGACAGAGAAATAAGAGTATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGAAAAGTTATCTATTAAAGTTGACAGAGAAATAAGAGTATTCT  650

seq1  AGCACAGGAATTTCTTAGAGAAACTGTTATCACCAAGAAATTCACATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGAATTTCTTAGAGAAACTGTTATCACCAAGAAATTCACATAAC  700

seq1  TAGCAAAGACATCCAAAAACT-GGGAGTCAAAATTTAGAAATAAGCCCAC  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGCAAAGACATCCAAAAACTGGGGAGTCAAAATTTAGAAATAAGCCCAC  750

seq1  CAATCAAAGGGAAATTATAAACAAGCTGGTGTAGCGATTCTTGTATCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAAGGGAAATTATAAACAAGCTGGTGTAGCGATTCTTGTATCTGA  800

seq1  ATGAGAATCCCCATATATTAAGAAAGGGAACAATTAAGAGATTATAACTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATCCCCATATATTAAGAAAGGGAACAATTAAGAGATTATAACTA  850

seq1  TTGTAAATAATCTATGCACCAAATCTCAGAGCCACTTATCTCATAAAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATAATCTATGCACCAAATCTCAGAGCCACTTATCTCATAAAGCA  900

seq1  AATTTTAAAGGCTTACCAGGCCATATAGGAACATTCACAACAACAGT-GG  948
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATTTTAAAGGCTTACCAGGCCATATAGGAACATTCACAACAACAGTGGG  950

seq1  GAGACTTCAATAACCAACTCTAACACCTAGAGAGGTCTTCAAACAAAGGC  998
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  GAGACTTC-ATAACCAACTCT-ACACCTAGAGAGGTCTTCAAACAAAGGC  998

seq1  ATCAGAGAGCATCATCTGGCCCTAAGATGTGGTCAGTGCTTACGAGGAGA  1048
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCAGAGAGCATCATCTGGCCCT-AGATGTGGTCAGTGCTTACGAGGAGA  1047

seq1  TCTAGAATCATTCAAAGGGCACACAAAGTATGTATTCCTTGAAACTTTCC  1098
      ||||  ||||||| |||||||||||| ||||||||  |||  |||||  |
seq2  TCTAAGATCATTC-AAGGGCACACAAGGTATGTAT--CTTTGAACTT--C  1092

seq1  ATGGTTTATC-TATGAAACTGTCTGGACGCGGTGTCTGGAAAGAAATACT  1147
      |||  ||||| ||||||||| ||||||| |||||||||| ||||||| ||
seq2  ATG--TTATCTTATGAAACTTTCTGGACCCGGTGTCTGG-AAGAAAT-CT  1138

seq1  ATATTGTGACTATTATGTCAAGTAGTTTAATGGTTACCTACCAAGTATTC  1197
      ||| |||||| |||||||| |  || ||||||| |||  | ||  | |  
seq2  ATA-TGTGAC-ATTATGTCCAAGAG-TTAATGGGTAC--ATCAGATCT--  1181

seq1  CCTTGGCTTGTTTTGAATGGTACTTTGCATTGTCTGATAAAACAATTCAT  1247
           || || |||||  ||||| ||||||   ||| | |||| | ||| 
seq2  -----GCCTG-TTTGA--GGTACCTTGCAT--GCTGGT-AAACCACTCA-  1219

seq1  TTTTATAGCTGGATGTAGT  1266
       ||||||||||||||||||
seq2  -TTTATAGCTGGATGTAGT  1237