BAC Information

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BAC

Clone NameB6Ng01-101N11
Chromosome2 (Build37)
Map Location 173,471,772 - 173,642,058
singlet/doubletdoublet
Overlap geneRab22a, 1700010B08Rik, Vapb, LOC620189
Upstream geneBmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911
Downstream geneLOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101N11.bB6Ng01-101N11.g
ACCDH910905DH910906
length472923
definitionDH910905|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N11, 5' end.DH910906|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,641,581 - 173,642,058)(173,471,772 - 173,472,684)
sequence
cagtagctggtgttctttggatgggaaccttttgtttctgttgacctgtg
tctttggtgatccttaattgggaattcacattctcttgattttcttggaa
aatctcagactctaaaacagcaatgctttcctaaggggccatttatcttt
gcttcttccaggagccaaaaggcatgaggaacctgagactaggctagccc
tgtccaccaccatcacaacatgggcaagaccagcatttctattcacactc
aggaggctctccgtgggtcccgtttcactagtctttgaggtcgagcgtgt
ttagactgtttgaaaagagtcgtttagatcatgtctcaatgtggacaatg
gaatccttctaaatactcatattacttttgcagagacagaatgccaattc
acactttttagcattctaagagaataaattcagtgtgagtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgt
gaattccttgcaggcaagacgggtgtagtggcttgaaccccagtacttgg
gaggcagaatagagcatatctcttacaagttcacggccaacctggcctat
acagtgtttaaggtagccagggctacagactaaaccctgtctcaaaggaa
aggaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagagaaaagaagagaaaa
gaaaagaaaagaaaagaagagaaaagaaaagaaaagaaaagaaaagaaaa
gaaaagaagagaaaagaaaagaaaagaaaagaaaagaaaccttgcaggca
gcagtgtctagaatttgattatgttatttccttcatattgtatattttaa
aatggcttcaaaatggctttaaatatatttgatataaagaaaaatacaca
ttatacactgataaagtaaaaataacaaaatggcacatagtgactgactg
atttctgaattgatgcaatccaaggaaaataattttactaataatgtcac
attcatacctaaaagaattgcacctcttattttcaagtaccaaaaagtca
ttttcttttataaagcattttgccttgtgtggacgagttagtttcctggg
ccctctgaggcttagaagactcccccagggctgagggtaacccaccatcc
gtgtagttgctactggtccctttgacaatggagcagcaccttgttttaat
ttggagcaaatgagattgaggctgcccttcctcctggggagaaggccagc
agcttcattgtggaaggcagcagtgtgctgggcaggtgcggaggtgagtc
atctccccgtgacatttgctgctgctgttcatatgtctctgaagacaaac
taaatcaatcgacaaccgatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173641581_173642058
seq2: B6Ng01-101N11.b_33_510 (reverse)

seq1  ACACACACACACACACACACACACACACACACACTCACACTGAATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACTCACACTGAATTTATT  50

seq1  CTCTTAGAATGCTAAAAAGTGTGAATTGGCATTCTGTCTCTGCAAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGAATGCTAAAAAGTGTGAATTGGCATTCTGTCTCTGCAAAAGTA  100

seq1  ATATGAGTATTTAGAAGGATTCCATTGTCCACATTGAGACATGATCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTATTTAGAAGGATTCCATTGTCCACATTGAGACATGATCTAAA  150

seq1  CGACTCTTTTCAAACAGTCTAAACACGCTCGACCTCAAAGACTAGTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCTTTTCAAACAGTCTAAACACGCTCGACCTCAAAGACTAGTGAAA  200

seq1  CGGGACCCACGGAGAGCCTCCTGAGTGTGAATAGAAATGCTGGTCTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACCCACGGAGAGCCTCCTGAGTGTGAATAGAAATGCTGGTCTTGCC  250

seq1  CATGTTGTGATGGTGGTGGACAGGGCTAGCCTAGTCTCAGGTTCCTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTGATGGTGGTGGACAGGGCTAGCCTAGTCTCAGGTTCCTCATG  300

seq1  CCTTTTGGCTCCTGGAAGAAGCAAAGATAAATGGCCCCTTAGGAAAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGCTCCTGGAAGAAGCAAAGATAAATGGCCCCTTAGGAAAGCAT  350

seq1  TGCTGTTTTAGAGTCTGAGATTTTCCAAGAAAATCAAGAGAATGTGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTTAGAGTCTGAGATTTTCCAAGAAAATCAAGAGAATGTGAATT  400

