BAC Information

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BAC

Clone NameB6Ng01-101H04
Chromosome2 (Build37)
Map Location 172,287,052 - 172,414,692
singlet/doubletdoublet
Overlap gene2410001C21Rik, 1700029J11Rik, LOC629957, Tcfap2c
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, A330041C17Rik
Downstream geneLOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101H04.bB6Ng01-101H04.g
ACCDH910629DH910630
length1,072849
definitionDH910629|Mus musculus domesticus DNA, BAC clone: B6Ng01-101H04, 5' end.DH910630|Mus musculus domesticus DNA, BAC clone: B6Ng01-101H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,287,052 - 172,288,119)(172,413,841 - 172,414,692)
sequence
gaattccatccccacaaatttctccctcacagtcttgtcttgtatgacat
ggttttgtgtcaagcttttcaatgataaaatccactggtggcctctccgc
tggtgttaaaactcagaagcagggaggtctggggcctctggagagaaact
gcagctgaggtcccagcagggagatggctctgcactaagggtcccgcctc
ctgcacccttcaccgtcctcaggagggttagttacgccagcgagtgcctc
tgagcccctggggccttccttcccacctcactcagttccagaaaaatccc
ttttcatcctctctccaaggaagatccctcccttcttcactgagggggtc
tctacccaagtgtgcctggtcccagacttcccaggggccacctgcttaga
ggttgttcctccccatctccctgcctcatggtggctgagatagccctctc
cctcagtgggaacctcctttccttcaggtcatttctctggaggccgccaa
gctcggggctggcagataccttcagtcagcagcactcctcagggcagccc
tgagcaaggagcaaaccactcgtcaggctcgcacgctgacctctgacctg
tgtgcccagaggtgccagagaccttgggccctcttaaaagagggtcctgt
ttatcagctttcttacagaggatagcatggcacctcttcccaggtgtgac
agccagaatcatctgcagactgtgtggagtccctggggaacagagcagcc
accttttgagggtctcttctctggagttacaccacccttacagctgagga
ggctgcccttggaggcaggagcagaagcctcagttcctgtgtaggagctt
tcttctccgacatttgtctctctttctggcagagactagcattgagaaac
aacttcggataatcgttgaagaagatcccaggctatcagttgcctaggac
ctaattctcagggcgaaaggtacttagtgtttagtggcaggtgcctctgt
aagggggggcttgcttgctttcaatctggtgaatatgggcatgttgtcag
ctgcaacctgacatgaactgac
gaattctgtgacttccaggttgtggatctttggcttgcttcactttccct
ggtaaaaaggctctttgttgttctcaggaagtgtcacaggaacaatgggc
agttaacttcattcctttctttggctggactggggtgggggccagagcgg
ggcaaagaggggaggttcccctccagatttctagtggggtggaggagaga
gtcatcagtcaaagttccctgggaatgcaagctcctgagagcctaaggtg
gccttagttgtgccctagatcccagacctgaggtgccaagtggattcatt
acagccgactctggttctgagtctagtgtccactcaactctctcccactt
tgctgttccccttaatttcttgtctgttaatctgctctgtgcccaagtgc
tctcacacagttcatggagaacaaggagtgcctgagcctgtaagatccct
ggctcctggattcacaaggaggcacatgacctacctgagccaatgactca
caggtcaatagctctgggccctgacagtcccttgtgctggtgtcaggagg
ccagggtggcctcgtagctgctggcacattgtcaacagcttgaaaaaggt
gaagagagagaaacctggcatcaccgtcatcccagcacccctaaagccag
actccagccctcctgcatcattgccttctctcaatcattcatttcattga
tcttttatctttatataagctctatgggggcctgagaggtggctcattaa
gtcacataagcccacaatctgaaggtgagccctgaaatccacataaattt
gaagaaagaaccagttcctcaaagttgtctctgatctgggacatgcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172287052_172288119
seq2: B6Ng01-101H04.b_49_1120

seq1  GAATTCCATCCCCACAAATTTCTCCCTCACAGTCTTGTCTTGTATGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCCACAAATTTCTCCCTCACAGTCTTGTCTTGTATGACAT  50

seq1  GGTTTTGTGTCAAGCTTTTCAATGATAAAATCCACTGGTGGCCTCTCCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTGTCAAGCTTTTCAATGATAAAATCCACTGGTGGCCTCTCCGC  100

seq1  TGGTGTTAAAACTCAGAAGCAGGGAGGTCTGGGGCCTCTGGAGAGAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTAAAACTCAGAAGCAGGGAGGTCTGGGGCCTCTGGAGAGAAACT  150

