BAC Information

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BAC

Clone NameB6Ng01-101M09
Chromosome2 (Build37)
Map Location 72,519,301 - 72,656,108
singlet/doubletdoublet
Overlap geneLOC100039928, 6430710C18Rik
Upstream geneGm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101M09.bB6Ng01-101M09.g
ACCDH910853DH910854
length6841,122
definitionDH910853|Mus musculus domesticus DNA, BAC clone: B6Ng01-101M09, 5' end.DH910854|Mus musculus domesticus DNA, BAC clone: B6Ng01-101M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,655,425 - 72,656,108)(72,519,301 - 72,520,432)
sequence
gaattcctctttcttgtcatttttgggcagctgtttctgtttttttcagg
aacttatttgcctcagttcttcaagcatatttatagttgctcttttgagt
tcttagccttggattttcatctaacatactctcagtaaatgccattcatt
taggttagtaaatcctacaggagttatggtactttggtttttcatgtttc
ttatggtacagtgttgggatttcattgtttcagtttttttttttttaatc
agctatactatttcagttgaagtatttacaatggtcaagtggggcttaga
tgtggtacagtagaggtgagtagttcagaaaataactcttcagtccagaa
agtcagggcaactgatgaagactgtgtgttagtcactctgtagatcattc
tgtaggtcggtctgtagatgtttctgtaggtcattctgtagatggttctg
taggtcgttctgtagattgctctgtagattgttctgtaggttgttctgtg
tgagaacaaccacagctactggatattcccagaatgcaaatgctgcacta
gcctactaacaacagtggctccttcacttcaatcactgttggaagatagt
taaatacgcatagtacagagcatactcagattttagtcagtaagatcatg
ggtgggaggagacaggtgggggtgtatgtggata
gaattccagagaataaagttgccaagtcttgttcttcaccctgaagttac
tgtcgttgagacaacatttcattcttatctcagataagcctggaattctt
atagttcatgcaatgtagccccaaacttccttaaggcaatcctcttgtct
cagcctttcaaatatttcaagtatgggattggagtcatgaattaccatac
ttggcttcatatttaaatttttgacaaatattgacaatcttctagatgcc
acccctttcctttttatatgtctccctggtggcagcatgctggatgtctg
cctgtcactctctgatcgttaccagtctgaaagtgagagtggttgaacat
tgttttcaaacacagtcctcactgttctttaaggttggtggcctttttca
tatttaaccctctgttgttttgttgttgttgttgttattgttgttgtttt
taaaccagagatccccagtaccatactaggcagtctgtgagtgattagag
ctgcctgctgattgattttacttaaagtctcattagcttgggtgaaaagg
ttttcactttggtaattttattcgaaatgttgaacagaacaaatttgatc
gctgcaaggatccgtaacactcgtgcaagcttatctgctgtgttggggaa
tgagagtttattgcatcataaaaatgctaccttacgcttctattgggtga
gcattgaaatttttatgagttcttcctaactaaagttatcagtaaataat
actcaaatcttgactggactcatcctagattgatgtgacttatttgataa
atcaacaccataaagagactcacagccgagtgccccgacagtctgttcaa
ggatggagggcagattctaactctgcattactaagtcagatttcaaggat
gaagacttctgagagtagccgtttcaggagagggaacagcagtgagctct
tcttcctttagtgtggctctcacttcatctctcactgggaaccagagctt
gaagcttcatcattgggagggttttctggtggtctccactcacacatcag
agtttcgttcctttccacgaggctaggatccttcgaagaatacggctgca
ttgagcccacacaccatggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72655425_72656108
seq2: B6Ng01-101M09.b_47_730 (reverse)

seq1  TATCCACATACACCCCCACCTGTCTCCTCCCACCCATGATCTTACTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACATACACCCCCACCTGTCTCCTCCCACCCATGATCTTACTGACT  50

seq1  AAAATCTGAGTATGCTCTGTACTATGCGTATTTAACTATCTTCCAACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGAGTATGCTCTGTACTATGCGTATTTAACTATCTTCCAACAGT  100

