BAC Information

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BAC

Clone NameB6Ng01-101C09
Chromosome2 (Build37)
Map Location 133,352,907 - 133,481,318
singlet/doubletdoublet
Overlap geneBmp2
Upstream genePrei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik
Downstream geneHao1, Txndc13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101C09.bB6Ng01-101C09.g
ACCDH910428DH910429
length9751,092
definitionDH910428|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C09, 5' end.DH910429|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,352,907 - 133,353,883)(133,480,206 - 133,481,318)
sequence
gaattccatgaatttaattagagaacgcactcttgcactaggcttcctta
ccttggtattcggtttgggatctccctcttctgtactgagggctattctg
tttctgctttccacagtgcattcagaggtgtgcatacttgttctcctgat
cgcattctggaaacgtccacagctgatctccacccttcaggcagtgtccg
agagacccagaggacccttgtcctagccatgctcttctccgtgcttactt
aagctcttcagtgaactttcctgttctacacacacatcccacacctcctt
gtttgcatttccatgcaatccccactcctcccttagcctcaccagagcca
agcctgtcatcgagtcttccatgtcggaagaagactttcttctgtactgc
tgttcccccagtattttccccaccctccttcatgttctgagttctgtgta
acccatgcatgttgctatctcacttgtacctggaaagccaccaggtagag
atttattctattgcagccatgttgttcttccatttcaaccagaggcagag
tttcccaggatagcacacaactcttcgggttccttttgtacacacaaaca
tacgaatcccacttcagaggagagtgcaccagggtcccattgctctgtgc
gttgtagtttttgtcaagtccctctgatgttttgtagttttagtgtagat
acttaatactgattaaaaccactcaagaaattaaataggataggatgttg
agtgatgtggctacaataaagaaccaaggtcttaaggttagggtaggact
gtttttcagtttcagacctgtgttattatttttgctcatcactctgacaa
acacttgagggcaataggcaagttaagggaagaggggattactctatcat
agggaaggtataatactggatgactcaagtggtagaagtgtatttgctgc
catttggtcacctcttaggagacaa
gaattctttaggcatttccttcaagcactcagagagttgagctttcaagc
attaaaatggtgaaattaccaaaggttttttttttttttaaaatcaggac
agaatacaattacagtagagcttacagtggatacacatcaagtcagaacc
ctcagatggaaccgagggaaactcaaggctttaagtcaaaatgtgaaagt
tcacattcaggaggcagctgctggaaaacctccccactttgtactgtgcc
gaataacactagtcacagtattattatctgggactggcagacagactcca
gaaccaacgatcacttgttttgaaagacagagctgggtcatgcaggtagt
attgctccaactccaagcacttaattttcttatcttttctgccttttccc
tatccatttttattttactttctcttttcttctctccccctccttttcac
tttgtttcttgccttcagctttccctgttttttttttcttccccttcttc
ttttcactctccctcactatctttaaacttcaagttaatggctagcccca
ggtccactaagatcataaaacgaccaagtaaagttcctcatgtgtccatt
taaagtacaacctgaaaggtgttcctaaagaagaaaatgatgtcactctg
agatctagtgaccaatcaagcacatctttgcttttttgtcccaggtgcca
gcccaatgactggtttcaaagcactggctcctcttccagaggaccccagt
ttggttcgcagcacctacataatcagctcatagtcaccccatattatctt
cagtttgaggagatcaagagaaagtcctcttctcgtctctgtgagcacca
cacgcacacgcatatttggtgcacaggcatacatacaggtaaatattcac
agacaaaaataccattttaaaactgtttcagacatgctacttaattttag
taaaaataagtaaataaaataaaacttatctcaatagggttctagataat
agtattatattttaaggaaatgggaagggtagcataccagactgaaagtc
atttaaccattcctaagttattctccgataatataaaacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_133352907_133353883
seq2: B6Ng01-101C09.b_46_1020

seq1  GAATTCCATGAATTTAATTAGAGAACGCACTCTTGCACTAGGCTTCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAATTTAATTAGAGAACGCACTCTTGCACTAGGCTTCCTTA  50

seq1  CCTTGGTATTCGGTTTGGGATCTCCCTCTTCTGTACTGAGGGCTATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTATTCGGTTTGGGATCTCCCTCTTCTGTACTGAGGGCTATTCTG  100

seq1  TTTCTGCTTTCCACAGTGCATTCAGAGGTGTGCATACTTGTTCTCCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTTCCACAGTGCATTCAGAGGTGTGCATACTTGTTCTCCTGAT  150

seq1  CGCATTCTGGAAACGTCCACAGCTGATCTCCACCCTTCAGGCAGTGTCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTCTGGAAACGTCCACAGCTGATCTCCACCCTTCAGGCAGTGTCCG  200

