BAC Information

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BAC

Clone NameB6Ng01-101E08
Chromosome2 (Build37)
Map Location 28,815,167 - 28,956,577
singlet/doubletdoublet
Overlap gene1700101E01Rik, LOC100039666, Ttf1
Upstream geneCol5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452
Downstream geneSetx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101E08.bB6Ng01-101E08.g
ACCDH910511DH910512
length8341,168
definitionDH910511|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E08, 5' end.DH910512|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,815,167 - 28,816,000)(28,955,374 - 28,956,577)
sequence
gaattctgatgctggcttgccactttctgaatgtctactctgtgctaagg
caggggactcgtgacattattcaccaaaacatactacctcagcctctcaa
aaggaaggacacacccaggaagctcgtccagccctcacagctgccaccct
tcatccttgaggtgggacctgcgttccaggaaggatgctctgccttctgc
cgcagggccctgagcccctctgaagggctgctttcctataggaggaaagg
tcctccatgtctctgaaaacgcagggcacagaggagattctgaacacata
gacctttaaaaatctccatctgaccatattctgtctacacctctttccca
ggatggcccatcatctcctcaaacccaatatgaaaatatgcaggcctgtt
tctttgagtcttcatttctttgggaaaattcctgagtcaggggaagtcct
cattttaaatattttatctgatatttcttctctctctctctctctctctc
tctctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtttgtgtg
tgtgctttaatcctctggagctggaatactgggtcattgtgagccaacag
acacaggtgctgagaactgaactccagtcctctggaaaagcagtgtgtgt
cttagctcctgagccatctctccagctcctctgttcatctcttgcatcat
acaggtctccactatgaacccaggatagatatcgtctggttcaacatgac
tgtctgctttagtgggagggacagagaggctctgagtgttgggaccttgc
tcctgattaaagtgaggggatcccctggggagct
gaattcttttgcaaaagtgaaagcaaaagtatggggctgggccacaggat
gctgattcataggataaccgaagggaacctggaataaacgactggattga
tatgtaaaataaaagactgggcttgtggtctacaagttagccagggaatt
ttgcaggagagaactgcttggagaactgagaacagagagagctgtctgga
gatctctagagaaagcagatgaacagagagaaggcaggctgggaccctgt
ctccagcagagcctaggccaccagcttggagccaggatttgacttcgagg
cagttgtttgtttctgctgcgcccaggcatcccttctttcagaaactgtt
tacccgtggcagttcatatgtatgggggtgccggaggccagccccaggga
tggccaggtcccagaggggaggtaaagagttggtgaaggaggattgaatc
agcaaagctgaagactcttgcagctctgactgactagcaatcaggttgct
tctttatttatatagatctcataaaataatgacagaggcatgatttccca
agaaatacaaatcatatcattttttccctgcacatgtgtttgattttttc
attgcaggtctgaagttgcagattcagttacaattaccaagttcagaaag
aacaggtgtgatttttattatcagacctataacccaatttcaaggaatct
gagtttttctgccaaagcatgcatacttaatatactgcaccctattctta
gtctggcagcatttataatttcaaagcactagacaaatgtgtgtgatttt
aaaaagcacatgtcctcctagcctggtctcttgcccagtgctgcggcccc
tcacgacttagctcctacatcctgcctgatcctctggctgaggctgctag
gcccccaacaccgtccctcctgagatgctggagcctgcccacctgagtca
cacagatgaacatcagacgacttatattttaaactaggcgattacacacc
actggtgcggaactatcgtcttaactaatcagctgctctgcctctggatg
cctggattaaggctggtgccaccttgctggcacctacagctctctttaca
gattcttctgagctacagtggggtctggttcaggctaacccttctgactt
ggtctccgcctctctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_28815167_28816000
seq2: B6Ng01-101E08.b_50_883

seq1  GAATTCTGATGCTGGCTTGCCACTTTCTGAATGTCTACTCTGTGCTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGCTGGCTTGCCACTTTCTGAATGTCTACTCTGTGCTAAGG  50

seq1  CAGGGGACTCGTGACATTATTCACCAAAACATACTACCTCAGCCTCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACTCGTGACATTATTCACCAAAACATACTACCTCAGCCTCTCAA  100

seq1  AAGGAAGGACACACCCAGGAAGCTCGTCCAGCCCTCACAGCTGCCACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGACACACCCAGGAAGCTCGTCCAGCCCTCACAGCTGCCACCCT  150

seq1  TCATCCTTGAGGTGGGACCTGCGTTCCAGGAAGGATGCTCTGCCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTGAGGTGGGACCTGCGTTCCAGGAAGGATGCTCTGCCTTCTGC  200

