BAC Information

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BAC

Clone NameB6Ng01-102D21
Chromosome2 (Build37)
Map Location 79,144,842 - 79,145,791
singlet/doubletsinglet
Overlap geneItga4
Upstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526
Downstream geneCerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102D21.bB6Ng01-102D21.g
ACCDH911189DH911190
length9471,195
definitionDH911189|Mus musculus domesticus DNA, BAC clone: B6Ng01-102D21, 5' end.DH911190|Mus musculus domesticus DNA, BAC clone: B6Ng01-102D21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctcagtcaggcaatgttagcatagccatgggtatctatagtt
cagaggcaaggagccctcccttgactggtaaaggaacttagtgcttacaa
gtgattcagttggctcactcaggtaattgagtacctgctttgtgtatcag
agcatggtgtgactttgtgggtctattagtttgggaatatataattttcc
atttgagtattttttctaagatatgtaggtttttggtttatcaagagact
ttgataaaaagtcgttgtgcaggtgcatgtgcaaagagggagatttgcga
agccatagatgaagtgattccctgtgcttgcatttgggttctctgtatct
tcctgctcctccttcattgctaatcttcatgagaaatgagatttcaaagt
ttacgagaaaatgtcactaagaacgatttcaacttattcaaataatagat
agaatcattaattcattttttcttgtttcttgcaaagtaattgtctactt
agcatttttaatcagaagtgtttttccaattaaatatcaagcctatgatt
ttaaatagcatctggccaaacataaggtggtgtttcttaggatgtggtcc
tgagtcatgtccaggaaaatatccacaatgtctattggaaatgtgtatcc
tcagggcctagcaaacacagaagtggatgatcacagtcagctattggatg
ggtcacacggcccctaatggaggagctagagaaattacccaaggagctat
aggaaactgcaaccctataggtggaacaacaatataaactaaccagtacc
cgggagctcttgtctttagctgcatatgtatcaaaagatggcctagtcgg
ccatcactgcaaagagaggcccattgaacttgcaactttatatgccccag
tacaggggaacgccagggccaaaaggggagtgggtgggtaggggatt
gaattctatagctgtgaagagacaccatgaccatggcaactcttataaag
gagaatatttaattggggctggcttacagtttcagatttttagtatatta
tcctcatggtaggaagcatggcagcatgtaggcagacatggtactggaga
agtagctgagagttgggcatggctttaatctttgactgcaaagcctttcc
ctctgactacttcctccaacaaggccacactacttactccaacacagcca
tacttcctaacagtgccactccctattgccctagggagaccatttccttt
caaatcaccacggcctgtcattatgttatttccagtttgctgtctctggt
tcatgctcctaattgactgatgctgtgatctcttagcttcttgctcccac
acccaggcctgccactagctgctatccctccctgtcataatggatgattc
tctggaatctgatgtcaaagtcacctctcttcttcttaggttacttttca
tcctggtgttttatcacagcaacagaaaagtaactaacacacagagaaca
gtgcagtcacatggagttctgaaaagatgggttaaagagtctcacccctg
tgtctccatttccagaatgctggaatgaagctcaagaattttgtcttcca
taagttcccaattgtgactgatcctgctgatctggagattggtttgagca
ccagcaaactgcattgcagctcaacaacatgtttatgagcagaggacatc
agctctgcagacaatttgagcttcccttgagagaagtccttcttatgtgc
ctccttaaccccatgctttgaactattcatactatcagttggagttactc
aaagcacttaaaggaacagacacaatactcttttccccttactttctttg
tattctgtaatagtctattgcagcagctattagagtgatactacattcca
gatgaccataggcagcaagtgatcaataatccactgtgggatgtcccagg
ttattgtcatctcgcctttaatactctgaactgcaccccaatcatcagtc
agtgatcataagttttgtggttctggactattctgtttgaagtcacacct
ctgcttcataagcagaagggactagattcgggatcttattagccgttgaa
tagtattgattcatggtggcatgagataaccttccacggaaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79144842_79145791
seq2: B6Ng01-102D21.b_44_990