seq1  AGAGACCCAGAGGACCCTTGTCCTAGCCATGCTCTTCTCCGTGCTTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCAGAGGACCCTTGTCCTAGCCATGCTCTTCTCCGTGCTTACTT  250

seq1  AAGCTCTTCAGTGAACTTTCCTGTTCTACACACACATCCCACACCTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTTCAGTGAACTTTCCTGTTCTACACACACATCCCACACCTCCTT  300

seq1  GTTTGCATTTCCATGCAATCCCCACTCCTCCCTTAGCCTCACCAGAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATTTCCATGCAATCCCCACTCCTCCCTTAGCCTCACCAGAGCCA  350

seq1  AGCCTGTCATCGAGTCTTCCATGTCGGAAGAAGACTTTCTTCTGTACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCATCGAGTCTTCCATGTCGGAAGAAGACTTTCTTCTGTACTGC  400

seq1  TGTTCCCCCAGTATTTTCCCCACCCTCCTTCATGTTCTGAGTTCTGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCCAGTATTTTCCCCACCCTCCTTCATGTTCTGAGTTCTGTGTA  450

seq1  ACCCATGCATGTTGCTATCTCACTTGTACCTGGAAAGCCACCAGGTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGCATGTTGCTATCTCACTTGTACCTGGAAAGCCACCAGGTAGAG  500

seq1  ATTTATTCTATTGCAGCCATGTTGTTCTTCCATTTCAACCAGAGGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCTATTGCAGCCATGTTGTTCTTCCATTTCAACCAGAGGCAGAG  550

seq1  TTTCCCAGGATAGCACACAACTCTTCGGGTTCCTTTTGTACACACAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGGATAGCACACAACTCTTCGGGTTCCTTTTGTACACACAAACA  600

seq1  TACGAATCCCACTTCAGAGGAGAGTGCACCAGGGTCCCATTGCTCTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAATCCCACTTCAGAGGAGAGTGCACCAGGGTCCCATTGCTCTGTGC  650

seq1  GTTGTAGTTTTTGTCAAGTCCCTCTGATGTTTTGTAGTTTTAGTGTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGTTTTTGTCAAGTCCCTCTGATGTTTTGTAGTTTTAGTGTAGAT  700

seq1  ACTTAATACTGATTAAAACCACTCAAGAAATTAAATAGGATAGGATGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATACTGATTAAAACCACTCAAGAAATTAAATAGGATAGGATGTTG  750

seq1  AGTGATGTGGCTACAATAAAGAACCAAGGTCTTAAGGTTAGGGTAGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTGGCTACAATAAAGAACCAAGGTCTTAAGGTTAGGGTAGGACT  800

seq1  GTTTTTCAGTTTCAGACCTGTGTTAATTATTTTGCTCATCACTCTGACCA  850
      ||||||||||||||||||||||||| |  |||||||||||||||||| ||
seq2  GTTTTTCAGTTTCAGACCTGTGTTATTATTTTTGCTCATCACTCTGA-CA  849

seq1  AACACTTGAGGGCAATAGGCAAGTTAAGGAAAGAGGGGATTACTCTATCA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACACTTGAGGGCAATAGGCAAGTTAAGGGAAGAGGGGATTACTCTATCA  899

seq1  TAGGGAAGGTATAATACTGGATGACTCAAGGTGGTAGAAGTGTATTGGCT  950
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  TAGGGAAGGTATAATACTGGATGACTCAA-GTGGTAGAAGTGTATTTGCT  948

seq1  GCCATTTGGTCACCTCTTAGGAGACAA  977
      |||||||||||||||||||||||||||
seq2  GCCATTTGGTCACCTCTTAGGAGACAA  975

seq1: chr2_133480206_133481318
seq2: B6Ng01-101C09.g_71_1162 (reverse)

seq1  AATGTTTTTATTATTATCTGATGAAATAACTTTAGGAATGTGTTTAAATG  50
      ||||||||   ||||||| ||   |||||| |||||||  || |||||||
seq2  AATGTTTT--ATATTATCGGA--GAATAAC-TTAGGAA--TGGTTAAATG  43

seq1  ACTCTTCAGTCTGGTATTTGCTTACCCTTCCCATTTTCCTTAAAATAGTA  100
      ||| ||||||||||||  ||| ||||||||||| |||||||||||||   
seq2  ACT-TTCAGTCTGGTA--TGC-TACCCTTCCCA-TTTCCTTAAAATA--T  86

seq1  AATACTATTTATCTAGAACCCTTATTGAGATATAGTTTTATTTTTATTTA  150
      ||||||| ||||||||||||| |||||||||| ||||||| |||||||||
seq2  AATACTA-TTATCTAGAACCC-TATTGAGATA-AGTTTTA-TTTTATTTA  132