seq1  CGCAGGGCCCTGAGCCCCTCTGAAGGGCTGCTTTCCTATAGGAGGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGGCCCTGAGCCCCTCTGAAGGGCTGCTTTCCTATAGGAGGAAAGG  250

seq1  TCCTCCATGTCTCTGAAAACGCAGGGCACAGAGGAGATTCTGAACACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATGTCTCTGAAAACGCAGGGCACAGAGGAGATTCTGAACACATA  300

seq1  GACCTTTAAAAATCTCCATCTGACCATATTCTGTCTACACCTCTTTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTAAAAATCTCCATCTGACCATATTCTGTCTACACCTCTTTCCCA  350

seq1  GGATGGCCCATCATCTCCTCAAACCCAATATGAAAATATGCAGGCCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCCCATCATCTCCTCAAACCCAATATGAAAATATGCAGGCCTGTT  400

seq1  TCTTTGAGTCTTCATTTCTTTGGGAAAATTCCTGAGTCAGGGGAAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGTCTTCATTTCTTTGGGAAAATTCCTGAGTCAGGGGAAGTCCT  450

seq1  CATTTTAAATATTTTATCTGATATTTCTTCTCTCTCTCTCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAATATTTTATCTGATATTTCTTCTCTCTCTCTCTCTCTCTCTC  500

seq1  TCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTTTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTTTGTGTG  550

seq1  TGTGCTTTAATCCTCTGGAGCTGGAATACTGGGTCATTGTGAGCCAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTAATCCTCTGGAGCTGGAATACTGGGTCATTGTGAGCCAACAG  600

seq1  ACACAGGTGCTGAGAACTGAACTCCAGTCCTCTGGAAAAGCAGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTGCTGAGAACTGAACTCCAGTCCTCTGGAAAAGCAGTGTGTGT  650

seq1  CTTAGCTCCTGAGCCATCTCTCCAGCCCCTCTGTTCATCTCTTGCATCAT  700
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTAGCTCCTGAGCCATCTCTCCAGCTCCTCTGTTCATCTCTTGCATCAT  700

seq1  ACAGGTCTCCACTATGAACCCAGGATAGATATCGTCTGGTTCAACATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTCCACTATGAACCCAGGATAGATATCGTCTGGTTCAACATGAC  750

seq1  TGTCTGCTTTAGTGGGAGGGACAGAGAGGCTCTGAGTGGTGGGACCTAGC  800
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  TGTCTGCTTTAGTGGGAGGGACAGAGAGGCTCTGAGTGTTGGGACCTTGC  800

seq1  TCCTGATTAAAGTGAGGTGATCCCCTGTGGAGCT  834
      ||||||||||||||||| ||||||||| ||||||
seq2  TCCTGATTAAAGTGAGGGGATCCCCTGGGGAGCT  834

seq1: chr2_28955374_28956577
seq2: B6Ng01-101E08.g_68_1235 (reverse)

seq1  AGGA-AGAGGCGGAGACAAGATCTAGAAAGGGGCTTTTGGGCCTGGAGCA  49
      |||| |||||||||||| |  || |||| ||      |  ||||| |   
seq2  AGGAGAGAGGCGGAGACCAAGTC-AGAAGGG------TTAGCCTGAA--C  41

seq1  CAGACACCA-TGTAGGCTACCGGAAGAATTCTGATATAAGAGAGCTGATG  98
      ||||| ||| |||| |||  | |||||| |||| || |||||||||| | 
seq2  CAGACCCCACTGTA-GCT--CAGAAGAA-TCTG-TA-AAGAGAGCTG-TA  84

seq1  AGTGCCCAGCATGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCAG  148
       ||| |||||| ||||||||  ||| |||||||  ||| ||  |||||||
seq2  GGTG-CCAGCAAGGTGGCACCAGCC-TTAATCCAGGCA-TCCAGAGGCAG  131

seq1  AGGCAGGCTGATGAGTTTAGGACGATAGGTTCCGCACCCAGTGGTTGTGT  198
      | ||| |||||| || ||| ||||||| |||||||| ||||||| |||||
seq2  A-GCA-GCTGATTAG-TTAAGACGATA-GTTCCGCA-CCAGTGG-TGTGT  175

seq1  TATCTGCCTAGTTTTAAAATATTAAGTCTGTCTGATGTTTTCCATCTGTG  248
       ||| |||||| ||||||||| |||||| ||||||||||   ||||||||
seq2  AATC-GCCTAG-TTTAAAATA-TAAGTC-GTCTGATGTT---CATCTGTG  218