seq1  GCAGCTGAGGTCCCAGCAGGGAGATGGCTCTGCACTAAGGGTCCCGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGAGGTCCCAGCAGGGAGATGGCTCTGCACTAAGGGTCCCGCCTC  200

seq1  CTGCACCCTTCACCGTCCTCAGGAGGGTTAGTTACGCCAGCGAGTGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCCTTCACCGTCCTCAGGAGGGTTAGTTACGCCAGCGAGTGCCTC  250

seq1  TGAGCCCCTGGGGCCTTCCTTCCCACCTCACTCAGTTCCAGAAAAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCTGGGGCCTTCCTTCCCACCTCACTCAGTTCCAGAAAAATCCC  300

seq1  TTTTCATCCTCTCTCCAAGGAAGATCCCTCCCTTCTTCACTGAGGGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCCTCTCTCCAAGGAAGATCCCTCCCTTCTTCACTGAGGGGGTC  350

seq1  TCTACCCAAGTGTGCCTGGTCCCAGACTTCCCAGGGGCCACCTGCTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCAAGTGTGCCTGGTCCCAGACTTCCCAGGGGCCACCTGCTTAGA  400

seq1  GGTTGTTCCTCCCCATCTCCCTGCCTCATGGTGGCTGAGATAGCCCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTCCTCCCCATCTCCCTGCCTCATGGTGGCTGAGATAGCCCTCTC  450

seq1  CCTCAGTGGGAACCTCCTTTCCTTCAGGTCATTTCTCTGGAGGCCGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGGGAACCTCCTTTCCTTCAGGTCATTTCTCTGGAGGCCGCCAA  500

seq1  GCTCGGGGCTGGCAGATACCTTCAGTCAGCAGCACTCCTCAGGGCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGGGCTGGCAGATACCTTCAGTCAGCAGCACTCCTCAGGGCAGCCC  550

seq1  TGAGCAAGGAGCAAACCACTCGTCAGGCTCGCACGCTGACCTCTGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGGAGCAAACCACTCGTCAGGCTCGCACGCTGACCTCTGACCTG  600

seq1  TGTGCCCAGAGGTGCCAGAGACCTTGGGCCCTCTTAAAAGAGGGTCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAGAGGTGCCAGAGACCTTGGGCCCTCTTAAAAGAGGGTCCTGT  650

seq1  TTATCAGCTTTCTTACAGAGGATAGCATGGCACCTCTTCCCAGGTGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGCTTTCTTACAGAGGATAGCATGGCACCTCTTCCCAGGTGTGAC  700

seq1  AGCCAGAATCATCTGCAGACTGTGTGGAGTCCCTGGGGAACAGAGCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAATCATCTGCAGACTGTGTGGAGTCCCTGGGGAACAGAGCAGCC  750

seq1  ACC-TTTGAGGGTCTCTTCTCTGGAGTTACACCACCCTTACAGCTGAGGA  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTGAGGGTCTCTTCTCTGGAGTTACACCACCCTTACAGCTGAGGA  800

seq1  GGCTGCCC-TGGAGGCAGGAGCAGAAGCCTCAGTT-CTGTGTAGGAGCCT  847
      |||||||| |||||||||||||||||||||||||| |||||||||||| |
seq2  GGCTGCCCTTGGAGGCAGGAGCAGAAGCCTCAGTTCCTGTGTAGGAGCTT  850

seq1  TGCTCTCCGACA-TTGTCTCTCTTCCT-GCAGAGACTAGCATTGAG-AAC  894
      |  ||||||||| ||||||||||| || |||||||||||||||||| |||
seq2  TCTTCTCCGACATTTGTCTCTCTTTCTGGCAGAGACTAGCATTGAGAAAC  900

seq1  AAC-TCGGATAA-CG-TGAAGAAGATCCCAGGCTATCAG-TGCCTAGGAC  940
      ||| |||||||| || ||||||||||||||||||||||| ||||||||||
seq2  AACTTCGGATAATCGTTGAAGAAGATCCCAGGCTATCAGTTGCCTAGGAC  950

seq1  CTAATTCTCAGGGGCGAAGGGACTTAGTGGTTTGGTGGCAGGTGGCCTCT  990
      |||||||||||||   |||| ||||||| |||| ||||||||| ||||||
seq2  CTAATTCTCAGGGCGAAAGGTACTTAGT-GTTTAGTGGCAGGT-GCCTCT  998

