BAC Information

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BAC

Clone NameB6Ng01-102A12
Chromosome2 (Build37)
Map Location 161,930,891 - 162,094,486
singlet/doubletdoublet
Overlap genePtprt
Upstream geneChd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102A12.bB6Ng01-102A12.g
ACCDH911039DH911040
length1,191455
definitionDH911039|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A12, 5' end.DH911040|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,930,891 - 161,932,077)(162,094,028 - 162,094,486)
sequence
gaattcactttgcccataaagtatcacctttccctagtggcccacaagta
atggcagactgtcatgggctatacaaggctagccctttactgaagagagg
tggaggacaaagctctgtcttttgatttaatgatccatgggctaaactaa
gatctcacattcgttttgggaacagctactggaagaatgcagtcacatct
ttttttcgtcctgtccatggttggttattttcccgcctgaatagcagctt
agaattgcttcagaggcctaaggcatctttagggtaaaatctttctaact
ttaagcttcacaggtgtgttattaaccatggcagccgtataccataggta
catatataaactttaatacattagaactgaatacaacaaatagattaata
acttggacatgctgaccacattttgagggtacagtagatactctctgctg
gtagttcatctgttagagaacacagacacacagcactttcagagtcatag
agttaactgcacaactcatgtctagaatctgtagcttcagagagcagatg
aaagggccctaccctgacttagtccctcctccttctttctctccttataa
ggtcttctaagaaaccacacctacttatctctctacctcagtctctgcct
taatgtctccccacccaggatggttgcttatatacctgcatatcacacat
agctcatacatgtctctcttggatgagatggtgagccatttgagacagaa
gagaatagctctcacccctcaatctcagtatgcgtcacagaaaagatgcc
cactgaatgaatgagcgagataaacaaatggcccttcatactccccactc
tggtccagccaacagccaggtgctccccttgacctatccctccggcagac
ttcaggctccatttctcagccgttcagccttgcccagaagcccagctgtg
acagttaatagatgaatcccttcaattttcgagttccccagagtctcagc
cataaaataagacagatctcaggttgctcttcaccttaggacttagcact
cagccccatgaccttggctctgtcaacactgtccttcaatgccaccctct
ggtgcctcctgaaaggcaagaaaaggagtcagggagaatggggatggtgg
ctgtgttctttccccacctgctaacaaagactggtctgtga
caagccaagtgagagacctatctctaaataaataaataaataaataaata
aatccaaaatgggtggcacctgaggaatgacaacagaggttaacctctgg
tcaccaaacacacatatcaatatacacatttacacattcacacaaacaca
catacacatacatacagaggaagaccaagttgattgcagaatagcatcaa
gatcaataaggacgttaggctattaataagtcgtagcttctgtgattcat
ttgaaaccacaatgaaggaccttgttctgattatttgttgctgtgactga
gtgttattgctaaaaatccattaaaccattccaaatgactggctgctctt
tctttctttctttttttaaatgtattttattacattgtatttgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgt
gtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_161930891_161932077
seq2: B6Ng01-102A12.b_41_1231

seq1  GAATTCACTTTGCCCATAAAGTATCACCTTTCCCTAGTGGCCCACAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGCCCATAAAGTATCACCTTTCCCTAGTGGCCCACAAGTA  50

seq1  ATGGCAGACTGTCATGGGCTATACAAGGCTAGCCCTTTACTGAAGAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGACTGTCATGGGCTATACAAGGCTAGCCCTTTACTGAAGAGAGG  100

seq1  TGGAGGACAAAGCTCTGTCTTTTGATTTAATGATCCATGGGCTAAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACAAAGCTCTGTCTTTTGATTTAATGATCCATGGGCTAAACTAA  150

seq1  GATCTCACATTCGTTTTGGGAACAGCTACTGGAAGAATGCAGTCACATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCACATTCGTTTTGGGAACAGCTACTGGAAGAATGCAGTCACATCT  200

seq1  TTTTTTCGTCCTGTCCATGGTTGGTTATTTTCCCGCCTGAATAGCAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCGTCCTGTCCATGGTTGGTTATTTTCCCGCCTGAATAGCAGCTT  250

seq1  AGAATTGCTTCAGAGGCCTAAGGCATCTTTAGGGTAAAATCTTTCTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGCTTCAGAGGCCTAAGGCATCTTTAGGGTAAAATCTTTCTAACT  300

seq1  TTAAGCTTCACAGGTGTGTTATTAACCATGGCAGCCGTATACCATAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTCACAGGTGTGTTATTAACCATGGCAGCCGTATACCATAGGTA  350

seq1  CATATATAAACTTTAATACATTAGAACTGAATACAACAAATAGATTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAAACTTTAATACATTAGAACTGAATACAACAAATAGATTAATA  400

seq1  ACTTGGACATGCTGACCACATTTTGAGGGTACAGTAGATACTCTCTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGACATGCTGACCACATTTTGAGGGTACAGTAGATACTCTCTGCTG  450

seq1  GTAGTTCATCTGTTAGAGAACACAGACACACAGCACTTTCAGAGTCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCATCTGTTAGAGAACACAGACACACAGCACTTTCAGAGTCATAG  500

seq1  AGTTAACTGCACAACTCATGTCTAGAATCTGTAGCTTCAGAGAGCAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTGCACAACTCATGTCTAGAATCTGTAGCTTCAGAGAGCAGATG  550