seq1  TTGACTCAGGTGGGCAGGCTCCAGGCATTCTCAGGAGGGACGGTTGTTGG  298
       |||||||||||||||||||||| ||| ||||||||||||||| |||| |
seq2  -TGACTCAGGTGGGCAGGCTCCA-GCA-TCTCAGGAGGGACGG-TGTT-G  263

seq1  GGGGCCTAGCAGCCTCAGCCAGAGGATCAGGCAGGATGTAGGAGCTAAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTAGCAGCCTCAGCCAGAGGATCAGGCAGGATGTAGGAGCTAAGT  313

seq1  CGTGAGGGGCCGCAGCACTGGGCAAGGAGACCAGGCTAGGAGGACATGTG  398
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CGTGAGGGGCCGCAGCACTGGGCAA-GAGACCAGGCTAGGAGGACATGTG  362

seq1  CTTTTTAAAATCACACACATTTGTCTAGTGCTTTGAAATTATAAATGCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAATCACACACATTTGTCTAGTGCTTTGAAATTATAAATGCTG  412

seq1  CCAGACTAAGAATAGGGTGCAGTATATTAAGTATGCATGCTTTGGCAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTAAGAATAGGGTGCAGTATATTAAGTATGCATGCTTTGGCAGAA  462

seq1  AAACTCAGATTCCTTGAAATTGGGTTATAGGTCTGATAATAAAAATCACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGATTCCTTGAAATTGGGTTATAGGTCTGATAATAAAAATCACA  512

seq1  CCTGTTCTTTCTGAACTTGGTAATTGTAACTGAATCTGCAACTTCAGACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTTCTGAACTTGGTAATTGTAACTGAATCTGCAACTTCAGACC  562

seq1  TGCAATGAAAAAATCAAACACATGTGCAGGGAAAAAATGATATGATTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAAAAAATCAAACACATGTGCAGGGAAAAAATGATATGATTTGT  612

seq1  ATTTCTTGGGAAATCATGCCTCTGTCATTATTTTATGAGATCTATATAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGGGAAATCATGCCTCTGTCATTATTTTATGAGATCTATATAAA  662

seq1  TAAAGAAGCAACCTGATTGCTAGTCAGTCAGAGCTGCAAGAGTCTTCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGCAACCTGATTGCTAGTCAGTCAGAGCTGCAAGAGTCTTCAGC  712

seq1  TTTGCTGATTCAATCCTCCTTCACCAACTCTTTACCTCCCCTCTGGGACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGATTCAATCCTCCTTCACCAACTCTTTACCTCCCCTCTGGGACC  762

seq1  TGGCCATCCCTGGGGCTGGCCTCCGGCACCCCCATACATATGAACTGCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCCCTGGGGCTGGCCTCCGGCACCCCCATACATATGAACTGCCA  812

seq1  CGGGTAAACAGTTTCTGAAAGAAGGGATGCCTGGGCGCAGCAGAAACAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTAAACAGTTTCTGAAAGAAGGGATGCCTGGGCGCAGCAGAAACAAA  862

seq1  CAACTGCCTCGAAGTCAAATCCTGGCTCCAAGCTGGTGGCCTAGGCTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCTCGAAGTCAAATCCTGGCTCCAAGCTGGTGGCCTAGGCTCTG  912

seq1  CTGGAGACAGGGTCCCAGCCTGCCTTCTCTCTGTTCATCTGCTTTCTCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACAGGGTCCCAGCCTGCCTTCTCTCTGTTCATCTGCTTTCTCTA  962

seq1  GAGATCTCCAGACAGCTCTCTCTGTTCTCAGTTCTCCAAGCAGTTCTCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTCCAGACAGCTCTCTCTGTTCTCAGTTCTCCAAGCAGTTCTCTC  1012

seq1  CTGCAAAATTCCCTGGCTAACTTGTAGACCACAAGCCCAGTCTTTTATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAATTCCCTGGCTAACTTGTAGACCACAAGCCCAGTCTTTTATTT  1062

seq1  TACATATCAATCCAGTCGTTTATTCCAGGTTCCCTTCGGTTATCCTATGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCAATCCAGTCGTTTATTCCAGGTTCCCTTCGGTTATCCTATGA  1112

seq1  ATCAGCATCCTGTGGCCCAGCCCCATACTTTTGCTTTCACTTTTGCAAAA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATCCTGTGGCCCAGCCCCATACTTTTGCTTTCACTTTTGCAAAA  1162

seq1  GAATTC  1204
      ||||||
seq2  GAATTC  1168