seq1  GTAAGGTGGGGGCTTGCTTGCTTACAATTCTGTGAATATGGGCATGTGTG  1040
      |||||| |||||||||||||||| ||||   ||||||||||||||||   
seq2  GTAAGG-GGGGGCTTGCTTGCTTTCAATCTGGTGAATATGGGCATGTTGT  1047

seq1  CAGCTGGCAGAGCTGAGCATGAACTGAC  1068
      ||||| ||| | |||| |||||||||||
seq2  CAGCT-GCA-ACCTGA-CATGAACTGAC  1072

seq1: chr2_172413841_172414692
seq2: B6Ng01-101H04.g_69_917 (reverse)

seq1  CATGCATGTCACAGATCAGAGACAACTTTGAGGAACTGGTTCTTTCCTTC  50
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  CATGCATGTCCCAGATCAGAGACAACTTTGAGGAACTGGTTCTTT-CTTC  49

seq1  AAACTTTATGTGGATTTCAGGGCTCAACCTCAGATTGTGGGCTTATGTGA  100
      ||| |||||||||||||||||||||| | |||||||||||||||||||||
seq2  AAA-TTTATGTGGATTTCAGGGCTCACCTTCAGATTGTGGGCTTATGTGA  98

seq1  CTTAACTGAGCCACCTCTCAGGCCCCCATAGAGCTTATATAAAGATAAAA  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAA-TGAGCCACCTCTCAGGCCCCCATAGAGCTTATATAAAGATAAAA  147

seq1  GATCAATGAAATGAATGATTGAGAGAAGGCAATGATGCAGGAGGGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATGAAATGAATGATTGAGAGAAGGCAATGATGCAGGAGGGCTGGA  197

seq1  GTCTGGCTTTAGGGGTGCTGGGATGACGGTGATGCCAGGTTTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCTTTAGGGGTGCTGGGATGACGGTGATGCCAGGTTTCTCTCTCT  247

seq1  TCACCTTTTTCAAGCTGTTGACAATGTGCCAGCAGCTACGAGGCCACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTTTCAAGCTGTTGACAATGTGCCAGCAGCTACGAGGCCACCCT  297

seq1  GGCCTCCTGACACCAGCACAAGGGACTGTCAGGGCCCAGAGCTATTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTGACACCAGCACAAGGGACTGTCAGGGCCCAGAGCTATTGACC  347

seq1  TGTGAGTCATTGGCTCAGGTAGGTCATGTGCCTCCTTGTGAATCCAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCATTGGCTCAGGTAGGTCATGTGCCTCCTTGTGAATCCAGGAG  397

seq1  CCAGGGATCTTACAGGCTCAGGCACTCCTTGTTCTCCATGAACTGTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATCTTACAGGCTCAGGCACTCCTTGTTCTCCATGAACTGTGTGA  447

seq1  GAGCACTTGGGCACAGAGCAGATTAACAGACAAGAAATTAAGGGGAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTGGGCACAGAGCAGATTAACAGACAAGAAATTAAGGGGAACAG  497

seq1  CAAAGTGGGAGAGAGTTGAGTGGACACTAGACTCAGAACCAGAGTCGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGGAGAGAGTTGAGTGGACACTAGACTCAGAACCAGAGTCGGCT  547

seq1  GTAATGAATCCACTTGGCACCTCAGGTCTGGGATCTAGGGCACAACTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAATCCACTTGGCACCTCAGGTCTGGGATCTAGGGCACAACTAAG  597

seq1  GCCACCTTAGGCTCTCAGGAGCTTGCATTCCCAGGGAACTTTGACTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTTAGGCTCTCAGGAGCTTGCATTCCCAGGGAACTTTGACTGATG  647

seq1  ACTCTCTCCTCCACCCCACTAGAAATCTGGAGGGGAACCTCCCCTCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCCTCCACCCCACTAGAAATCTGGAGGGGAACCTCCCCTCTTTG  697

seq1  CCCCGCTCTGGCCCCCACCCCAGTCCAGCCAAAGAAAGGAATGAAGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCTCTGGCCCCCACCCCAGTCCAGCCAAAGAAAGGAATGAAGTTAA  747

seq1  CTGCCCATTGTTCCTGTGACACTTCCTGAGAACAACAAAGAGCCTTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATTGTTCCTGTGACACTTCCTGAGAACAACAAAGAGCCTTTTTA  797

seq1  CCAGGGAAAGTGAAGCAAGCCAAAGATCCACAACCTGGAAGTCACAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAAAGTGAAGCAAGCCAAAGATCCACAACCTGGAAGTCACAGAAT  847

seq1  TC  852
      ||
seq2  TC  849