seq1  AAAGGGCCCTACCCTGACTTAGTCCCTCCTCCTTCTTTCTCTCCTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCCTACCCTGACTTAGTCCCTCCTCCTTCTTTCTCTCCTTATAA  600

seq1  GGTCTTCTAAGAAACCACACCTACTTATCTCTCTACCTCAGTCTCTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTAAGAAACCACACCTACTTATCTCTCTACCTCAGTCTCTGCCT  650

seq1  TAATGTCTCCCCACCCAGGATGGTTGCTTATATACCTGCATATCACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTCCCCACCCAGGATGGTTGCTTATATACCTGCATATCACACAT  700

seq1  AGCTCATACATGTCTCTCTTGGATGAGATGGTGAGCCATTTGAGACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATACATGTCTCTCTTGGATGAGATGGTGAGCCATTTGAGACAGAA  750

seq1  GAGAATAGCTCTCACCCCTCAATCTCAGTATGCGTCACAGAAAAGATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGCTCTCACCCCTCAATCTCAGTATGCGTCACAGAAAAGATGCC  800

seq1  CACTGAATGAATGAGCGAGATAAACAAATGGCCCTTCATACTCCCCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATGAATGAGCGAGATAAACAAATGGCCCTTCATACTCCCCACTC  850

seq1  TGGTCCAGCCAACAGCCAGGTGCTCCCCTTGACCTATCCCTCCGGCAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGCCAACAGCCAGGTGCTCCCCTTGACCTATCCCTCCGGCAGAC  900

seq1  TTCAGGCTCCATTTCTCAGCCGTTCAGCCTTGCCCAGAAGCCCAGCTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTCCATTTCTCAGCCGTTCAGCCTTGCCCAGAAGCCCAGCTGTG  950

seq1  ACAGTTAATAGATGAATCCCTTCAATTTTCGAGTTCCCCAGAGTCTCAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAATAGATGAATCCCTTCAATTTTCGAGTTCCCCAGAGTCTCAGC  1000

seq1  CATAAAATAAGACAGATCTCCAGGGTGCTCTTCACC-TAGGACTTAGCAC  1049
      ||||||||||||||||||| |||| ||||||||||| |||||||||||||
seq2  CATAAAATAAGACAGATCT-CAGGTTGCTCTTCACCTTAGGACTTAGCAC  1049

seq1  TCAGCCCCATGACCTTGCCTCTGTCAACACTGTCCTTTCACATGCCACCC  1099
      ||||||||||||||||| ||||||||||||||||| |||| |||||||||
seq2  TCAGCCCCATGACCTTGGCTCTGTCAACACTGTCC-TTCA-ATGCCACCC  1097

seq1  TCT-GTGCCT-CTGAAAGGCAGAAACAGGAGTCAGGGAG-ATGGGGAT-G  1145
      ||| |||||| ||||||||||  || ||||||||||||| |||||||| |
seq2  TCTGGTGCCTCCTGAAAGGCAAGAAAAGGAGTCAGGGAGAATGGGGATGG  1147

seq1  TGGCTGTG-TCTTCCTCAACCTGCTAACAAAGACT-GTCTGTGA  1187
      |||||||| |||| | | ||||||||||||||||| ||||||||
seq2  TGGCTGTGTTCTTTCCCCACCTGCTAACAAAGACTGGTCTGTGA  1191

seq1: chr2_162094028_162094486
seq2: B6Ng01-102A12.g_70_528 (reverse)

seq1  CACACACACACACACACACACACACACACATACACACACACACACACACA  50
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  CACACACACACCCACACACACACACACACACACACACACACACACACACA  50

seq1  CACACACACACAAATACAATGTAATAAAATACATTTAAAAAAAGAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAAATACAATGTAATAAAATACATTTAAAAAAAGAAAGAA  100

seq1  AGAAAGAGCAGCCAGTCATTTGGAATGGTTTAATGGATTTTTAGCAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGCAGCCAGTCATTTGGAATGGTTTAATGGATTTTTAGCAATAA  150

seq1  CACTCAGTCACAGCAACAAATAATCAGAACAAGGTCCTTCATTGTGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTCACAGCAACAAATAATCAGAACAAGGTCCTTCATTGTGGTTT  200

seq1  CAAATGAATCACAGAAGCTACGACTTATTAATAGCCTAACGTCCTTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAATCACAGAAGCTACGACTTATTAATAGCCTAACGTCCTTATTG  250

seq1  ATCTTGATGCTATTCTGCAATCAACTTGGTCTTCCTCTGTATGTATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATGCTATTCTGCAATCAACTTGGTCTTCCTCTGTATGTATGTGT  300

seq1  ATGTGTGTTTGTGTGAATGTGTAAATGTGTATATTGATATGTGTGTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTTGTGTGAATGTGTAAATGTGTATATTGATATGTGTGTTTGG  350

seq1  TGACCAGAGGTTAACCTCTGTTGTCATTCCTCAGGTGCCACCCATTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGAGGTTAACCTCTGTTGTCATTCCTCAGGTGCCACCCATTTTGG  400

seq1  ATTTATTTATTTATTTATTTATTTATTTAGAGATAGGTCTCTCACTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTATTTATTTAGAGATAGGTCTCTCACTTGGC  450

seq1  TTGGAATTC  459
      |||||||||
seq2  TTGGAATTC  459