seq1  CCCAATTAAGGATCACCAAAGACACAGGTCAACAGAAACAAAAGGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTAAGGATCACCAAAGACACAGGTCAACAGAAACAAAAGGTTCCC  450

seq1  ATCCAAAGAACACCAGCTACTGGAATTC  478
      ||||||||||||||||||||||||||||
seq2  ATCCAAAGAACACCAGCTACTGGAATTC  478

seq1: chr2_173471772_173472684
seq2: B6Ng01-101N11.g_72_994

seq1  GAATTCCTTGCAGGCAAGACGGGTGTAGTGGCTTGAACCCCAGTACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCAGGCAAGACGGGTGTAGTGGCTTGAACCCCAGTACTTGG  50

seq1  GAGGCAGAATAGAGCATATCTCTTACAAGTTCACGGCCAACCTGGCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAATAGAGCATATCTCTTACAAGTTCACGGCCAACCTGGCCTAT  100

seq1  ACAGTGTTTAAGGTAGCCAGGGCTACAGACTAAACCCTGTCTCAAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTTAAGGTAGCCAGGGCTACAGACTAAACCCTGTCTCAAAGGAA  150

seq1  AGGA--------AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  192
      ||||        ||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  200

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAGAAGAGAAAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAGAAGAGAAAA  250

seq1  GAAAAGAAAAGAAAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAAAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA  300

seq1  GAAAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAACCTTGCAGGCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAACCTTGCAGGCA  350

seq1  GCAGTGTCTAGAATTTGATTATGTTATTTCCTTCATATTGTATATTTTAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCTAGAATTTGATTATGTTATTTCCTTCATATTGTATATTTTAA  400

seq1  AATGGCTTCAAAATGGCTTTAAATATATTTGATATAAAGAAAAATACACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTCAAAATGGCTTTAAATATATTTGATATAAAGAAAAATACACA  450

seq1  TTATACACTGATAAAGTAAAAATAACAAAATGGCACATAGTGACTGACTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACTGATAAAGTAAAAATAACAAAATGGCACATAGTGACTGACTG  500

seq1  ATTTCTGAATTGATGCAATCCAAGGAAAATAATTTTACTAATAATGTCAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAATTGATGCAATCCAAGGAAAATAATTTTACTAATAATGTCAC  550

seq1  ATTCATACCTAAAAGAATTGCACCTCTTA-TTTCAAGTACCAAAAAGTCA  591
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTCATACCTAAAAGAATTGCACCTCTTATTTTCAAGTACCAAAAAGTCA  600

seq1  TTTTCTTTTATAAAGCATTTTGCCTTGTGTGGACGAGTTAG-TTCCTGGG  640
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTCTTTTATAAAGCATTTTGCCTTGTGTGGACGAGTTAGTTTCCTGGG  650

seq1  CCCTCTGAGGCTTAGAAGACTCCCCCAGGGCTGA-GGTAACCCACCATCC  689
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCTCTGAGGCTTAGAAGACTCCCCCAGGGCTGAGGGTAACCCACCATCC  700

seq1  GTGTAGTTGCTACTGGTCCC-TTGACAATGGAGCAGCACCTTGTTTTAAT  738
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGTAGTTGCTACTGGTCCCTTTGACAATGGAGCAGCACCTTGTTTTAAT  750

seq1  TGGAAGCAAATGAGATTGAGGCTGCCCTTCCTCCTGGGGAGAAGGCCAGC  788
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCAAATGAGATTGAGGCTGCCCTTCCTCCTGGGGAGAAGGCCAGC  800

seq1  AGCTTCATTGTGGAAGGCAGCAGTGTGCTGGCCAGGTGCGGAGGTGAGTC  838
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCTTCATTGTGGAAGGCAGCAGTGTGCTGGGCAGGTGCGGAGGTGAGTC  850

seq1  ACCTCCCCGTGACATTTTGCTGCTGCTGTTCATTATGTCTCTGAAGACAA  888
      | |||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  ATCTCCCCGTGACA-TTTGCTGCTGCTGTTCA-TATGTCTCTGAAGACAA  898

seq1  ACTAAATCAATCGACAACCGATGAG  913
      |||||||||||||||||||||||||
seq2  ACTAAATCAATCGACAACCGATGAG  923