seq1  GATTGAAGTGAAGGAGCCACTGTTGTTAGTAGGCTAGTGCAGCATTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGTGAAGGAGCCACTGTTGTTAGTAGGCTAGTGCAGCATTTGCA  150

seq1  TTCTGGGAATATCCAGTAGCTGTGGTTGTTCTCACACAGAACAACCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAATATCCAGTAGCTGTGGTTGTTCTCACACAGAACAACCTACA  200

seq1  GAACAATCTACAGAGCAATCTACAGAACGACCTACAGAACCATCTACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATCTACAGAGCAATCTACAGAACGACCTACAGAACCATCTACAGA  250

seq1  ATGACCTACAGAAACATCTACAGACCGACCTACAGAATGATCTACAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTACAGAAACATCTACAGACCGACCTACAGAATGATCTACAGAGT  300

seq1  GACTAACACACAGTCTTCATCAGTTGCCCTGACTTTCTGGACTGAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACACACAGTCTTCATCAGTTGCCCTGACTTTCTGGACTGAAGAGT  350

seq1  TATTTTCTGAACTACTCACCTCTACTGTACCACATCTAAGCCCCACTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGAACTACTCACCTCTACTGTACCACATCTAAGCCCCACTTGA  400

seq1  CCATTGTAAATACTTCAACTGAAATAGTATAGCTGATTAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTAAATACTTCAACTGAAATAGTATAGCTGATTAAAAAAAAAAAA  450

seq1  ACTGAAACAATGAAATCCCAACACTGTACCATAAGAAACATGAAAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACAATGAAATCCCAACACTGTACCATAAGAAACATGAAAAACCA  500

seq1  AAGTACCATAACTCCTGTAGGATTTACTAACCTAAATGAATGGCATTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCATAACTCCTGTAGGATTTACTAACCTAAATGAATGGCATTTAC  550

seq1  TGAGAGTATGTTAGATGAAAATCCAAGGCTAAGAACTCAAAAGAGCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTATGTTAGATGAAAATCCAAGGCTAAGAACTCAAAAGAGCAACT  600

seq1  ATAAATATGCTTGAAGAACTGAGGCAAATAAGTTCCTGAAAAAAACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATGCTTGAAGAACTGAGGCAAATAAGTTCCTGAAAAAAACAGAA  650

seq1  ACAGCTGCCCAAAAATGACAAGAAAGAGGAATTC  684
      ||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCCCAAAAATGACAAGAAAGAGGAATTC  684

seq1: chr2_72519301_72520432
seq2: B6Ng01-101M09.g_72_1193

seq1  GAATTCCAGAGAATAAAGTTGCCAAGTCTTGTTCTTCACCCTGAAGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAATAAAGTTGCCAAGTCTTGTTCTTCACCCTGAAGTTAC  50

seq1  TGTCGTTGAGACAACATTTCATTCTTATCTCAGATAAGCCTGGAATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTTGAGACAACATTTCATTCTTATCTCAGATAAGCCTGGAATTCTT  100

seq1  ATAGTTCATGCAATGTAGCCCCAAACTTCCTTAAGGCAATCCTCTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCATGCAATGTAGCCCCAAACTTCCTTAAGGCAATCCTCTTGTCT  150

seq1  CAGCCTTTCAAATATTTCAAGTATGGGATTGGAGTCATGAATTACCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTCAAATATTTCAAGTATGGGATTGGAGTCATGAATTACCATAC  200

seq1  TTGGCTTCATATTTAAATTTTTGACAAATATTGACAATCTTCTAGATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCATATTTAAATTTTTGACAAATATTGACAATCTTCTAGATGCC  250

seq1  ACCCCTTTCCTTTTTATATGTCTCCCTGGTGGCAGCATGCTGGATGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTCCTTTTTATATGTCTCCCTGGTGGCAGCATGCTGGATGTCTG  300

seq1  CCTGTCACTCTCTGATCGTTACCAGTCTGAAAGTGAGAGTGGTTGAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACTCTCTGATCGTTACCAGTCTGAAAGTGAGAGTGGTTGAACAT  350