seq1  CTTATTTTTACTAAAATTTAAGTAGCATTGTCTGAAACAGTTTTTAAAAT  200
      |||||||||||||||| |||||||||| |||||||||||| |||||||||
seq2  CTTATTTTTACTAAAA-TTAAGTAGCA-TGTCTGAAACAG-TTTTAAAAT  179

seq1  GGTATTTTTGTCTGTGAATATTTTACCTGTATGTATGCCTGTGCACCAAA  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGTATTTTTGTCTGTGAATA-TTTACCTGTATGTATGCCTGTGCACCAAA  228

seq1  TATGCGTGTGCGTGTGGTGCTCACAGAGACGAGAAGAGGACTTTCTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGTGTGCGTGTGGTGCTCACAGAGACGAGAAGAGGACTTTCTCTTG  278

seq1  ATCTCCTCAAACTGAAGATAATAT-GGGTGACTATGAGCTGATTATGTAG  349
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCTCCTCAAACTGAAGATAATATGGGGTGACTATGAGCTGATTATGTAG  328

seq1  GTGCTGCGAACCAAACTGGGGTCCTCTGGAAGAGGAGCCAGTGCTTTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCGAACCAAACTGGGGTCCTCTGGAAGAGGAGCCAGTGCTTTGAA  378

seq1  ACCAGTCATTGGGCTGGCACCTGGGACAAAAAAGCAAAGATGTGCTTGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCATTGGGCTGGCACCTGGGACAAAAAAGCAAAGATGTGCTTGAT  428

seq1  TGGTCACTAGATCTCAGAGTGACATCATTTTCTTCTTTAGGAACACCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTAGATCTCAGAGTGACATCATTTTCTTCTTTAGGAACACCTTT  478

seq1  CAGGTTGTACTTTAAATGGACACATGAGGAACTTTACTTGGTCGTTTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTACTTTAAATGGACACATGAGGAACTTTACTTGGTCGTTTTAT  528

seq1  GATCTTAGTGGACCTGGGGCTAGCCATTAACTTGAAGTTTAAAGATAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGTGGACCTGGGGCTAGCCATTAACTTGAAGTTTAAAGATAGTG  578

seq1  AGGGAGAGTGAAAAGAAGAAGGGGAAGAAAAAAAAAACAGGGAAAGCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGTGAAAAGAAGAAGGGGAAGAAAAAAAAAACAGGGAAAGCTGA  628

seq1  AGGCAAGAAACAAAGTGAAAAGGAGGGGGAGAGAAGAAAAGAGAAAGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGAAACAAAGTGAAAAGGAGGGGGAGAGAAGAAAAGAGAAAGTAA  678

seq1  AATAAAAATGGATAGGGAAAAGGCAGAAAAGATAAGAAAATTAAGTGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATGGATAGGGAAAAGGCAGAAAAGATAAGAAAATTAAGTGCTT  728

seq1  GGAGTTGGAGCAATACTACCTGCATGACCCAGCTCTGTCTTTCAAAACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGAGCAATACTACCTGCATGACCCAGCTCTGTCTTTCAAAACAA  778

seq1  GTGATCGTTGGTTCTGGAGTCTGTCTGCCAGTCCCAGATAATAATACTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCGTTGGTTCTGGAGTCTGTCTGCCAGTCCCAGATAATAATACTGT  828

seq1  GACTAGTGTTATTCGGCACAGTACAAAGTGGGGAGGTTTTCCAGCAGCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTGTTATTCGGCACAGTACAAAGTGGGGAGGTTTTCCAGCAGCTG  878

seq1  CCTCCTGAATGTGAACTTTCACATTTTGACTTAAAGCCTTGAGTTTCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGAATGTGAACTTTCACATTTTGACTTAAAGCCTTGAGTTTCCCT  928

seq1  CGGTTCCATCTGAGGGTTCTGACTTGATGTGTATCCACTGTAAGCTCTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCCATCTGAGGGTTCTGACTTGATGTGTATCCACTGTAAGCTCTAC  978

seq1  TGTAATTGTATTCTGTCCTGATTTTAAAAAAAAAAAAAACCTTTGGTAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTGTATTCTGTCCTGATTTTAAAAAAAAAAAAAACCTTTGGTAAT  1028

seq1  TTCACCATTTTAATGCTTGAAAGCTCAACTCTCTGAGTGCTTGAAGGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCATTTTAATGCTTGAAAGCTCAACTCTCTGAGTGCTTGAAGGAAA  1078

seq1  TGCCTAAAGAATTC  1113
      ||||||||||||||
seq2  TGCCTAAAGAATTC  1092