seq1  GAATTCTTCTCAGTCAGGCAATGTTAGCATAGCCATGGGTATCTATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCAGTCAGGCAATGTTAGCATAGCCATGGGTATCTATAGTT  50

seq1  CAGAGGCAAGGAGCCCTCCCTTGACTGGTAAAGGAACTTAGTGCTTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAAGGAGCCCTCCCTTGACTGGTAAAGGAACTTAGTGCTTACAA  100

seq1  GTGATTCAGTTGGCTCACTCAGGTAATTGAGTACCTGCTTTGTGTATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCAGTTGGCTCACTCAGGTAATTGAGTACCTGCTTTGTGTATCAG  150

seq1  AGCATGGTGTGACTTTGTGGGTCTATTAGTTTGGGAATATATAATTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTGTGACTTTGTGGGTCTATTAGTTTGGGAATATATAATTTTCC  200

seq1  ATTTGAGTATTTTTTCTAAGATATGTAGGTTTTTGGTTTATCAAGAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTATTTTTTCTAAGATATGTAGGTTTTTGGTTTATCAAGAGACT  250

seq1  TTGATAAAAAGTCGTTGTGCAGGTGCATGTGCAAAGAGGGAGATTTGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAAAGTCGTTGTGCAGGTGCATGTGCAAAGAGGGAGATTTGCGA  300

seq1  AGCCATAGATGAAGTGATTCCCTGTGCTTGCATTTGGGTTCTCTGTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGATGAAGTGATTCCCTGTGCTTGCATTTGGGTTCTCTGTATCT  350

seq1  TCCTGCTCCTCCTTCATTGCTAATCTTCATGAGAAATGAGATTTCAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCCTCCTTCATTGCTAATCTTCATGAGAAATGAGATTTCAAAGT  400

seq1  TTACGAGAAAATGTCACTAAGAACGATTTCAACTTATTCAAATAATAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAGAAAATGTCACTAAGAACGATTTCAACTTATTCAAATAATAGAT  450

seq1  AGAATCATTAATTCATTTTTTCTTGTTTCTTGCAAAGTAATTGTCTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATTAATTCATTTTTTCTTGTTTCTTGCAAAGTAATTGTCTACTT  500

seq1  AGCATTTTTAATCAGAAGTGTTTTTCCAATTAAATATCAAGCCTATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTTAATCAGAAGTGTTTTTCCAATTAAATATCAAGCCTATGATT  550

seq1  TTAAATAGCATCTGGCCAAACATAAGGTGGTGTTTCTTAGGATGTGGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGCATCTGGCCAAACATAAGGTGGTGTTTCTTAGGATGTGGTCC  600

seq1  TGAGTCATGTCCAGGAAAATATCCACAATGTCTATTGGAAATGTGTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATGTCCAGGAAAATATCCACAATGTCTATTGGAAATGTGTATCC  650

seq1  TCAGGGCCTAGCAAACACAGAAGTGGATGATCACAGTCAGCTATTGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCTAGCAAACACAGAAGTGGATGATCACAGTCAGCTATTGGATG  700

seq1  GGTCACACGGCCCCTAATGGAGGAGCTAGAGAAATTACCCAAGGAGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACGGCCCCTAATGGAGGAGCTAGAGAAATTACCCAAGGAGCTAT  750

seq1  AGGAAACTGCAACCCTATAGGTGGAACAACAATATAAACTAACCAGTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTGCAACCCTATAGGTGGAACAACAATATAAACTAACCAGTACC  800

seq1  CGGGAGCTCTTGTCTTTAGCTGCATATGTATCAAAAGATGGCCTAGTCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGCTCTTGTCTTTAGCTGCATATGTATCAAAAGATGGCCTAGTCGG  850

seq1  CCATCACTGCAAAGAGAGGCCCATTGAACTTGCAAACTTTATATGCCCCA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCATCACTGCAAAGAGAGGCCCATTGAACTTGC-AACTTTATATGCCCCA  899

seq1  GTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGATT  950
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  GTACAGGGGAACGCCAGGGCCAAAA--GGGGAGTGGGTGGGTAGGGGATT  947