seq1  TGTTTTCAAACACAGTCCTCACTGTTCTTTAAGGTTGGTGGCCTTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAAACACAGTCCTCACTGTTCTTTAAGGTTGGTGGCCTTTTTCA  400

seq1  TATTTAACCCTCTGTTGTTTTGTTGTTGTTGTTGTTATTGTTGTTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACCCTCTGTTGTTTTGTTGTTGTTGTTGTTATTGTTGTTGTTTT  450

seq1  TAAACCAGAGATCCCCAGTACCATACTAGGCAGTCTGTGAGTGATTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGAGATCCCCAGTACCATACTAGGCAGTCTGTGAGTGATTAGAG  500

seq1  CTGCCTGCTGATTGATTTTACTTAAAGTCTCATTAGCTTGGGTGAAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCTGATTGATTTTACTTAAAGTCTCATTAGCTTGGGTGAAAAGG  550

seq1  TTTTCACTTTGGTAATTTTATTCGAAATGTTGAACAGAACAAATTTGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTTGGTAATTTTATTCGAAATGTTGAACAGAACAAATTTGATC  600

seq1  GCTGCAAGGATCCGTAACACTCGTGCAAGCTTATCTGCTGTGTTGGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAGGATCCGTAACACTCGTGCAAGCTTATCTGCTGTGTTGGGGAA  650

seq1  TGAGAGTTTATTGCATCATAAAAATGCTACCTTACGCTTCTATTGGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTTATTGCATCATAAAAATGCTACCTTACGCTTCTATTGGGTGA  700

seq1  GCATTGAAATTTTTATGAGTTCTTCCTAACTAAAGTTATCAGTAAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAAATTTTTATGAGTTCTTCCTAACTAAAGTTATCAGTAAATAAT  750

seq1  ACTCAAATCTTGACTGGACTCATCCTAGATTGATGTGACTTATTTGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATCTTGACTGGACTCATCCTAGATTGATGTGACTTATTTGATAA  800

seq1  ATCAACACCATAAAGAGACTCACAGCCGAGTGCCCCGACAGTCTGTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACACCATAAAGAGACTCACAGCCGAGTGCCCCGACAGTCTGTTCAA  850

seq1  GGATGGAGGGCAGATTCTAACTCTGCATTACTAAGTCAGAATTCAAGGAT  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGATGGAGGGCAGATTCTAACTCTGCATTACTAAGTCAGATTTCAAGGAT  900

seq1  GAAGACCTTCTGAGAGTAGCCGTTTCAGGAGAGGGAACAGCAGTGAGCTC  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGA-CTTCTGAGAGTAGCCGTTTCAGGAGAGGGAACAGCAGTGAGCTC  949

seq1  TTCTCCCTTTAGTGTGGCTCTCACATCATCTCTCACCTGGGACACAGAGC  1000
      |||| ||||||||||||||||||| |||||||||| ||||||  ||||||
seq2  TTCTTCCTTTAGTGTGGCTCTCACTTCATCTCTCA-CTGGGAACCAGAGC  998

seq1  TTGAAGCTTCATCATTGTGAGGGTTTTCTGGTGGTCTCCAACTCACAC-T  1049
      ||||||||||||||||| ||||||||||||||||||||| |||||||| |
seq2  TTGAAGCTTCATCATTGGGAGGGTTTTCTGGTGGTCTCC-ACTCACACAT  1047

seq1  CAGAGTTCCTGTTCCTTTCCAACGAGGCTAGGAACCTTCCAGAAAGAATT  1099
      ||||||| | |||||||||| |||||||||||| |||||    ||||| |
seq2  CAGAGTTTC-GTTCCTTTCC-ACGAGGCTAGGATCCTTC---GAAGAA-T  1091

seq1  ACAGCCAGCATTGAGCCACACCAGCCATGGAGT  1132
      || | | |||||||||| |||   |||||||||
seq2  AC-GGCTGCATTGAGCC-CACACACCATGGAGT  1122